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Polymer-Mediated Signal Amplification Mechanisms for Bioelectronic Detection: Recent Advances and Future Perspectives. 聚合物介导的生物电子检测信号放大机制:最新进展和未来展望。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-11 DOI: 10.3390/bios15120808
Ying Sun, Dan Gao

In recent years, polymer-mediated signal amplification has drawn wide attention in bioelectronic sensing. With the rapid progress of biosensing and flexible electronics, polymers with excellent electron-ion transport properties, tunable molecular structures, and good biocompatibility have become essential materials for enhancing detection sensitivity and interfacial stability. However, current sensing systems still face challenges such as signal attenuation, surface fouling, and multi-component interference in complex biological environments, limiting their use in medical diagnosis and environmental monitoring. This review summarizes the progress of conductive polymers, molecularly imprinted polymers, hydrogels, and composite polymers in medical diagnosis, food safety, and environmental monitoring, focusing on their signal amplification mechanisms and structural optimization strategies in electronic transport regulation, molecular recognition enhancement, and antifouling interface design. Overall, polymers improve detection performance through interfacial electronic reconstruction and multidimensional synergistic amplification, offering new ideas for developing highly sensitive, stable, and intelligent biosensors. In the future, polymer-based amplification systems are expected to expand in multi-parameter integrated detection, long-term wearable monitoring, and in situ analysis of complex samples, providing new approaches to precision medicine and sustainable environmental health monitoring.

近年来,聚合物介导的信号放大在生物电子传感领域引起了广泛的关注。随着生物传感和柔性电子学的快速发展,具有优异的电子离子输运性能、可调节的分子结构和良好的生物相容性的聚合物已成为提高检测灵敏度和界面稳定性的重要材料。然而,当前的传感系统在复杂的生物环境中仍然面临着信号衰减、表面污染和多组分干扰等挑战,限制了其在医疗诊断和环境监测中的应用。本文综述了导电聚合物、分子印迹聚合物、水凝胶和复合聚合物在医学诊断、食品安全、环境监测等领域的研究进展,重点介绍了它们在电子输运调控、分子识别增强、防污界面设计等方面的信号放大机制和结构优化策略。总体而言,聚合物通过界面电子重构和多维协同放大提高了检测性能,为开发高灵敏、稳定、智能的生物传感器提供了新的思路。未来,基于聚合物的扩增系统有望扩展到多参数综合检测、长期可穿戴监测和复杂样品的原位分析,为精准医疗和可持续环境健康监测提供新的途径。
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引用次数: 0
Nanoparticle Detection in Biology and Medicine: A Review. 纳米颗粒检测在生物学和医学中的研究进展。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-11 DOI: 10.3390/bios15120809
Olga A Kolesnikova, Dmitry A Shikvin, Arina O Antonova, Anna M Iureva, Elena N Komedchikova, Anastasiia S Obozina, Valeryia S Kachan, Anna V Svetlakova, Ilya D Kukushkin, Victoria O Shipunova

Background/objectives: Nanoparticles have emerged as indispensable tools in modern biomedicine, enabling precise diagnostics, targeted therapy, and controlled drug delivery. Despite their rapid progress, the translation of nanoparticle-based systems critically depends on the ability to detect, quantify, and track them across complex biological environments. Over the past two decades, a wide spectrum of detection modalities has been developed, encompassing optical, magnetic, acoustic, nuclear, cytometric, and mass spectrometric principles. Yet, no comprehensive framework has been established to compare these methods in terms of sensitivity, spatial resolution, and clinical applicability.

Methods: Here we show a systematic analysis of all broadly applicable nanoparticle detection strategies, outlining their mechanisms, advantages, and drawbacks, and providing illustrative examples of practical applications.

Results: This comparison reveals that each modality occupies a distinct niche: optical methods offer high sensitivity but limited penetration depth; magnetic and acoustic modalities enable repeated non-invasive tracking; nuclear imaging ensures quantitative, whole-body visualization; and invasive biochemical or histological assays achieve ultimate detection limits at the cost of tissue integrity. These findings redefine how each technique contributes to nanoparticle biodistribution and mechanistic studies, clarifying which are best suited for translational and clinical use.

Conclusions: Placed in a broader context, this review bridges fundamental nanotechnology with biomedical applications, outlining a unified methodological framework that will guide the rational design, validation, and clinical implementation of nanoparticle-based therapeutics and diagnostics. By synthesizing the field into a single comparative framework, it also provides an accessible entry point for newcomers in nanotechnology and related biomedical sciences.

背景/目的:纳米颗粒已经成为现代生物医学中不可或缺的工具,可以实现精确诊断、靶向治疗和控制药物输送。尽管进展迅速,基于纳米粒子的系统的转化严重依赖于在复杂生物环境中检测、量化和跟踪它们的能力。在过去的二十年里,广泛的检测方式已经发展起来,包括光学、磁性、声学、核、细胞计数和质谱原理。然而,目前还没有一个全面的框架来比较这些方法在灵敏度、空间分辨率和临床适用性方面的差异。方法:在这里,我们对所有广泛适用的纳米颗粒检测策略进行了系统分析,概述了它们的机制、优点和缺点,并提供了实际应用的示例。结果:这一比较表明,每种方式都占据了独特的利基:光学方法具有高灵敏度,但穿透深度有限;磁性和声学模式可实现重复的非侵入性跟踪;核成像确保定量、全身可视化;侵入性生化或组织学分析以牺牲组织完整性为代价实现了最终的检测极限。这些发现重新定义了每种技术对纳米颗粒生物分布和机制研究的贡献,阐明了哪种技术最适合转化和临床应用。结论:在更广泛的背景下,这篇综述将纳米技术与生物医学应用联系起来,概述了一个统一的方法框架,将指导基于纳米颗粒的治疗和诊断的合理设计、验证和临床实施。通过将该领域综合成一个单一的比较框架,它还为纳米技术和相关生物医学科学的新手提供了一个可访问的切入点。
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引用次数: 0
A Novel Diagnostic Tool for West Nile Virus Lineage 1a and 2 Using a CRISPR-Cas12a System. 使用CRISPR-Cas12a系统的西尼罗病毒谱系1a和2的新诊断工具
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-10 DOI: 10.3390/bios15120807
Soo Bin Hwang, Yoon-Jae Song, Pil-Gu Park

The West Nile Virus (WNV), transmitted by Culex mosquitoes as a major vector, has been reported worldwide. Also, West Nile neuroinvasive disease (WNND) caused by WNV lineage 1a and 2 neuroinvasive infections has been constantly reported with high fatality rates. Nevertheless, there are no treatments and vaccinations, so diagnosis in the early stages is important. Recently, a molecular diagnostic technique using DNA endonuclease-targeted CRISPR trans reporter (DETECTR) with the CRISPR-Cas12a system integrated with isothermal nucleic acid amplification has newly emerged. In this study, we designed a 2-Step WNV DETECTR with reverse transcription-recombinase polymerase amplification (RT-RPA) for rapid and sensitive WNV diagnosis. It successfully detected down to 1.0 × 102 RNA copies for both WNV lineage 1a and 2 with demonstrating similar sensitivity to qRT-PCR without cross-reactivity to other viruses. Additionally, we designed a 1-Step WNV DETECTR, incorporating all processing steps into a single tube, capable of detecting down to 1.0 × 103 RNA copies for both lineages. Furthermore, we developed a more streamlined method, the 1-Step with Filter WNV DETECTR, which achieved detection limits comparable to the 2-Step method, while reducing the processing time by 5 min. This study also explored the potential of the Punch-it™ NA-Sample Kit as an efficient alternative lysis method by comparing the detection differences across various lysis methods. Through this method, we achieved rapid and simple amplification and detection processes suitable for field diagnostics with high specificity and sufficient sensitivity. Therefore, DETECTR methods presented themselves as promising alternatives to conventional diagnostic tools, potentially overcoming financial and technical constraints in diverse medical settings.

以库蚊为主要媒介传播的西尼罗河病毒(WNV)在世界范围内已有报道。此外,西尼罗河病毒谱系1a和2神经侵袭性感染引起的西尼罗河神经侵袭性疾病(WNND)也不断报道,死亡率高。然而,目前还没有治疗方法和疫苗,因此早期诊断非常重要。近年来,一种利用DNA内切酶靶向CRISPR反转录报告基因(DETECTR)与CRISPR- cas12a系统集成等温核酸扩增的分子诊断技术应运而生。在这项研究中,我们设计了一种具有逆转录重组酶聚合酶扩增(RT-RPA)的2步西尼罗河病毒检测器,用于快速敏感的西尼罗河病毒诊断。该方法成功地检测到西尼罗河病毒1a和2谱系的RNA拷贝数为1.0 × 102,与qRT-PCR具有相似的灵敏度,与其他病毒无交叉反应性。此外,我们设计了一个1步WNV DETECTR,将所有处理步骤合并到一个管中,能够检测到1.0 × 103个RNA拷贝,用于两个谱系。此外,我们开发了一种更精简的方法,即带滤波器的1-Step WNV DETECTR,其检测限与2-Step方法相当,同时将处理时间缩短了5分钟。本研究还通过比较不同裂解方法的检测差异,探索了Punch-it™NA-Sample Kit作为一种高效的替代裂解方法的潜力。通过该方法,我们实现了快速简便的扩增和检测过程,适用于现场诊断,具有高特异性和足够的灵敏度。因此,DETECTR方法是传统诊断工具的有希望的替代品,有可能克服各种医疗环境中的财政和技术限制。
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引用次数: 0
Electrochemical Detection of Aβ42 and Aβ40 at Attomolar Scale via Optimised Antibody Loading on Pyr-NHS-Functionalised 3D Graphene Foam Electrodes. pyr - nhs功能化三维石墨烯泡沫电极上优化抗体负载对Aβ42和Aβ40的电化学检测。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-10 DOI: 10.3390/bios15120806
Muhsin Dogan, Sophia Nazir, David Jenkins, Yinghui Wei, Genhua Pan

Alzheimer's Disease (AD) is one of the most commonly seen neurodegenerative disorders, where early detection of its biomarkers is crucial for effective management. Conventional diagnostic methods are often expensive, time-consuming, and highly complex, which highlights an urgent need for point-of-care biosensing technology. In this work, we developed assays on three-dimensional (3D) graphene foam electrodes by functionalising them with a 1-Pyrenebutyric acid N-hydroxysuccinimide ester (Pyr-NHS) to enable effective antibody immobilisation for the detection of amyloid beta peptides (Aβ42 and Aβ40), key biomarkers for AD. Pyr-NHS linkers were used for stable functionalisation, followed by binding with Aβ42 and Aβ40 antibodies, and then bovine serum albumin (BSA) was employed as a blocking agent to minimise non-specific bindings on the electrode surface. Differential Pulse Voltammetry (DPV) measurements showed satisfactory stability over 12 days (RDS upper limit was <10%) and highly sensitive and specific detection of Aβ42 and Aβ40, with insignificant interference of tau217 protein. The biosensor exhibited a low limit of detection (LOD) with 252 aM for Aβ42 and 395 aM for Aβ40, covering 0.125 fM-1 nM and 0.125 fM-100 pM linear ranges, respectively. Further validation was conducted on spiked-diluted human plasma. This excellent analytical performance was attributed to the stable Pyr-NHS functionalisation, the 3D graphene foam enabling superior conductivity and a larger surface area on the working electrode, and the optimisation of antibody concentration for immobilisation. These promising results suggest that 3D graphene foam-based biosensors have considerable potential for early detection of AD biomarkers and developing cost-effective, portable, and reliable point-of-care devices.

阿尔茨海默病(AD)是最常见的神经退行性疾病之一,其生物标志物的早期检测对于有效治疗至关重要。传统的诊断方法往往昂贵、耗时且高度复杂,这凸显了对即时生物传感技术的迫切需求。在这项工作中,我们开发了三维(3D)石墨烯泡沫电极的检测方法,通过使用1-芘丁酸n -羟基琥珀酰亚胺酯(Pyr-NHS)使其功能化,从而实现有效的抗体固定化,以检测淀粉样蛋白β肽(a β42和a β40),这是AD的关键生物标志物。Pyr-NHS连接物用于稳定功能化,随后与a - β42和a - β40抗体结合,然后牛血清白蛋白(BSA)作为阻断剂,以尽量减少电极表面的非特异性结合。差分脉冲伏安法(DPV)在12天(RDS上限)内显示出令人满意的稳定性
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引用次数: 0
Transparent PEDOT:PSS/PDMS Leaf Tattoos for Multiplexed Plant Health Monitoring and Energy Harvesting. 透明PEDOT:用于多路植物健康监测和能量收集的PSS/PDMS叶片纹身。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-09 DOI: 10.3390/bios15120805
Antonio Ruiz-Gonzalez, Harriet Kempson, Jim Haseloff

The development of non-invasive sensors for individualised plant monitoring has become essential in smart farming to increase crop production. However current approaches are focused on the measurement of soil parameters instead, which cannot provide direct information about plant health. Moreover, equipment used for the direct monitoring of plant health are costly with complex operation, hindering their use by the wider community of farmers. This work reports for the first time the development of a flexible and highly transparent sensor, based on thin conductive PEDOT:PSS/PDMS hybrid films directly deposited onto leaves. The films were fabricated by aerosol deposition and could operate under two different modes. The first mode is used for the determination of plant dryness and concentration of ions. The second mode is used as a triboelectric generator to generate up to 7.2 µW cm-2 electrical power through the friction of the sensors with a leaf. The device was assembled using a low-cost (GBP < 70) microcontroller incorporating environmental sensors, and an intuitive interface was designed for operation. The final sensor could determine the ionic strength at the millimolar level by means of the impedance of electrodes. This performance allowed the study of differences in ionic content and water availability in tomato leaves during day-night cycles. The high stability of the sensors also allowed the long-term monitoring of plant health. Using this technology, a decrease in the leaf ionic strength due to the lack of electrolytes was observed after watering with deionised water for 2 days. Upon supplementation with fertiliser, the recorded ionic strength and leaf water content were similar to the original values prior to the use of DI water, demonstrating the applicability of the device in the early detection of stress factors that could decrease crop production.

开发用于个性化植物监测的非侵入式传感器对于智能农业提高作物产量至关重要。然而,目前的方法侧重于土壤参数的测量,而不能提供有关植物健康的直接信息。此外,用于直接监测植物健康的设备价格昂贵,操作复杂,阻碍了更广泛的农民社区使用这些设备。这项工作首次报道了基于直接沉积在叶子上的导电PEDOT:PSS/PDMS混合薄膜的柔性和高透明传感器的开发。薄膜采用气溶胶沉积法制备,可在两种不同模式下工作。第一种模式用于测定植物干燥度和离子浓度。第二种模式用作摩擦发电机,通过传感器与叶片的摩擦产生高达7.2 μ W cm-2的电力。该装置采用集成环境传感器的低成本(GBP < 70)微控制器组装,并设计了直观的操作界面。最后的传感器可以通过电极的阻抗来确定毫摩尔水平的离子强度。这种性能使得研究番茄叶片在昼夜循环中离子含量和水分有效性的差异成为可能。传感器的高稳定性也允许对植物健康进行长期监测。使用该技术,在用去离子水浇灌2天后,观察到由于缺乏电解质而导致叶片离子强度下降。在补充肥料后,记录的离子强度和叶片含水量与使用去离子水之前的原始值相似,表明该装置在早期检测可能导致作物减产的胁迫因素方面的适用性。
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引用次数: 0
Recent Advances in MXene-Based Screen-Printed Electrochemical Sensors for Point-of-Care Biomarker Detections. 基于mxene的屏幕印刷电化学传感器在护理点生物标志物检测中的最新进展。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-08 DOI: 10.3390/bios15120804
Thao Thi Nguyen, Liang Zhou, Jinming Kong, Aiqin Luo, Zikai Hao, Jiangjiang Zhang

Contemporary biomedical diagnostics increasingly demand high sensitivity for pathogen detection and real-time health monitoring. In response to these requirements, screen-printed electrochemical sensors (SPEs) have emerged as a practical analytical platform owing to their low cost, portability, and compatibility with point-of-care and wearable systems. In the recent past, nanomaterials in two-dimensional format, especially MXenes, have gained much interest due to their high electrical conductivity, controllable surface chemistry, and biocompatibility, which can improve the performance and applicability of SPEs. The current review concentrates on the latest developments between 2020 and 2025, providing a critical assessment of research employing MXene-based nanomaterials for the modification and development of screen-printed electrode platforms. We provide an overview of fabrication techniques, printing methods, and surface modification methods, and proceed with an analysis of the electrochemical performance of MXenes and MXene-based heterostructures. Lastly, contemporary issues are considered, and opinions are suggested to facilitate the translation of MXene-functionalized SPEs to real biomedical diagnosis solutions.

当代生物医学诊断越来越需要高灵敏度的病原体检测和实时健康监测。为了满足这些需求,丝网印刷电化学传感器(spe)由于其低成本、便携性和与护理点和可穿戴系统的兼容性而成为一种实用的分析平台。近年来,二维纳米材料,特别是MXenes,因其高导电性、可控的表面化学和生物相容性,可以提高spe的性能和适用性而受到广泛关注。目前的综述集中在2020年至2025年之间的最新发展,提供了一个关键的研究评估使用mxene纳米材料的修饰和开发的丝网印刷电极平台。我们概述了MXenes的制备技术、印刷方法和表面改性方法,并分析了MXenes和基于MXenes的异质结构的电化学性能。最后,考虑了当前的问题,并提出了一些意见,以促进将mxene功能化的spe转化为真正的生物医学诊断解决方案。
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引用次数: 0
Urinary Metabolomic Changes and Potential Exercise-Induced Muscle Damage Biomarkers Identification in Trained Young Males Following Acute Intermittent Rowing Training. 急性间歇划船训练后年轻男性尿液代谢组学变化和潜在运动引起的肌肉损伤生物标志物鉴定。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-08 DOI: 10.3390/bios15120803
Yang Cheng, Yue Yi, Xuefeng Shi, Shumin Bo

(1) Background: This study aims to explore the changes in urinary metabolomic profile among trained young males following acute intermittent rowing training (AIRT), and to identify potential urinary biomarkers associated with exercise-induced muscle damage (EIMD). (2) Methods: 22 trained young males were recruited to perform AIRT. The changes in blood biochemical indexes associated with EIMD were analyzed. EIMD occurrence was evaluated using blood biochemical indexes, muscle function, and pain assessment. The changes in urinary metabolites were determined using untargeted metabolomic analysis. (3) Results: Four blood biochemical indices, including creatine kinase, lactate dehydrogenase, creatine kinase-MB, and hydroxybutyrate dehydrogenase, were significantly elevated immediately after AIRT. Furthermore, an obvious immune response appeared, and countermovement jump performance significantly decreased. Among 384 urinary metabolites, 33 were significantly upregulated, and 12 were downregulated immediately after AIRT. Upregulated metabolites were mainly involved in phenylacetate metabolism, ammonia recycling, the urea cycle, and glutathione metabolism. Four potential urinary biomarkers were identified, including 2'-Deoxycytidine, cytosine, Phenylacetaldehyde, and Pyridoxamine. (4) Conclusions: AIRT induced EIMD in all participants and significantly altered urinary metabolite profiles. The changes in urinary metabolites and pathways were due to the metabolic adaptation to oxidative stress, inflammatory responses, and ammonia metabolism imbalance. The selected four potential urinary biomarkers provide important evidence for the further development of a non-invasive, urine-based method for the immediate assessment of EIMD.

(1)背景:本研究旨在探讨急性间歇划船训练(AIRT)后年轻男性尿液代谢组学特征的变化,并确定与运动诱导肌肉损伤(EIMD)相关的潜在尿液生物标志物。(2)方法:招募22名受过训练的青年男性进行AIRT。分析与EIMD相关的血液生化指标的变化。通过血液生化指标、肌肉功能和疼痛评估来评估EIMD的发生。尿代谢物的变化采用非靶向代谢组学分析测定。(3)结果:经AIRT治疗后,肌酸激酶、乳酸脱氢酶、肌酸激酶- mb、羟丁酸脱氢酶4项血液生化指标均显著升高。此外,出现了明显的免疫反应,反向跳跃性能显著下降。384种尿代谢物中,有33种在AIRT后显著上调,12种在AIRT后立即下调。上调代谢产物主要涉及苯乙酸代谢、氨循环、尿素循环和谷胱甘肽代谢。确定了4种潜在的尿液生物标志物,包括2'-脱氧胞苷、胞嘧啶、苯乙醛和吡哆胺。(4)结论:AIRT诱导了所有参与者的EIMD,并显著改变了尿液代谢物谱。尿代谢产物和途径的变化是由于对氧化应激、炎症反应和氨代谢失衡的代谢适应。所选择的四个潜在的尿液生物标志物为进一步开发一种无创的、基于尿液的方法来即时评估EIMD提供了重要的证据。
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引用次数: 0
An Improved Dengue Virus Serotype-Specific Non-Structural Protein 1 Capture Immunochromatography Method with Reduced Sample Volume. 一种改进的登革病毒血清型特异性非结构蛋白1捕获免疫层析法。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-07 DOI: 10.3390/bios15120802
Warisara Sretapunya, Thitiya Buranachat, Montita Prasomthong, Rittichai Tantikorn, Areerat Sa-Ngarsang, Sirirat Naemkhunthot, Laddawan Meephaendee, Pattara Wongjaroen, Chika Tanaka, Yoriko Shimadzu, Katsuya Ogata, Kunihiro Kaihatsu, Ryo Morita, Michinori Shirano, Juthamas Phadungsombat, Tadahiro Sasaki, Ritsuko Kubota-Koketsu, Yoshihiro Samune, Emi E Nakayama, Tatsuo Shioda

The four serotypes of dengue virus (DENV), types 1 to 4 (DENV-1 to DENV-4), exhibit approximately 60% identity in the encoded amino acid residues of viral proteins. Reverse transcription of RNA extracted from patient serum specimens followed by PCR amplification with serotype-specific probes is the current standard technique for DENV serotyping. However, this method is time- and cost-consuming, and rapid detection systems with low cost are desirable. Previously, we developed a prototype serotype-specific immunochromatography system. That system was composed of four strips with four corresponding distinct sample buffers, each specifically detecting a single DENV serotype. In the present study, we improved this system by combining pairs of strips into one lateral-flow cassette each, providing DENV-1 and DENV-2 detection in one device and DENV-3 and DENV-4 detection in a second device; this strategy successfully reduced the required sample volume. Furthermore, we were able to adjust the composition of the sample buffers such that a single sample buffer sufficed for all four DENV serotype detection reactions, allowing much easier handling of the devices. Evaluation of this new device against laboratory and clinical DENV isolates and clinical specimens from DENV-infected individuals showed sensitivity that was comparable to that of our previous version, yielding serotype specificity of 100%. These new devices are expected to be of use in the clinical setting, accelerating both prospective and retrospective epidemiological studies.

登革热病毒(DENV)的四种血清型,即1型至4型(DENV-1至DENV-4),在病毒蛋白的编码氨基酸残基中表现出约60%的同一性。从患者血清标本中提取RNA进行逆转录,然后用血清型特异性探针进行PCR扩增,这是目前登革热病毒血清分型的标准技术。然而,这种方法耗时且成本高,需要低成本的快速检测系统。之前,我们开发了一个血清型特异性免疫层析系统的原型。该系统由四条试纸条和四个相应的不同样品缓冲液组成,每个缓冲液专门检测一种登革热病毒血清型。在本研究中,我们改进了该系统,将条带对组合到一个横向流动盒中,在一个设备中提供DENV-1和DENV-2检测,在另一个设备中提供DENV-3和DENV-4检测;该策略成功地减少了所需的样本量。此外,我们能够调整样品缓冲液的组成,使单个样品缓冲液足以用于所有四种DENV血清型检测反应,从而使设备的处理更加容易。对实验室和临床DENV分离株以及来自DENV感染者的临床标本的评估表明,这种新装置的敏感性与我们以前的版本相当,血清型特异性为100%。这些新设备有望用于临床环境,加速前瞻性和回顾性流行病学研究。
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引用次数: 0
The Role of Surfactants in Stabilizing Fluorescence Anisotropy for Protein-Aptamer Binding Affinity Measurements. 表面活性剂在稳定蛋白质-适体结合亲和力测量中荧光各向异性中的作用。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-06 DOI: 10.3390/bios15120801
Bhagya R Samarakoon, Susan L Bilderback, Rebecca J Whelan

Fluorescence Anisotropy (FA) is a sensitive and efficient technique for quantifying biomolecular interactions, offering advantages such as minimal sample requirements and elimination of separation of bound from unbound species. Thus, it is well suited for aptamer-protein binding affinity studies. However, accurately determining equilibrium dissociation constants (KD) in FA requires low concentrations of fluorescently labeled aptamers to prevent ligand depletion. A significant challenge arises at low aptamer concentrations due to an unexpected and physically nonmeaningful increase in apparent anisotropy, which impairs accurate data fitting. This anomalous increase in apparent anisotropy may arise from non-specific adsorption of aptamers to surfaces. In this study, we investigated the use of non-ionic surfactants to mitigate these effects and stabilize the anisotropy signal at low aptamer concentrations using the thrombin aptamer as a model system. We evaluated the impact of varying concentrations of two surfactants (Tween 20 and Triton X-100) on plots of anisotropy as a function of aptamer concentration and determined aptamer-protein binding affinities. Addition of 0.1% Tween 20 corrects the anomalous increase in anisotropy at low aptamer concentrations, enabling the use of aptamer concentrations as low as 5 nM in binding assays. Triton X-100 was less effective. By incorporating optimized concentrations of Tween 20, we demonstrated improved assay reproducibility and accuracy in KD determination, expanding the dynamic range of usable aptamer concentrations in FA-based binding affinity studies. Similar benefits were observed with the clinically relevant aptamer s10yh2 and human serum albumin. These findings provide a practical strategy for enhancing the robustness of FA measurements and may be applicable to other aptamer-target systems and high-throughput assay formats.

荧光各向异性(FA)是一种灵敏、高效的定量生物分子相互作用的技术,具有样品需求少、无需分离结合和非结合物种等优点。因此,它非常适合于适体-蛋白结合亲和力的研究。然而,准确测定FA中的平衡解离常数(KD)需要低浓度的荧光标记适体来防止配体耗竭。在适体浓度较低的情况下,由于表观各向异性的意外和物理上无意义的增加,会影响准确的数据拟合,因此会出现重大挑战。这种表观各向异性的异常增加可能是由适配体对表面的非特异性吸附引起的。在本研究中,我们以凝血酶适体为模型系统,研究了使用非离子表面活性剂来减轻这些影响,并在低适体浓度下稳定各向异性信号。我们评估了不同浓度的两种表面活性剂(Tween 20和Triton X-100)对适配体浓度对各向异性图的影响,并确定了适配体与蛋白质的结合亲和力。添加0.1%的吐温20纠正了低适体浓度下各向异性的异常增加,使适体浓度低至5 nM时可以在结合试验中使用。Triton X-100效果较差。通过加入优化的Tween 20浓度,我们证明了KD测定的重现性和准确性,扩大了基于fa的结合亲和性研究中可用适配体浓度的动态范围。与临床相关的适体s10yh2和人血清白蛋白也观察到类似的益处。这些发现为增强FA测量的稳健性提供了一种实用的策略,并可能适用于其他适体靶系统和高通量分析格式。
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引用次数: 0
Features of Chaperone Induction by 9-Aminoacridine and Acridine Orange. 9-氨基吖啶和吖啶橙诱导伴侣的特性。
IF 5.6 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-06 DOI: 10.3390/bios15120800
Vadim V Fomin, Svetlana V Smirnova, Sergey V Bazhenov, Aminat G Kurkieva, Nikolay A Bondarev, Daria M Egorenkova, Daniil I Sakharov, Ilya V Manukhov, Serikbai K Abilev

The fluorescent dyes 9-aminoacridine (9-AA) and acridine orange (AO) are known mutagens that induce frameshift mutations in cells by intercalating between DNA bases. However, these chemicals can also affect other cellular components, such as proteins. In this study, we tested the ability of 9-AA and AO to induce heat shock in bacteria using the following methods: lux-biosensors based on Escherichia coli cells with the luxCDABE genes transcriptionally fused to heat shock-specific inducible promoters, RT-qPCR, and nanoDSF. We demonstrated that acridine dyes not only induce mutagenesis but also cause heat shock in bacterial cells. AO significantly reduced the melting temperature of proteins and strongly activated σE- and σ32-dependent promoters, but not PluxC, which is activated by elevated temperatures via a different mechanism. In contrast, 9-AA weakly denatured the proteins and induced the σE-dependent promoter; however, it activated the σ32-dependent promoters and PluxC, supporting the hypothesis that the σ32 heat shock response system is activated via hairpin RNA denaturation by 9-AA. The study on the application of lux-biosensors was hampered by the high general toxicity and luminescence shielding effect of AO, and RT-qPCR's sensitivity was insufficient for detection of the response to 9-AA. Thus, methodologically, it is justified to conduct a comprehensive study of substances that cause heat shock or affect bioluminescence by both RT-qPCR and lux-biosensors.

荧光染料9-氨基吖啶(9-AA)和吖啶橙(AO)是已知的诱变剂,通过插入DNA碱基之间诱导细胞内的移码突变。然而,这些化学物质也会影响其他细胞成分,比如蛋白质。在本研究中,我们使用以下方法测试了9-AA和AO诱导细菌热休克的能力:基于大肠杆菌细胞的luxCDABE基因转录融合到热休克特异性诱导启动子的lux-生物传感器,RT-qPCR和nanoDSF。我们证明吖啶染料不仅能诱导细菌细胞诱变,还能引起热休克。AO显著降低了蛋白质的熔融温度,并对σE-和σ32依赖性启动子有较强的激活作用,但对PluxC没有明显的激活作用。相反,9-AA弱变性蛋白,诱导了σ e依赖性启动子;然而,它激活了σ32依赖性启动子和PluxC,支持了9-AA通过发夹RNA变性激活σ32热休克反应系统的假设。由于AO具有较高的一般毒性和发光屏蔽效应,RT-qPCR的灵敏度不足以检测对9-AA的反应,因此阻碍了lux-生物传感器的应用研究。因此,在方法学上,通过RT-qPCR和lux-生物传感器对引起热休克或影响生物发光的物质进行全面研究是合理的。
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