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The Research Progress of Single-Molecule Sequencing and Its Significance in Nucleic Acid Metrology.
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-25 DOI: 10.3390/bios15010004
Yajun Wang, Jingjing Liu, Zhendong Wang, Mei Zhang, Yongzhuo Zhang

Single-molecule sequencing technology, a novel method for gene sequencing, utilizes nano-sized materials to detect electrical and fluorescent signals. Compared to traditional Sanger sequencing and next-generation sequencing technologies, it offers significant advantages, including ultra-long read lengths, rapid sequencing, and the absence of amplification steps, making it widely applicable across various fields. By examining the development and components of single-molecule sequencing technology, it becomes clear that its unique characteristics provide new opportunities for advancing metrological traceability. Notably, its direct detection capabilities offer a novel approach to nucleic acid metrology. This paper provides a detailed overview of library construction, signal generation and detection, and data analysis methods in single-molecule sequencing and discusses its implications for nucleic acid metrology.

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引用次数: 0
Recent Advances in Biosensors Using Enzyme-Stabilized Gold Nanoclusters.
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-24 DOI: 10.3390/bios15010002
Myeong-Jun Lee, Jeong-Hyeop Shin, Seung-Hun Jung, Byung-Keun Oh

Recently, gold nanoclusters (AuNCs) have been widely used in biological applications due to their ultrasmall size, ranging within a few nanometers; large specific surface area; easy functionalization; unique fluorescence properties; and excellent conductivity. However, because they are unstable in solution, AuNCs require stabilization by using ligands such as dendrimers, peptides, DNA, and proteins. As a result, the properties of AuNCs and their formation are determined by the ligand, so the selection of the ligand is important. Of the many ligands implemented, enzyme-stabilized gold nanoclusters (enzyme-AuNCs) have attracted increasing attention for biosensor applications because of the excellent optical/electrochemical properties of AuNCs and the highly target-specific reactions of enzymes. In this review, we explore how enzyme-AuNCs are prepared, their properties, and the various types of enzyme-AuNC-based biosensors that use optical and electrochemical detection techniques. Finally, we discuss the current challenges and prospects of enzyme-AuNCs in biosensing applications. We expect this review to provide interdisciplinary knowledge about the application of enzyme-AuNC-based materials within the biomedical and environmental fields.

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引用次数: 0
Microspectrometer-Enabled Real-Time Concentration Monitoring in the Microfluidic Protein Enrichment Chip.
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-24 DOI: 10.3390/bios15010001
Dong-Li Li, Wen-Shu Huang, Yi Hung Wu, Chun-Ping Jen

This study presents a novel microspectrometer-integrated microfluidic system for real-time protein concentration monitoring. The device employs electrokinetic principles for efficient protein preconcentration in a PDMS and Nafion film channel. Using FITC-labeled BSA as a model protein, the system demonstrated a linear correlation between protein concentration and absorbance at 491 nm. Notably, it achieved a 833-fold concentration increase from an initial 10 nM within 20 min. The compact microspectrometer system offers enhanced accuracy and sensitivity compared to traditional fluorescence microscopy methods. This innovation presents a promising solution for portable and point-of-care diagnostic applications, facilitating timely disease detection and monitoring. The findings highlight the potential for this technology to advance protein analysis and biomarker discovery in clinical settings, potentially improving patient outcomes through enhanced diagnostic capabilities.

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引用次数: 0
Recent Status on Lactate Monitoring in Sweat Using Biosensors: Can This Approach Be an Alternative to Blood Detection?
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-24 DOI: 10.3390/bios15010003
Leonardo Messina, Maria Teresa Giardi

Recent studies have shown that lactate is a molecule that plays an indispensable role in various physiological cellular processes, such as energy metabolism and signal transductions related to immune and inflammatory processes. For these reasons, interest in its detection using biosensors for non-invasive analyses of sweat during sports activity and in clinical reasons assessments has increased. In this minireview, an in-depth study was carried out on biosensors that exploited using electrochemical methods and innovative nanomaterials for lactate detection in sweat. This detection of lactate by biosensors in the sweat method seems to be feasible and highly desirable. From this commentary analysis, we can conclude that the correlation between lactate concentrations in sweat and blood is not yet clear, and studies are needed to clarify some key issues essential for the future application of this technology.

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引用次数: 0
Electrochemical Magnetic Immunoassay for the Determination of the Fish Allergen β-Parvalbumin. 电化学磁免疫法测定鱼类变应原β-小白蛋白。
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-23 DOI: 10.3390/bios14120639
José Pedro Rocha, Maria Freitas, Dulce Geraldo, Fátima Bento, Cristina Delerue-Matos, Henri P A Nouws

β-parvalbumin (β-PV) is the primary fish allergen responsible for most allergic reactions in individuals sensitive to fish. To ensure food safety, a sandwich-based magnetic immunoassay was developed using maleimide-functionalized magnetic beads (NH-MBs). Specific anti-β-PV antibodies were immobilized on these MBs, and a screen-printed carbon electrode was employed as the electrochemical transducer. A linear concentration range from 10 to 1000 ng/mL, a limit of detection of 1.8 ng/mL, and a limit of quantification of 7.1 ng/mL were achieved. Nineteen commercial food samples were analyzed to assess the potential of the sensor for routine use in food quality control. Important factors such as protein source and food processing (e.g., boiling, grilling, and frying) and preservation (e.g., in oil, and vacuum) were evaluated. The validated results confer the usefulness of the assay for food quality control.

β-小白蛋白(β-PV)是鱼类过敏反应的主要过敏原,对鱼类敏感的人会产生大多数过敏反应。为保证食品安全,采用马来酰亚胺功能化磁珠(nh - mb)研制了一种基于三明治的磁免疫分析法。将特异性抗β- pv抗体固定在这些MBs上,并使用丝网印刷的碳电极作为电化学换能器。线性浓度范围为10 ~ 1000 ng/mL,检测限为1.8 ng/mL,定量限为7.1 ng/mL。对19份商业食品样品进行了分析,以评估该传感器在食品质量控制中常规应用的潜力。重要的因素,如蛋白质来源和食品加工(如煮沸、烧烤和油炸)和保存(如在油中和真空中)进行了评估。验证结果表明该方法可用于食品质量控制。
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引用次数: 0
BODIPY-Based Ratiometric Fluorescent Probe for Sensing Peroxynitrite in Inflammatory Cells and Tissues. 基于bodipi的比例荧光探针检测炎症细胞和组织中的过氧亚硝酸盐。
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-22 DOI: 10.3390/bios14120638
Qian Wu, Ziwei Hu, Guoyang Zhang, Yulong Jin, Zhuo Wang

Peroxynitrite (ONOO-) plays an important role in many physiological and pathological processes. Excessive ONOO- in cells leads to oxidative stress and inflammation. However, precise monitoring of ONOO- levels in specific organelles (e.g., mitochondria) is still lacking and urgently needed. Herein, we rationally designed a mitochondria-targeted ratiometric fluorescent probe, MOBDP-I, for imaging of ONOO- in the mitochondria of inflammatory cells and model mice. This probe, MOBDP-I, was synthesized by conjugating a BODIPY fluorophore to a mitochondria-targeting moiety-indole-salt group by a carbon-carbon double bond (C=C). In the presence of ONOO-, the C=C bond between the BODIPY backbone and the indole-salt group was oxidized and broken, leading to an 18-fold enhancement of fluorescence at 510 nm, along with a significant fluorescence decrease at 596 nm. The ratiometric response property bestowed the probe with advantages in the precise quantification of ONOO- in cells, thus allowing estimation of the extent of inflammation in living cells and mouse models of rheumatoid arthritis, peritonitis, and brain inflammation. MOBDP-I could act as an effective molecular tool to study the relationship between ONOO- and the occurrence and development of inflammatory diseases.

过氧亚硝酸盐(ONOO-)在许多生理和病理过程中起着重要作用。过量的ONOO- in细胞会导致氧化应激和炎症。然而,对特定细胞器(如线粒体)中ONOO-水平的精确监测仍然缺乏,并且迫切需要。为此,我们合理设计了一种线粒体靶向比例荧光探针MOBDP-I,用于成像炎症细胞和模型小鼠线粒体中的ONOO-。该探针MOBDP-I是通过碳碳双键(C=C)将BODIPY荧光团与线粒体靶向片段-吲哚-盐基团偶联而合成的。在ONOO-存在下,BODIPY主链与吲哚-盐基团之间的C=C键被氧化断裂,导致510 nm处荧光增强18倍,596 nm处荧光明显减弱。比率反应特性使探针在精确定量细胞中的ONOO-方面具有优势,从而可以估计类风湿关节炎、腹膜炎和脑炎症的活细胞和小鼠模型中的炎症程度。MOBDP-I可作为研究ONOO-与炎性疾病发生发展关系的有效分子工具。
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引用次数: 0
Competitive Electrochemical Apta-Assay Based on cDNA-Ferrocene and MXenes for Staphylococcus aureus Surface Protein A Detection. 基于dna -二茂铁和MXenes的竞争电化学apta法检测金黄色葡萄球菌表面蛋白A。
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-21 DOI: 10.3390/bios14120636
Ana-Maria Tătaru, Alexandra Canciu, Alin-Dan Chiorean, Ioana Runcan, Alexandru Radu, Mădălina Adriana Bordea, Maria Suciu, Mihaela Tertiș, Andreea Cernat, Cecilia Cristea

Staphylococcus aureus (S. aureus) represents one of the most frequent worldwide causes of morbidity and mortality due to an infectious agent. It is a part of the infamous ESKAPE group, which is highly connected with increased rates of healthcare-associated infections and antimicrobial resistance. S. aureus can cause a large variety of diseases. Protein A (PrA) is a cell-wall-anchored protein of S. aureus with multiple key roles in colonization and pathogenesis and can be considered as a marker of S. aureus. The development of aptasensors, having an aptamer as a specific biorecognition element, increases selectivity, especially when working with complex matrices. The association with state-of-the-art materials, such as MXenes, can further improve the analytical performance. A competitive aptasensor configuration based on a ferrocene (Fc)-labeled cDNA hybridized (cDNA-Fc S13) on a specific aptamer (APT) for PrA in the presence of MXene nanosheets was designed for the indirect detection of S. aureus. The aptasensor displayed a linear range of 10-125 nM, an LOD of 3.33 nM, and a response time under 40 min. This configuration has been tested in real samples from volunteers diagnosed with S. aureus infections with satisfactory results, enabling the perspective to develop decentralized devices for the rapid detection of bacterial strains.

金黄色葡萄球菌(金黄色葡萄球菌)是世界范围内最常见的致病和死亡原因之一。它是臭名昭著的ESKAPE集团的一部分,该集团与医疗保健相关感染率上升和抗菌素耐药性密切相关。金黄色葡萄球菌可引起多种疾病。蛋白A (PrA)是金黄色葡萄球菌的细胞壁锚定蛋白,在定植和发病过程中具有多种关键作用,可以被认为是金黄色葡萄球菌的标志物。适体传感器的发展,具有适体作为一个特定的生物识别元素,增加了选择性,特别是在复杂的矩阵工作时。结合最先进的材料,如MXenes,可以进一步提高分析性能。在MXene纳米片存在的情况下,设计了一种基于二茂铁(Fc)标记的cDNA杂交(cDNA-Fc S13)在PrA特异性适配体(APT)上的竞争性适配体结构,用于间接检测金黄色葡萄球菌。该传感器的线性范围为10-125 nM, LOD为3.33 nM,响应时间小于40 min。该配置已在被诊断为金黄色葡萄球菌感染的志愿者的实际样品中进行了测试,结果令人满意,使该视角能够开发用于快速检测细菌菌株的分散设备。
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引用次数: 0
A Novel Approach Using LuxSit-i Enhanced Toehold Switches for the Rapid Detection of Vibrio parahaemolyticus. 一种利用LuxSit-i增强支点开关快速检测副溶血性弧菌的新方法。
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-21 DOI: 10.3390/bios14120637
Xiaodan Kang, Chen Zhao, Shuting Chen, Shuran Yang, Xi Zhang, Bin Xue, Chenyu Li, Shang Wang, Xiaobo Yang, Chao Li, Zhigang Qiu, Jingfeng Wang, Zhiqiang Shen

Vibrio parahaemolyticus (V. parahaemolyticus) is a significant concern, as it can cause severe infections and hemolytic trauma. Given its prevalence in seawater and coastal seafood, it poses a substantial risk as a foodborne pathogen. Biosensor-based detection technology has been continuously evolving, and toehold switches have emerged as a promising area within it, especially in the detection of RNA viruses. Here, we have developed a cell-free toehold switch sensor for V. parahaemolyticus detection. Traditional toehold switch detection methods usually use green fluorescent protein (GFP) or enzyme LacZ as the output signal, with an incubation time as long as 2 h, and are also mainly applied to the detection of RNA viruses. In this study, we introduced a novel, artificially designed luciferase (LuxSit-i) as an output signal and constructed toehold switches with two different output signals (sfGFP, LuxSit-i), aimed at reducing the incubation time of toehold switches. Moreover, to further improve the detection process, we separately utilize recombinase polymerase amplification (RPA) and nucleic acid sequence-based amplification (NASBA) to amplify dead and live bacterial suspensions for detection and attempt to distinguish between dead and live bacteria. This study provided a convenient, rapid, and accurate method for the on-site detection of V. parahaemolyticus, especially beneficial for resource-limited settings. By eliminating the requirement for specialized facilities and personnel, this system has the potential to be a valuable tool in improving public health responses, especially in developing regions.

副溶血性弧菌(V.副溶血性弧菌)是一个重要的问题,因为它可以引起严重的感染和溶血性创伤。鉴于其在海水和沿海海鲜中的普遍存在,它作为食源性病原体具有重大风险。基于生物传感器的检测技术一直在不断发展,而脚点开关已成为其中一个有前途的领域,特别是在RNA病毒的检测中。在这里,我们开发了一种用于副溶血性弧菌检测的无细胞脚点开关传感器。传统的支点开关检测方法通常采用绿色荧光蛋白(GFP)或酶LacZ作为输出信号,孵卵时间长达2 h,也主要应用于RNA病毒的检测。在本研究中,我们引入了一种新颖的人工设计的荧光素酶(LuxSit-i)作为输出信号,并构建了两种不同输出信号(sfGFP, LuxSit-i)的脚点开关,旨在缩短脚点开关的孵生时间。此外,为了进一步改进检测过程,我们分别利用重组酶聚合酶扩增(RPA)和核酸序列扩增(NASBA)扩增死菌和活菌悬浮液进行检测,并试图区分死菌和活菌。本研究为现场检测副溶血性弧菌提供了一种方便、快速、准确的方法,尤其有利于资源有限的地区。通过消除对专门设施和人员的要求,该系统有可能成为改善公共卫生反应的宝贵工具,特别是在发展中区域。
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引用次数: 0
Evaluation of Photoplethysmography-Based Monitoring of Respiration Rate During High-Intensity Interval Training: Implications for Healthcare Monitoring. 在高强度间歇训练中基于光容积脉搏波的呼吸率监测的评估:对医疗监测的意义。
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-20 DOI: 10.3390/bios14120631
Marjolein Muller, Kambiz Ebrahimkheil, Tara Vijgeboom, Casper van Eijck, Eelko Ronner

Monitoring respiration rate (RR) is crucial in various healthcare settings, particularly during demanding (physical) activities where respiratory dynamics are critical indicators of health status. This study aimed to evaluate the accuracy of photoplethysmography (PPG)-based monitoring of RR during high-intensity interval training (HIIT) and its potential applications in healthcare. Between January and March 2024, healthy volunteers participated in a cycling HIIT session with increasing resistance levels. The RR measurements obtained using the PPG-based CardioWatch 287-2 (Corsano Health) were compared with an ECG patch-derived (Vivalink) reference. Subgroup analyses were conducted based on skin type and sex. A total of 35 participants contributed 1794 paired RR measurements. The PPG algorithm for RR monitoring showed an average root mean square (Arms) error of 2.13 breaths per minute (brpm), a bias of -0.09 brpm, and limits of agreement (LoA) from -4.28 to 4.09 brpm. Results were consistent across the different demographic subgroups. The CardioWatch 287-2 therefore demonstrated reliable RR monitoring during HIIT, supporting its potential use in healthcare settings for continuous, non-invasive respiratory monitoring, particularly in physical rehabilitation and chronic respiratory condition management.

监测呼吸速率(RR)在各种医疗保健环境中至关重要,特别是在高要求(体力)活动期间,呼吸动力学是健康状况的关键指标。本研究旨在评估基于光容积脉搏波(PPG)监测高强度间歇训练(HIIT)期间RR的准确性及其在医疗保健中的潜在应用。在2024年1月至3月期间,健康志愿者参加了阻力水平不断增加的自行车HIIT训练。使用基于ppg的CardioWatch 287-2 (Corsano Health)获得的RR测量值与ECG贴片衍生(Vivalink)参考值进行比较。根据皮肤类型和性别进行亚组分析。共有35名参与者提供了1794对RR测量。用于RR监测的PPG算法显示平均均方根误差(Arms)为2.13次呼吸/分钟(brpm),偏差为-0.09 brpm,一致性限制(LoA)为-4.28至4.09 brpm。结果在不同的人口亚组中是一致的。因此,CardioWatch 287-2在HIIT期间显示了可靠的RR监测,支持其在医疗机构中用于连续、无创呼吸监测的潜在应用,特别是在身体康复和慢性呼吸疾病管理中。
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引用次数: 0
Exploring the Interaction of Biotinylated FcGamma RI and IgG1 Monoclonal Antibodies on Streptavidin-Coated Plasmonic Sensor Chips for Label-Free VEGF Detection. 探索生物素化FcGamma RI和IgG1单克隆抗体在链亲和素包被等离子体传感器芯片上的相互作用,用于无标记VEGF检测。
IF 4.9 3区 工程技术 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-12-20 DOI: 10.3390/bios14120634
Soodeh Salimi Khaligh, Fahd Khalid-Salako, Hasan Kurt, Meral Yüce

Vascular endothelial growth factor (VEGF) is a critical angiogenesis biomarker associated with various pathological conditions, including cancer. This study leverages pre-biotinylated FcγRI interactions with IgG1-type monoclonal antibodies to develop a sensitive VEGF detection method. Utilizing surface plasmon resonance (SPR) technology, we characterized the binding dynamics of immobilized biotinylated FcγRI to an IgG1-type antibody, Bevacizumab (AVT), through kinetic studies and investigated suitable conditions for sensor surface regeneration. Subsequently, we characterized the binding of FcγRI-captured AVT to VEGF, calculating kinetic constants and binding affinity. A calibration curve was established to analyze the VEGF quantification capacity and accuracy of the biosensor, computing the limits of blank, detection, and quantification at a 95% confidence interval. Additionally, the specificity of the biosensor for VEGF over other protein analytes was assessed. This innovative biomimetic approach enabled FcγRI-mediated site-specific AVT capture, establishing a stable and reusable platform for detecting and accurately quantifying VEGF. The results indicate the effectiveness of the plasmonic sensor platform for VEGF detection, making it suitable for research applications and, potentially, clinical diagnostics. Utilizing FcγRI-IgG1 antibody binding, this study highlights the industrial and clinical value of advanced biosensing technologies, offering insights to enhance therapeutic monitoring and improve outcomes in anti-VEGF therapies.

血管内皮生长因子(VEGF)是一种重要的血管生成生物标志物,与包括癌症在内的各种病理状况有关。本研究利用预生物素化fc γ - ri与igg1型单克隆抗体的相互作用,建立了一种敏感的VEGF检测方法。利用表面等离子体共振(SPR)技术,通过动力学研究表征了固定化生物素化fc - γ - ri与igg1型抗体贝伐单抗(AVT)的结合动力学,并研究了传感器表面再生的适宜条件。随后,我们表征了fc - γ - ri捕获的AVT与VEGF的结合,计算了动力学常数和结合亲和力。建立校准曲线,分析生物传感器的VEGF定量能力和准确性,在95%置信区间计算空白限、检测限和定量限。此外,生物传感器对VEGF的特异性优于其他蛋白质分析物进行了评估。这种创新的仿生方法使fc - γ - ri介导的位点特异性AVT捕获成为可能,为检测和准确定量VEGF建立了稳定且可重复使用的平台。结果表明,等离子体传感器平台用于VEGF检测的有效性,使其适用于研究应用,并可能用于临床诊断。利用FcγRI-IgG1抗体结合,本研究突出了先进生物传感技术的工业和临床价值,为加强治疗监测和改善抗vegf治疗结果提供了见解。
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引用次数: 0
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