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Unraveling atomic complexity from frozen samples. 从冷冻样品中揭示原子复杂性。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-18 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000303
Yasmeen N Ruma, Brent L Nannenga, Tamir Gonen

Cryo-electron microscopy (cryo-EM) is a significant driver of recent advances in structural biology. Cryo-EM is comprised of several distinct and complementary methods, which include single particle analysis, cryo-electron tomography, and microcrystal electron diffraction. In this Perspective, we will briefly discuss the different branches of cryo-EM in structural biology and the current challenges in these areas.

低温电子显微镜(cryo-EM)是结构生物学最新进展的重要驱动因素。低温电子显微镜是由几个不同的和互补的方法,其中包括单粒子分析,低温电子断层扫描和微晶电子衍射。在本展望中,我们将简要讨论低温电镜在结构生物学中的不同分支以及这些领域当前面临的挑战。
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引用次数: 0
A new chapter for RCSB Protein Data Bank Molecule of the Month in 2025. 2025年RCSB蛋白质数据库月度分子的新篇章。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-18 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000302
Janet Iwasa, David S Goodsell, Stephen K Burley, Christine Zardecki

The online Molecule of the Month series authored by David S. Goodsell and published by the Research Collaboratory for Structural Biology Protein Data Bank at PDB101.RCSB.org has highlighted stories about the biomolecular structures driving fundamental biology, biomedicine, bioenergy, and biotechnology since January 2000. A new chapter begins in 2025: Janet Iwasa has taken over as the series creator of stories about critically important biological macromolecules in a rapidly changing world.

由结构生物学研究合作实验室蛋白质数据库(PDB101.RCSB.org)出版的David S. Goodsell撰写的月度在线分子系列突出了自2000年1月以来推动基础生物学、生物医学、生物能源和生物技术的生物分子结构的故事。2025年,新的篇章开始了:珍妮特·伊瓦萨(Janet Iwasa)接任系列故事的创造者,讲述了在快速变化的世界中至关重要的生物大分子。
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引用次数: 0
Characterization of the photoelectron circular dichroism of fixed-in-space molecules through an asymmetry of the ionic potential. 通过离子势的不对称性表征空间固定分子的光电子圆二色性。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-18 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000300
Eric Kutscher, Anton N Artemyev, Philipp V Demekhin

Photoelectron circular dichroism (PECD) in the ionization of chiral molecules by circularly polarized radiation is a well-established tool for chiral recognition in the gas phase. The effect consists in a forward-backward asymmetry in angular emission distributions of photoelectrons with respect to the light propagation direction, which survives averaging over molecular orientations. Its magnitude is governed by the ability of the outgoing photoelectron to probe an asymmetry of the ionic potential by multiple scattering effects, and it can be significantly enhanced by fixing molecular orientation in space. Even achiral fixed-in-space molecules can exhibit such a forward-backward asymmetry in the photoemission. In the present work, we establish a qualitative correspondence between the PECD in one-photon ionization of fixed-in-space molecules and a degree of the asymmetry of their ionic potential. For this purpose, we introduce an enantiosensitive dichroic characteristic of the ionic potential, which describes a physical mechanism behind the forward-backward asymmetry in the photoemission from fixed-in-space molecules ionized by circularly polarized light. This characteristic, as a function of molecular orientation angles, can be compared to the respective PECD landscape. The present findings are exemplified by several applications to achiral and chiral species.

圆极化辐射电离手性分子的光电子圆二色性(PECD)是一种成熟的气相手性识别工具。这种效应包括光电子的角发射分布相对于光传播方向的前后不对称,这种不对称在分子取向上平均下来。它的大小取决于出射光电子通过多重散射效应探测离子势的不对称性的能力,并且可以通过在空间中固定分子取向来显着增强它。即使是非手性的空间固定分子在光发射中也会表现出这种前后不对称。在本研究中,我们建立了固定空间分子单光子电离的PECD与它们的离子势的一定程度的不对称性之间的定性对应关系。为此,我们引入了离子势的对映敏感二色性特征,它描述了在圆偏振光电离的空间固定分子的光发射中前后不对称的物理机制。这种特性作为分子取向角的函数,可以与各自的PECD景观进行比较。本文的研究结果在非手性和手性物种上得到了应用。
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引用次数: 0
Discovery of a new zinc oxide semiconductor: 21R polytype. 一种新型氧化锌半导体的发现:21R多型。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-27 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000296
Matej Fonović, Jelena Zagorac, Maria Čebela, Dragana Jordanov, Dejan Zagorac

Zinc oxide (ZnO) is a notable semiconductor with a range of interesting electronic and optical properties. Polytypic behavior of crystal structures can strongly affect the properties of materials, especially in ZnO. We report the first prediction of a new 21R polytype in zinc oxide with advanced properties. Ab initio calculations were carried out using two-hybrid functionals: HSE06 and PBE0. Structural properties of different ZnO polytypes were investigated, and theoretical data concurred with experimental results. This can be further exploited for various applications based on their unique properties. Electronic properties were studied using band structures and density of states (DOS). Present DFT calculations agree very well with previous calculations and measurements of known ZnO polytypes, and the new 21R polytype is found as a direct band gap semiconductor. The size of the band gap in the case of the hybrid HSE06 functional is calculated to be 2.79 eV and with PBE0 is 3.42 eV. Understanding the structure-property relationship helps in tailoring ZnO for specific applications and optimizing its performance in various technological contexts, especially as an advanced semiconductor material, with possible applications such as 0D, 1D, 2D, and 3D materials.

氧化锌(ZnO)是一种引人注目的半导体,具有一系列有趣的电子和光学性质。晶体结构的多型行为会强烈地影响材料的性能,尤其是在ZnO中。我们首次预测了具有先进性能的氧化锌中的新型21R多型。采用双混合泛函:HSE06和PBE0进行从头计算。研究了不同ZnO多型的结构特性,理论数据与实验结果相吻合。这可以根据其独特的属性进一步用于各种应用程序。利用能带结构和态密度(DOS)研究了其电子性能。目前的DFT计算与已知ZnO多型的计算和测量结果吻合良好,发现新的21R多型是一种直接带隙半导体。混合HSE06的带隙大小计算为2.79 eV,而PBE0的带隙大小为3.42 eV。了解结构-性能关系有助于为特定应用定制氧化锌并优化其在各种技术背景下的性能,特别是作为先进的半导体材料,具有可能的应用,如0D, 1D, 2D和3D材料。
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引用次数: 0
Probing optically driven K3C60 thin films with an ultrafast voltmeter. 利用超快电压计探测光驱动 K3C60 薄膜。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-26 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000295
J D Adelinia, E Wang, M Chavez-Cervantes, T Matsuyama, M Fechner, M Buzzi, G Meier, A Cavalleri

Optically enhanced superconductivity in K3C60 is supported by transient optical spectra, by pressure responses, and by ultrafast nonlinear transport measurements. However, the underlying physics and in fact the similarity or dissimilarity to most properties of equilibrium superconductivity are not clear. In this paper, we study the ultrafast voltage response of optically driven K3C60 thin films. Photo-conductive switches are used to measure changes in voltage as a function of time after irradiation, both below and above Tc. These measurements can be understood if one considers the role of granularity in the photo-induced transport response. They reveal fast voltage changes associated with the kinetic inductance of the in-grain carriers and a slower response that may be attributed to Josephson dynamics at the weak links. Fits to the data yield estimates of the in-grain photo-induced superfluid density after the drive and the dynamics of phase slips at the weak links. This work underscores the increasing ability to make electrical measurements at ultrafast speeds in optically driven quantum materials and demonstrates a striking new platform for optoelectronic device applications.

瞬态光谱、压力响应和超快非线性输运测量支持了K3C60的光增强超导性。然而,其基本的物理性质以及与大多数平衡超导性质的相似或不同之处尚不清楚。本文研究了光驱动K3C60薄膜的超快电压响应。光导开关用于测量辐照后电压随时间的变化,包括低于和高于Tc的电压。如果考虑颗粒度在光诱导输运响应中的作用,这些测量结果就可以被理解。他们揭示了与颗粒内载流子的动态电感相关的快速电压变化,以及可能归因于薄弱环节约瑟夫森动力学的较慢响应。拟合了驱动后晶粒内光致超流体密度的数据屈服估计和弱环节相滑移动力学。这项工作强调了在光驱动量子材料中以超快速度进行电测量的能力日益增强,并为光电器件应用展示了一个引人注目的新平台。
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引用次数: 0
Magnetization dynamics: From the Landau-Lifschitz equation to spintronics. 磁化动力学:从朗道-利夫希茨方程到自旋电子学。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-25 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000290
Yves Acremann

Magnetic storage devices are still an essential part of our information society, and magnetic random access memory could bridge the gap between storage and memory devices. Jo Stöhr pioneered the study of magnetism and its dynamics by time-resolved x-ray microscopy and spectroscopy. In this paper, we focus on the applied aspects of spin dynamics and on how time-resolved circular dichroism and x-ray microscopy helped develop magnetic random access memory.

磁性存储设备仍然是我们信息社会的重要组成部分,磁性随机存取存储器可以弥合存储设备和记忆设备之间的差距。Jo Stöhr率先通过时间分辨x射线显微镜和光谱学研究磁性及其动力学。在本文中,我们关注自旋动力学的应用方面,以及时间分辨圆二色性和x射线显微镜如何帮助开发磁随机存取存储器。
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引用次数: 0
Simultaneous mapping of the ultrafast time and fluence dependence of the laser-induced insulator-to-metal transition in magnetite. 磁铁矿中激光诱导绝缘体到金属跃迁的超快时间和通量依赖关系的同步映射。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-20 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000288
J O Schunck, P S Miedema, R Y Engel, S Dziarzhytski, G Brenner, N Ekanayake, C-F Chang, P Bougiatioti, F Döring, B Rösner, C David, C Schüßler-Langeheine, M Beye

Pump-probe methods are a ubiquitous tool in the field of ultrafast dynamic measurements. In recent years, x-ray free-electron laser experiments have gained importance due to their ability to probe with high chemical selectivity and at atomic length scales. Measurements are typically repeated many thousands of times to collect sufficient statistics and vary parameters like delay or fluence, necessitating that initial conditions are restored each time. An alternative is presented by experiments which measure the relevant parameters in a single shot. Here, we present a time-to-space mapping imaging scheme that enables us to record a range of delays and laser fluences in any single shot of the x-ray probe. We demonstrate the use of this scheme by mapping the ultrafast dynamics of the optically induced insulator-to-metal Verwey transition in a magnetite thin film, probed by soft x-ray resonant diffraction. By extrapolating our results toward the conditions found at x-ray free-electron lasers with higher photon energy, we demonstrate that the presented data could be recorded in a single shot.

泵-探针法是超快动态测量领域中普遍使用的一种工具。近年来,x射线自由电子激光实验因其具有高化学选择性和原子长度尺度的探测能力而受到重视。测量通常要重复数千次,以收集足够的统计数据,并改变延迟或影响等参数,因此每次都需要恢复初始条件。通过实验提出了一种替代方法,即在单次射击中测量相关参数。在这里,我们提出了一种时空映射成像方案,使我们能够在x射线探针的任何单次射击中记录一系列延迟和激光影响。我们通过绘制磁铁矿薄膜中光诱导绝缘体到金属的Verwey跃迁的超快动力学,用软x射线共振衍射探测,证明了该方案的使用。通过将我们的结果外推到具有更高光子能量的x射线自由电子激光器的条件,我们证明了所呈现的数据可以在单次射击中记录。
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引用次数: 0
Ultrafast-induced coherent acoustic phonons in the two-dimensional magnet CrSBr. 二维磁体 CrSBr 中的超快诱导相干声子。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-20 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000266
Jayajeewana N Ranhili, Sumit Khadka, Junjie Li, John Cenker, Alberto M Ruiz, Andrei Shumilin, José J Baldoví, Ka Shen, Mikhail Fedurin, Mark Palmer, Daniel G Chica, Paul Byaruhanga, Shuo Chen, Xiaodong Xu, Xavier Roy, Byron Freelon

Magnetism in two-dimensional (2D) van der Waals (vdW) crystals offers promising new directions for low-dimensional physics and devices. In this work, mega-electron volt (MeV) ultrafast electron diffraction was employed to investigate the ultrafast atomic dynamics of a novel, 2D vdW magnetic single-crystal CrSBr. Femtosecond (fs) optical pump pulses excited non-equilibrium atomic displacements shown to be coherent acoustic phonons (CAPs). Phonon frequencies were extracted by analyzing oscillations of different Bragg peak (BP) intensities and were determined to be GHz acoustic disturbances that propagated as strain waves. Phonon modes exhibit anisotropy with respect to the a and b crystal axes. Subharmonic phonon frequencies were also observed, and this provided a signature of nonlinear oscillatory coupling between the laser-induced pumping phonon frequency and secondary phonon frequencies. Thus, CrSBr was found to serve as a nonlinear phononic frequency converter. The ultrafast time dependence of the Bragg intensity was simulated by incorporating an oscillating deviation parameter ansatz into expressions for the dynamical scattering intensity yielded excellent modeling of the ultrafast structural dynamics of the photo-excited 2D crystal. Our work provides a foundation for exploring how fs light pulses can influence phonon dynamics in materials with strong spin-lattice coupling. These results suggest that CAPs can match the magnon frequencies and show the promise of CrSBr for use in optical-to-microwave transducers and phononic devices.

二维(2D)范德华(vdW)晶体中的磁性为低维物理和器件提供了有希望的新方向。在这项工作中,利用兆电子伏(MeV)超快电子衍射研究了一种新型二维vdW磁性单晶CrSBr的超快原子动力学。飞秒(fs)光泵脉冲激发的非平衡原子位移显示为相干声子(CAPs)。通过分析不同Bragg峰(BP)强度的振荡提取声子频率,确定其为以应变波形式传播的GHz声子扰动。声子模相对于a和b晶体轴表现出各向异性。亚谐波声子频率也被观察到,这提供了激光诱导泵浦声子频率和次级声子频率之间非线性振荡耦合的特征。因此,发现CrSBr作为一个非线性声子频率转换器。通过在动态散射强度表达式中加入振荡偏差参数ansatz,模拟了Bragg强度的超快时间依赖性,得到了光激发二维晶体超快结构动力学的良好模型。我们的工作为探索光脉冲如何影响具有强自旋-晶格耦合的材料中的声子动力学提供了基础。这些结果表明,CAPs可以匹配磁振子频率,并显示出CrSBr在光-微波换能器和声子器件中的应用前景。
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引用次数: 0
Implementation and performance of a fiber-coupled CMOS camera in an ultrafast reflective high-energy electron diffraction experiment. 光纤耦合CMOS相机在超快反射高能电子衍射实验中的实现与性能。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-06 eCollection Date: 2025-03-01 DOI: 10.1063/4.0000284
Jonas D Fortmann, Alexander Kaßen, Christian Brand, Thomas Duden, Michael Horn-von Hoegen

The implementation of a monolithic fiber-optically coupled CMOS-based TemCam-XF416 camera into our ultra-high vacuum (UHV) ultrafast reflection high-energy electron diffraction setup is reported. A combination of a pumpable gate valve and a self-built cooling collar allows UHV conditions to be reached without the need to remove the heat-sensitive device. The water-cooled collar is mounted to the camera housing and prevents heating of the camera upon bakeout of the UHV chamber. The TemCam possesses an one order of magnitude higher spatial resolution, which provides 30% higher resolution in reciprocal space than the previously used microchannel plate detector. The low background intensity and the four times larger dynamic range enable analysis of the diffuse intensity of the diffraction pattern like Kikuchi lines and bands. A key advantage over the previous MCP detector is the complete absence of the blooming effect, which enables the quantitative spot profile analysis of the diffraction spots. The inherent light sensitivity in an optical pump experiment can be overcome by subtracting a pump image without a probe, using photons with h ν < 1.12  eV (indirect bandgap of silicon), or shielding any stray light.

本文报道了在超高真空(UHV)超快反射高能电子衍射装置中实现基于cmos的单片光纤耦合TemCam-XF416相机。可泵送闸阀和自建冷却环的组合可以在不需要移除热敏装置的情况下达到特高压条件。水冷环安装在相机外壳上,防止相机在超高压室烘烤时加热。TemCam的空间分辨率提高了一个数量级,与之前使用的微通道板探测器相比,在互易空间的分辨率提高了30%。低背景强度和四倍大的动态范围使分析菊池线和带等衍射图样的漫射强度成为可能。与以前的MCP探测器相比,一个关键的优点是完全没有盛开效应,这使得能够对衍射斑点进行定量的斑点轮廓分析。光泵实验中固有的光敏感性可以通过在没有探针的情况下减去泵图像,使用ν 1.12 eV(硅的间接带隙)的光子,或屏蔽任何杂散光来克服。
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引用次数: 0
Sharing our excitement for structural science through mentorship. 通过指导分享我们对结构科学的兴奋。
IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-10 eCollection Date: 2025-01-01 DOI: 10.1063/4.0000285
Gerald F Audette

One of the most important means by which we can share our enthusiasm for structural science is our mentorship of trainees. Our trainees at all levels gain more than just technical skills from the time we spend with them; they develop their own appreciation and excitement for structural science that they then can spread through their connections and contacts. We play an important role, through our mentorship, in encouraging that excitement, fostering inquiry, and passing on that excitement to others. We often recount where our enthusiasm began, with one or more professors, mentors and/or colleagues whose excitement was infectious and helped us along our own professional journey and development of our own mentorship philosophies. In the current article, I outline how several mentors, including Professors Michael James, Louis Delbaere, Wilson Quail, and others, instilled that excitement for structural science in me and provided examples from which I have developed my perspective on mentorship and how we can pay it forward, supporting and instilling excitement in our trainees.

我们可以分享我们对结构科学的热情的最重要的手段之一是我们对学员的指导。从我们与学员相处的时间里,我们所有层次的学员获得的不仅仅是技术技能;他们培养了自己对结构科学的欣赏和兴奋,然后他们可以通过他们的联系和接触传播。我们扮演着重要的角色,通过我们的指导,鼓励这种兴奋,培养探究,并将这种兴奋传递给其他人。我们经常回忆起我们的热情是从哪里开始的,一个或多个教授、导师和/或同事,他们的热情是有感染力的,在我们自己的职业生涯中帮助我们,帮助我们发展自己的导师哲学。在这篇文章中,我概述了几位导师,包括Michael James教授、Louis Delbaere教授、Wilson Quail教授和其他人,是如何给我灌输对结构科学的热情的,并提供了一些例子,从这些例子中我形成了我对导师的看法,以及我们如何将其传递出去,支持并灌输给我们的学员这种热情。
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引用次数: 0
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