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Infection caused by Candida auris: state of the art 由念珠菌引起的感染:最新进展
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2022-01-01 DOI: 10.5943/mycosphere/13/1/10
GD Marena, Gc Carvalho, Lcs Monazzi, T. Maschio-Lima, Mtg De Almeida, Jlm Da Silva, GC Fortunato, Vhs Araújo, Dcv Venancio, MR Chang, M. Chorilli
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引用次数: 0
Taxonomy, phylogeny and divergence times of Polyporus (Basidiomycota) and related genera 担子菌科Polyporus及其相关属的分类、系统发育及分化时代
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2022-01-01 DOI: 10.5943/mycosphere/13/1/1
X. Ji, J. Zhou, C. Song, T. Xu, DM Wu, B. Cui
Polyporus is a taxonomically controversial genus which includes species belonging to six infrageneric groups. Recently, many species of Polyporus have been transferred into other related genera viz. Cerioporus, Favolus, Lentinus, Neofavolus and Picipes based on the phylogenetic and morphological analyses. To ascertain the relationships of Polyporus and its allied genera, eight DNA fragments viz. the internal transcribed spacers 1 and 2 with the 5.8S rDNA (ITS), the nuclear ribosomal large subunit (nLSU), partial translation elongation factor 1-α gene (EF1-α), the mitochondrial small-subunit (mtSSU), the β-tubulin gene (TUB), the gene for RNA polymerase II largest subunit (RPB1), the gene for RNA polymerase II second largest subunit (RPB2) and the nuclear ribosomal small subunit (nSSU), are used in the molecular systematic studies. Phylogenetic analyses were carried out based on two combined datasets (ITS+nLSU) and (ITS+nLSU+EF1α+mtSSU+RPB1+RPB2+nSSU+TUB), and the results indicated that species of Polyporus and its related genera fell into six well supported clades: the picipes clade, the favolus calde, the neofavolus clade, the lentinus clade, the core polyporus clade and the squamosus clade. Moreover, the conserved regions of six DNA fragments (5.8S, nLSU, EF1-α, RPB1, RPB2 and nSSU) were used to analyze the divergence times and evolutionary relationships of Polyporus and its related genera by using BEAST v1.8. Bayesian evolutionary analysis revealed that the ancestor of Polyporales split at about 141.81 Mya, while the mean stem ages of the six major clades of Polyporus and its allied genera were 49–63 Mya. Based on the combined analyses of morphology, phylogenies and divergence times, species in the picipes clade formed the genus Picipes by the coriaceous (fresh) to hard (dry) basidiomata and strongly branched skeleto-binding hyphae; species nested in the favolus clade and the neofavolus clade were separately treated as two distinct genera Favolus and Neofavolus; the polyporoid species in the lentinus clade with central and light-colored stipe and inflated hyphae were transferred into Lentinus, and the core polyporus clade was treated as Polyporus s. str. The squamosus clade contained species belonging to several different genera viz. Datronia, Datroniella, Echinochaete, Mycobonia, Neodatronia, Polyporus s. lat. and Pseudofavolus, but there are no enough efficient morphological evidence to combine all species in the squamosus Mycosphere 13(1): 1–52 (2022) www.mycosphere.org ISSN 2077 7019
水螅属是一个在分类学上有争议的属,它包括属于6个属群的种。近年来,根据系统发育和形态分析,许多种Polyporus被转移到其他相关属,即Cerioporus、Favolus、Lentinus、Neofavolus和Picipes。为确定该属及其亲缘属8个DNA片段,即与5.8S rDNA (its)的内转录间隔子1和2、核糖体大亚基(nLSU)、部分翻译延伸因子1-α基因(EF1-α)、线粒体小亚基(mtSSU)、β-微管蛋白基因(TUB)、RNA聚合酶II最大亚基(RPB1)、RNA聚合酶II第二大亚基(RPB2)和核糖体小亚基(nSSU)。用于分子系统研究。利用ITS+nLSU和ITS+nLSU+EF1α+mtSSU+RPB1+RPB2+nSSU+TUB两组数据进行系统发育分析,结果表明,水蛭属及其近缘属可分为6个支系,即支枝支系、细枝支系、新枝支系、香菇支系、核心支系和鳞片支系。此外,采用BEAST v1.8软件对6个DNA片段(5.8S、nLSU、EF1-α、RPB1、RPB2和nSSU)的保守区进行分析,分析了Polyporus及其相关属的分化时间和进化关系。贝叶斯进化分析表明,水螅门的祖先在141.81亿a左右分裂,而水螅门及其近属的6个主要分支的平均茎龄为49-63亿a。根据形态、系统发育和分化时间的综合分析,该支系的物种由质(鲜)到硬(干)担子胞和强分枝的骨结合菌丝组成了支管属;巢居于favolus枝和neofavolus枝的种被分别视为favolus和neofavolus两个不同的属;将香菇门分支中具有中心、浅色柱头和膨大菌丝的多孢子虫种转移到香菇门中,将核心的多孢子虫分支作为大孢子虫。鳞片门分支中包含了多个不同属的物种,即Datronia、Datroniella、Echinochaete、mycoonia、Neodatronia、polyporus s. lat。和Pseudofavolus,但没有足够有效的形态学证据将所有物种合并在鳞状真菌真菌圈13(1):1 - 52 (2022)www.mycosphere.org ISSN 2077 7019
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引用次数: 18
Magnaporthiopsis species associated with patch diseases of turfgrasses in Australia 与澳大利亚草坪草斑块病相关的大孢子虫种
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2022-01-01 DOI: 10.5943/mycosphere/13/1/5
P. Wong, YP Tan, T. Weese, R. Shivas
Isolates of Magnaporthiopsis (Magnaporthaceae, Magnaporthales) were obtained from turfgrass species with patch disease symptoms in sports fields and golf courses in eastern Australia. Patch disease was characterised by plants with root rot, vascular discolouration and dark, ectotrophic mycelium on the root surfaces. Four new species, Magnaporthiopsis dharug , M. gadigal , M. gumbaynggirr and M. yugambeh , are described based on phylogenetic analysis of concatenated partial DNA sequences of the internal transcribed spacer (ITS) region, RNA polymerase II largest subunit ( RPB1 ) and translation elongation factor 1-alpha ( TEF1α ). The descriptions of the fungi include morphological characteristics and host associations. Magnaporthiopsis dharug was isolated from diseased roots of Cynodon dactylon (couch grass, Bermudagrass), Festuca rubra ssp. commutata (Chewing’s fescue) and Poa annua (winter grass); M. gadigal from diseased roots of Pennisetum clandestinum (kikuyu grass); M. gumbaynggirr from diseased roots of C. dactylon ; and M. yugambeh from diseased roots of P. annua . µm wide, forming mycelial strands and curling back at the Conidiophores hyaline, single or branched. Conidiogenous cells hyaline, phialidic, straight or curved, 5–20 x 2–4 µm, narrowed at the base and tapering at the apex. Conidia hyaline, ovoid or cylindrical, mostly straight or slightly curved, 6–10 (–12) x 3–4 µm, apex rounded, base acute, aseptate, hyaline, smooth. Ascomata not observed in culture or on infected material.
从澳大利亚东部运动场和高尔夫球场具有斑块病症状的草坪草种中分离得到了magnaporthopsis菌株(Magnaporthaceae, Magnaporthales)。斑块病的特征是根系腐烂,维管束变色,根表面菌丝体发黑。基于对其内部转录间隔区(ITS)、RNA聚合酶II最大亚基(RPB1)和翻译延伸因子1- α (TEF1α)的部分DNA序列的系统发育分析,描述了Magnaporthiopsis dharug、M. gadigal、M. gumbaynggirr和M. yugambeh 4个新种。真菌的描述包括形态特征和寄主关联。从阔叶草(Cynodon dactylon)、红羊茅(Festuca rubra ssp.)的病根中分离到一种药物。换向草(咀嚼羊茅)和冬草(冬草);锦尾草(Pennisetum clandestinum, kikuyu grass)的病根;青霉病根的M. gumbayngirr;黄花霉病根的黄花霉。µm宽,形成菌丝链并在分生孢子上卷曲,透明,单根或分枝。分生细胞透明,双亲状,直或弯,5-20 × 2-4µm,基部变窄,先端逐渐变细。分生孢子透明,卵球形或圆柱形,多数为直的或稍弯曲,6-10 (-12)× 3-4微米,先端圆形,基部锐尖,无裂,透明,光滑。在培养物或感染材料上未观察到Ascomata。
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引用次数: 2
Ten important forest fungal pathogens: a review on their emergence and biology 十种重要的森林真菌病原体:它们的出现和生物学研究进展
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2022-01-01 DOI: 10.5943/mycosphere/13/1/6
D. Gomdola, CS Bhunjun, K. Hyde, R. Jeewon, D. Pem, R. Jayawardena
Plant pathogenic fungi and fungus-like taxa (oomycetes) form part of the ecological makeup of healthy natural forest ecosystems. Some help to eliminate unhealthy trees, while others are essential for the conservation of plant species diversity, particularly soil-borne pathogens. However, many fungal pathogens also have devastating effects on forest ecosystems. Disease impacts are more profound when pathogens newly emerge and these can even wipe out an entire tree population. These organisms have developed a plethora of strategies to colonize and infect plants and there are several factors causing pathogens to emerge. Therefore, to prevent emerging diseases, a thorough understanding of the factors causing them is necessary. It is also important to have a comprehensive understanding of the mechanisms of disease development and propagation to design effective control measures. In this review, we describe the phenomenon of emerging and reemerging pathogens by exemplifying ten important recently emerged forest pathogenic fungi and fungus-like taxa, namely, Ophiostoma novo-ulmi, Ceratocystis fimbriata, Fusarium circinatum, Hymenoscyphus fraxineus, Phyllosticta citricarpa, Neonectria faginata, Sphaerulina musiva, Phytophthora pluvialis, P. agathidicida, and Melampsora × columbiana. They have been listed in order of the most cited to the least cited species based on data obtained from the Web of Science. We provide a review for each species to document its emergence and its negative impact on the host(s). We also revise their taxonomic placement, host and country details, and provide updated phylogenetic trees for each genus. The number of accepted species based on molecular data is also
植物病原真菌和类真菌分类群(卵菌)构成健康天然林生态系统的生态组成的一部分。有些有助于消除不健康的树木,而另一些则对保护植物物种多样性,特别是土壤传播的病原体至关重要。然而,许多真菌病原体也对森林生态系统产生破坏性影响。当病原体新出现时,疾病的影响更为深远,甚至可以消灭整个树木种群。这些生物已经发展出大量的策略来定植和感染植物,并且有几个因素导致病原体出现。因此,为了预防新出现的疾病,有必要彻底了解导致这些疾病的因素。全面了解疾病发生和传播的机制对设计有效的控制措施也很重要。本文以最近出现的10个重要的森林病原真菌和真菌样分类群为例,介绍了新发病原体和再发病原体的现象,即新发病原菌、毛鼻角孢菌、圆形镰刀菌、蜡膜菌、黄根瘤菌、faginata新菌、Sphaerulina musiva、雨疫霉、agathidicida和Melampsora x columbiana。根据从Web of Science获得的数据,它们按照被引用次数最多的物种到被引用次数最少的物种排列。我们对每个物种进行了回顾,以记录其出现及其对宿主的负面影响。我们还修改了它们的分类位置、寄主和国家细节,并为每个属提供了更新的系统发育树。基于分子数据的可接受物种的数量也是
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引用次数: 9
Trechisporales emended with a segregation of Sistotremastrales ord. nov. (Basidiomycota) 用Sistotremastrales ord.nov.(担子菌门)的分离改良的Trechisporales
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2022-01-01 DOI: 10.5943/mycosphere/13/1/11
Sl Liu, Shuang-Hui He, Xw Wang, T. May, G. He, Sl Chen, LW Zhou
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引用次数: 5
Diaporthe: formalizing the species-group concept 物种群概念的形式化
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2022-01-01 DOI: 10.5943/mycosphere/13/1/9
C. Norphanphoun, E. Gentekaki, S. Hongsanan, R. Jayawardena, I. Senanayake, I. Manawasinghe, PD Abeywickrama, CS Bhunjun, K. Hyde
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引用次数: 14
Outline of Fungi and fungus-like taxa – 2021 真菌和类真菌分类群大纲- 2021
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2022-01-01 DOI: 10.5943/mycosphere/13/1/2
Nn Wijayawardene, K. Hyde, DQ Dai, M. Sánchez-García, BT Goto, Rk Saxena, M. Erdoğdu, F. Selçuk, K. Rajeshkumar, A. Aptroot, J. Błaszkowski, N. Boonyuen, Gálber S. B. da Silva, FA de Souza, W. Dong, D. Ertz, D. Haelewaters, Ebg Jones, S. Karunarathna, P. Kirk, M. Kukwa, J. Kumla, DV Leontyev, H. Lumbsch, S.S.N. Maharachchikumbura, F. Marguno, P. Martínez-Rodríguez, A. Mešić, JS Monteiro, F. Oehl, J. Pawłowska, D. Pem, Wp Pfliegler, A. Phillips, A. Pošta, Mq He, Jx Li, M. Raza, OP Sruthi, S. Suetrong, N. Suwannarach, L. Tedersoo, V. Thiyagaraja, S. Tibpromma, Z. Tkalčec, YS Tokarev, Dn Wanasinghe, D. Wijesundara, Sdmk Wimalaseana, H. Madrid, Gq Zhang, Y. Gao, I. Sánchez-Castro, LZ Tang, M. Stadler, A. Yurkov, M. Thines
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引用次数: 136
Phylogenetic analysis demonstrating four new species in Megasporoporia sensu lato (Polyporales, Basidiomycota) 大孢子菌属4个新种的系统发育分析(多孢子目,担子菌科)
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2021-01-01 DOI: 10.5943/mycosphere/12/1/11
Y. Wang
Megasporoporia sensu lato is a common polypore genus in tropics, the members of which are readily recognized in the field because of their resupinate, light-coloured basidiocarps with big pores. The species of the genus usually grow on fresh fallen trunks and branches. The genus was recognized as polyphyletic by molecular analyses and divided into three genera: Megasporia, Megasporoporia sensu stricto and Megasporoporiella. In the present study, phylogenies based on the combined 2-gene (ITS + nLSU) and 4-gene (ITS + nLSU + mtSSU + TEF) sequences datasets of Megasporoporia sensu lato are analysed, and 21 lineages nested in three clades (the Megasporia clade, the Megasporoporia sensu stricto clade and the Megasporoporiella clade) are formed. Based on morphological examination, four new species, Megasporia bambusae, Megasporia fusiformis, Megasporoporia inflata and Megasporoporiella australiae, are described based on materials from Australia, China and Malaysia, and a new combination, Megasporoporiella hubeiensis comb. nov., is proposed. Megasporoporiella pseudocavernulosa is selected as the type species of Megasporoporiella because the previous type species Megasporoporiella cavernulosa was misidentified. Polyporus megasporoporus is the revised name for Megasporoporiella lacerata. In addition, a comparison of main characteristics and an identification key of Megasporoporia sensu lato are provided.
大孢子属(Megasporoporia sensu lato)是热带地区常见的多孢子属,其成员在野外很容易被识别,因为它们具有复生的、浅颜色的、气孔大的担子果。该属的物种通常生长在新鲜倒下的树干和树枝上。经分子分析,该属具有多系性,可分为大孢子虫属、大孢子虫属和大孢子虫属3属。本研究基于2基因(ITS + nLSU)和4基因(ITS + nLSU + mtSSU + TEF)组合序列数据集对大孢子虫的系统发育进行了分析,形成了3个分支(大孢子虫、狭义孢子虫和大孢子虫)的21个谱系。在形态学研究的基础上,根据澳大利亚、中国和马来西亚的资料,描述了竹大孢子虫(megasporporia bambusae)、fususiformis大孢子虫(megasporporia inflata)和澳大利亚大孢子虫(Megasporoporiella australiia) 4个新种和湖北大孢子虫梳状新组合。建议11月11日。由于之前的模式种海绵状巨孢孢子虫被误认,因此选择假海绵状巨孢孢子虫作为其模式种。大孢子虫是裂口大孢子虫的修订名称。此外,还对不同品种的主要性状进行了比较,并给出了鉴定关键字。
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引用次数: 7
Life in leaf litter: Fungal community succession during decomposition 凋落叶中的生命:分解过程中的真菌群落演替
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2021-01-01 DOI: 10.5943/mycosphere/12/1/5
D. Tennakoon
Leaf litter decomposition plays a vital role in the nutrient budget of forest ecosystems. Fungal communities colonising leaf litter are “key players” in decomposition and nutrient recycling, because of their ability to produce a wide range of extracellular enzymes that facilitate breakdown of leaf litter. Fungal colonization of decomposing leaf litter is a sequential process during which fungal communities tend to change both quantitatively and qualitatively. Most previous studies on fungal succession have taken synecological approaches, recording fungal species assemblages at different stages of decomposition in various plant species. This paper brings together various studies on leaf litter decomposition, fungal succession of leaf litter including study methods, succession stages, controlling factors, limitations and future perspectives. We discuss high throughput methods as emerging complementary approaches to better understand species diversity and community dynamics. We propose the importance of current approaches combining morphological and molecular data in fungal succession studies. Nevertheless, there are still opportunities for further breakthroughs in this area as few research groups have applied these techniques to fungal succession experiments.
凋落叶分解在森林生态系统的养分收支中起着至关重要的作用。寄生在凋落叶上的真菌群落是分解和养分循环的“关键参与者”,因为它们能够产生广泛的细胞外酶,促进凋落叶的分解。真菌在腐解凋落叶中的定殖是一个循序渐进的过程,在此过程中,真菌群落的数量和质量都会发生变化。以往对真菌演替的研究大多采用协同学方法,记录不同植物中不同分解阶段的真菌种类组合。本文综述了凋落叶分解、凋落叶真菌演替的各种研究,包括研究方法、演替阶段、控制因素、局限性和未来展望。我们讨论了高通量方法作为新兴的补充方法,以更好地了解物种多样性和群落动态。我们提出了结合形态学和分子数据在真菌演替研究中的重要性。然而,由于很少有研究小组将这些技术应用于真菌演替实验,因此在这一领域仍有进一步突破的机会。
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引用次数: 21
Morphomolecular taxonomic studies reveal a high number of endophytic fungi from Magnolia candolli and M. garrettii in China and Thailand 形态分子分类学研究表明,中国和泰国的白玉兰(Magnolia candolli)和白玉兰(M. garrettii)内生真菌数量众多
IF 14.6 1区 生物学 Q1 MYCOLOGY Pub Date : 2021-01-01 DOI: 10.5943/mycosphere/12/1/3
N. D. DE SILVA
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引用次数: 13
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Mycosphere
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