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The red flour beetle T. castaneum: elaborate genetic toolkit and unbiased large scale RNAi screening to study insect biology and evolution. 红粉甲虫:精细的遗传工具箱和无偏的大规模RNAi筛选研究昆虫生物学和进化。
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-07-19 DOI: 10.1186/s13227-022-00201-9
Martin Klingler, Gregor Bucher

The red flour beetle Tribolium castaneum has emerged as an important insect model system for a variety of topics. With respect to studying gene function, it is second only to the vinegar fly D. melanogaster. The RNAi response in T. castaneum is exceptionally strong and systemic, and it appears to target all cell types and processes. Uniquely for emerging model organisms, T. castaneum offers the opportunity of performing time- and cost-efficient large-scale RNAi screening, based on commercially available dsRNAs targeting all genes, which are simply injected into the body cavity. Well established transgenic and genome editing approaches are met by ease of husbandry and a relatively short generation time. Consequently, a number of transgenic tools like UAS/Gal4, Cre/Lox, imaging lines and enhancer trap lines are already available. T. castaneum has been a genetic experimental system for decades and now has become a workhorse for molecular and reverse genetics as well as in vivo imaging. Many aspects of development and general biology are more insect-typical in this beetle compared to D. melanogaster. Thus, studying beetle orthologs of well-described fly genes has allowed macro-evolutionary comparisons in developmental processes such as axis formation, body segmentation, and appendage, head and brain development. Transgenic approaches have opened new ways for in vivo imaging. Moreover, this emerging model system is the first choice for research on processes that are not represented in the fly, or are difficult to study there, e.g. extraembryonic tissues, cryptonephridial organs, stink gland function, or dsRNA-based pesticides.

红粉甲虫(Tribolium castaneum)已成为研究各种课题的重要昆虫模型系统。在基因功能的研究方面,仅次于黑腹蝇。castaneum中的RNAi反应异常强烈和全身性,它似乎针对所有细胞类型和过程。独特的新兴模式生物,T. castaneum提供了执行时间和成本效益的大规模RNAi筛选的机会,基于商业上可获得的针对所有基因的dsrna,只需将其注入体腔。建立良好的转基因和基因组编辑方法具有易于饲养和相对较短的世代时间的优点。因此,许多转基因工具,如UAS/Gal4, Cre/Lox,成像线和增强子陷阱线已经可用。castaneum作为一种遗传实验系统已经有几十年的历史,现在已经成为分子遗传学和逆向遗传学以及体内成像的主要研究对象。与黑腹瓢虫相比,这种甲虫的发育和一般生物学的许多方面更具有昆虫特征。因此,研究甲虫与苍蝇基因的同源性,可以在发育过程中进行宏观进化比较,如轴的形成、身体的分割、附属物、头部和大脑的发育。转基因技术为体内成像开辟了新的途径。此外,这个新兴的模型系统是研究苍蝇中没有代表或难以研究的过程的首选,例如胚胎外组织、隐肾器官、臭腺功能或基于dsrna的农药。
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引用次数: 12
Comparisons of cell proliferation and cell death from tornaria larva to juvenile worm in the hemichordate Schizocardium californicum 加利福尼亚裂心虫(Schizocardium californicum)半足虫幼虫与幼虫细胞增殖和细胞死亡的比较
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-06-06 DOI: 10.1186/s13227-022-00198-1
Bump, Paul, Khariton, Margarita, Stubbert, Clover, Moyen, Nicole E., Yan, Jia, Wang, Bo, Lowe, Christopher J.
There are a wide range of developmental strategies in animal phyla, but most insights into adult body plan formation come from direct-developing species. For indirect-developing species, there are distinct larval and adult body plans that are linked together by metamorphosis. Some outstanding questions in the development of indirect-developing organisms include the extent to which larval tissue undergoes cell death during the process of metamorphosis and when and where the tissue that will give rise to the adult originates. How do the processes of cell division and cell death redesign the body plans of indirect developers? In this study, we present patterns of cell proliferation and cell death during larval body plan development, metamorphosis, and adult body plan formation, in the hemichordate Schizocardium californium (Cameron and Perez in Zootaxa 3569:79–88, 2012) to answer these questions. We identified distinct patterns of cell proliferation between larval and adult body plan formation of S. californicum. We found that some adult tissues proliferate during the late larval phase prior to the start of overt metamorphosis. In addition, using an irradiation and transcriptomic approach, we describe a genetic signature of proliferative cells that is shared across the life history states, as well as markers that are unique to larval or juvenile states. Finally, we observed that cell death is minimal in larval stages but begins with the onset of metamorphosis. Cell proliferation during the development of S. californicum has distinct patterns in the formation of larval and adult body plans. However, cell death is very limited in larvae and begins during the onset of metamorphosis and into early juvenile development in specific domains. The populations of cells that proliferated and gave rise to the larvae and juveniles have a genetic signature that suggested a heterogeneous pool of proliferative progenitors, rather than a set-aside population of pluripotent cells. Taken together, we propose that the gradual morphological transformation of S. californicum is mirrored at the cellular level and may be more representative of the development strategies that characterize metamorphosis in many metazoan animals.
在动物门中有各种各样的发育策略,但大多数关于成体计划形成的见解来自直接发育的物种。对于间接发育的物种,有不同的幼虫和成虫的身体计划,它们通过变态联系在一起。在间接发育生物的发育过程中,一些悬而未决的问题包括幼虫组织在变形过程中经历细胞死亡的程度,以及成体组织产生的时间和地点。细胞分裂和细胞死亡的过程如何重新设计间接发育者的身体计划?在这项研究中,我们展示了半足虫Schizocardium californium (Cameron and Perez In Zootaxa 3569:79-88, 2012)在幼虫体面发育、蜕变和成虫体面形成过程中的细胞增殖和细胞死亡模式来回答这些问题。我们确定了不同的细胞增殖模式之间的幼虫和成虫体平面的形成。我们发现,一些成虫组织在幼虫后期增殖,在明显变态开始之前。此外,使用辐照和转录组学方法,我们描述了在生活史状态中共享的增殖细胞的遗传特征,以及幼虫或幼年状态特有的标记。最后,我们观察到细胞死亡在幼虫阶段是最小的,但开始与变态的开始。细胞增殖在美国californicum有着独特的发展模式形成的幼虫和成虫体内的计划。然而,细胞死亡在幼虫中是非常有限的,并开始于变态的开始和在特定领域的早期幼年发育。增殖并产生幼虫和幼体的细胞群体具有一个遗传特征,表明增殖祖细胞的异质性池,而不是一个多能细胞的单独群体。综上所述,我们建议美国californicum的渐进的形态变换是反映在细胞水平和可能更代表描述变形的发展战略在许多后生动物的动物。
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引用次数: 3
Distal-less and spalt are distal organisers of pierid wing patterns 无远端和裂端是远端组织者的梨形翼图案
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-06-03 DOI: 10.1186/s13227-022-00197-2
Jocelyn Liang Qi Wee, Tirtha Das Banerjee, Anupama Prakash, K. Seah, A. Monteiro
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引用次数: 3
Phloem wedges in Malpighiaceae: origin, structure, diversification, and systematic relevance 麻瓜科韧皮部楔:起源、结构、多样化及其系统相关性
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-04-28 DOI: 10.1186/s13227-022-00196-3
Quintanar-Castillo, Angélica, Pace, Marcelo R.
Phloem wedges furrowing the wood are one of the most notorious, widespread types of cambial variants in Angiosperms. Many lianas in Malpighiaceae show these variations in the arrangement of the secondary tissues. Here we explore their ontogeny, structure, and evolution in Malpighiaceae, where phloem wedges appeared multiple times, showing how they have contributed to the anatomical diversification of the family. Using a broad sampling with 143 species from 50 genera, covering all major lineages in Malpighiaceae, we crossed data from ontogeny, stem anatomy, and phylogenetic comparative methods to determine ontogenetic trajectories, final anatomical architectures, and evolution within the most recent phylogeny for the family. Phloem wedges appeared exclusively in lianas and disappeared in shrub lineages nested within liana lineages. At the onset of development, the vascular cambium is regular, producing secondary tissues homogeneously across its girth, but soon, portions of the cambium in between the leaf insertions switch their activity producing less wood and more phloem, initially generating phloem arcs, which progress into phloem wedges. In the formation of these wedges, two ontogenetic trajectories were found, one that maintains the continuity of the cambium, and another where the cambium gets dissected. Phloem wedges frequently remain as the main cambial variant in several lineages, while in others there are additional steps toward more complex cambial variants, such as fissured stems, or included phloem wedges, the latter a novel type of interxylary phloem first described for the family. Phloem wedges evolved exclusively in lianas, with two different ontogenies explaining the 10 independent origins of phloem wedges in Malpighiaceae. The presence of phloem wedges has favored the evolution of even more complex cambial variants such as fissured stems and interxylary phloem.
韧皮部楔形犁沟的木材是一个最臭名昭著的,广泛类型的形成层变异在被子植物。许多麻瓜科藤本植物在次生组织的排列上都表现出这种差异。在这里,我们探讨了它们在malpiighiaceae中的个体发生、结构和进化,其中韧皮部楔多次出现,展示了它们如何促进了该家族的解剖多样化。我们对来自50个属的143个物种进行了广泛的采样,涵盖了马尔匹吉科所有主要谱系,我们将个体发育、茎解剖和系统发育比较方法的数据进行了交叉,以确定该科的个体发育轨迹、最终解剖结构和最新系统发育中的进化。韧皮部楔形只在藤本植物中出现,而在藤本植物中嵌套的灌木系中消失。在发育初期,维管形成层是规则的,在其周长上均匀地产生次生组织,但很快,叶插间的部分形成层改变其活动,产生较少的木材和较多的韧皮部,最初产生韧皮部弧,然后发展成韧皮部楔。在这些楔形的形成过程中,发现了两条个体发生轨迹,一条是维持形成层的连续性,另一条是形成层被切开。在一些谱系中,韧皮部楔形经常作为主要的形成层变异,而在其他谱系中,有更多的步骤走向更复杂的形成层变异,如裂茎,或包括韧皮部楔形,后者是一种新的木质部间韧皮部,首次被描述为该家族。韧皮部楔只在藤本植物中进化,两种不同的个体发生解释了麻瓜科韧皮部楔的10个独立起源。韧皮部楔形的存在有利于更复杂的形成层变异的进化,如裂茎和韧皮部间。
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引用次数: 3
Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra 肉质或干质:转录组分析揭示了麻黄苞片发育的遗传机制
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-04-27 DOI: 10.1186/s13227-022-00195-4
Cecilia Zumajo-Cardona, B. Ambrose
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引用次数: 1
The diversity and evolution of electric organs in Neotropical knifefishes 新热带刀鱼电器官的多样性和进化
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-04-01 DOI: 10.1186/s13227-022-00194-5
Isabelle E. Bray, I. Alshami, T. Kudoh
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引用次数: 1
Fossils and plant evolution: structural fingerprints and modularity in the evo-devo paradigm 化石和植物进化:进化-发展范式中的结构指纹和模块化
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-03-02 DOI: 10.1186/s13227-022-00192-7
Tomescu, Alexandru M. F., Rothwell, Gar W.
Fossils constitute the principal repository of data that allow for independent tests of hypotheses of biological evolution derived from observations of the extant biota. Traditionally, transformational series of structure, consisting of sequences of fossils of the same lineage through time, have been employed to reconstruct and interpret morphological evolution. More recently, a move toward an updated paradigm was fueled by the deliberate integration of developmental thinking in the inclusion of fossils in reconstruction of morphological evolution. The vehicle for this is provided by structural fingerprints—recognizable morphological and anatomical structures generated by (and reflective of) the deployment of specific genes and regulatory pathways during development. Furthermore, because the regulation of plant development is both modular and hierarchical in nature, combining structural fingerprints recognized in the fossil record with our understanding of the developmental regulation of those structures produces a powerful tool for understanding plant evolution. This is particularly true when the systematic distribution of specific developmental regulatory mechanisms and modules is viewed within an evolutionary (paleo-evo-devo) framework. Here, we discuss several advances in understanding the processes and patterns of evolution, achieved by tracking structural fingerprints with their underlying regulatory modules across lineages, living and fossil: the role of polar auxin regulation in the cellular patterning of secondary xylem and the parallel evolution of arborescence in lycophytes and seed plants; the morphology and life history of early polysporangiophytes and tracheophytes; the role of modularity in the parallel evolution of leaves in euphyllophytes; leaf meristematic activity and the parallel evolution of venation patterns among euphyllophytes; mosaic deployment of regulatory modules and the diverse modes of secondary growth of euphyllophytes; modularity and hierarchy in developmental regulation and the evolution of equisetalean reproductive morphology. More generally, inclusion of plant fossils in the evo-devo paradigm has informed discussions on the evolution of growth patterns and growth responses, sporophyte body plans and their homology, sequences of character evolution, and the evolution of reproductive systems.
化石构成了主要的数据储存库,使我们能够独立检验从对现存生物群的观察中得出的生物进化假说。传统上,由同一谱系的化石序列组成的转换序列结构被用来重建和解释形态进化。最近,在形态进化重建中包含化石的刻意整合发展思维,推动了向更新范式的转变。结构指纹是一种可识别的形态和解剖结构,由发育过程中特定基因和调控途径的部署产生(并反映)。此外,由于植物的发育调控在本质上是模块化和分层的,将化石记录中识别的结构指纹与我们对这些结构的发育调控的理解结合起来,为理解植物进化提供了一个有力的工具。当在进化(古进化-发展)框架内观察特定发育调节机制和模块的系统分布时,这一点尤其正确。在这里,我们讨论了在理解进化过程和模式方面的几个进展,通过追踪结构指纹及其潜在的调节模块,跨越谱系,活的和化石:极性生长素调节在次生木质部的细胞模式中的作用,以及在石松植物和种子植物中乔木的平行进化;早期多孢子囊植物和管生植物的形态和生活史模块化在胡杨植物叶片平行进化中的作用幼嫩植物叶片分生组织活动与脉纹模式平行演化调控模块的镶嵌布局与幼嫩植物次生生长模式的多样性发育调节中的模块性和层次性与马类生殖形态的进化。更广泛地说,将植物化石纳入进化-发展范式已经为关于生长模式和生长反应的进化、孢子体形体计划及其同源性、性状进化序列和生殖系统进化的讨论提供了信息。
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引用次数: 6
Heterochrony and repurposing in the evolution of gymnosperm seed dispersal units. 裸子植物种子传播单位进化中的异时性和再利用。
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-02-16 DOI: 10.1186/s13227-022-00191-8
Juca A B San Martin, Raúl E Pozner, Verónica S Di Stilio

Background: Plant dispersal units, or diaspores, allow the colonization of new environments expanding geographic range and promoting gene flow. Two broad categories of diaspores found in seed plants are dry and fleshy, associated with abiotic and biotic dispersal agents, respectively. Anatomy and developmental genetics of fleshy angiosperm fruits is advanced in contrast to the knowledge gap for analogous fleshy structures in gymnosperm diaspores. Improved understanding of the structural basis of modified accessory organs that aid in seed dispersal will enable future work on the underlying genetics, contributing to hypotheses on the origin of angiosperm fruits. To generate a structural framework for the development and evolution of gymnosperm fleshy diaspores, we studied the anatomy and histochemistry of Ephedra (Gnetales) seed cone bracts, the modified leaves surrounding the reproductive organs. We took an ontogenetic approach, comparing and contrasting the anatomy and histology of fleshy and papery-winged seed cone bracts, and their respective pollen cone bracts and leaves in four species from the South American clade.

Results: Seed bract fleshiness in Ephedra derives from mucilage accumulated in chlorenchyma cells, also found in the reduced young leaves before they reach their mature, dry stage. Cellulosic fibers, an infrequent cell type in gymnosperms, were found in Ephedra, where they presumably function as a source of supplementary apoplastic water in fleshy seed cone bracts. Papery-winged bract development more closely resembles that of leaves, with chlorenchyma mucilage cells turning into tanniniferous cells early on, and hyaline margins further extending into "wings".

Conclusions: We propose an evolutionary developmental model whereby fleshy and papery-winged bracts develop from an early-stage anatomy shared with leaves that differs at the pollination stage. The ancestral fleshy bract state may represent a novel differentiation program built upon young leaf anatomy, while the derived dry, papery-winged state is likely built upon an existing differentiation pattern found in mature vegetative leaves. This model for the evolution of cone bract morphology in South American Ephedra hence involves a novel differentiation program repurposed from leaves combined with changes in the timing of leaf differentiation, or heterochrony, that can further be tested in other gymnosperms with fleshy diaspores.

背景:植物扩散单元,或称扩散孔,允许新环境的定植,扩大地理范围,促进基因流动。在种子植物中发现的两大类分散孔是干的和肉质的,分别与非生物和生物分散剂有关。肉质被子植物果实的解剖和发育遗传学的进展与裸子植物的类似肉质结构的知识差距形成对比。对有助于种子传播的修饰附属器官的结构基础的进一步了解,将有助于未来对潜在遗传学的研究,有助于对被子植物果实起源的假设。为了建立裸子植物肉质多囊体发育和进化的结构框架,我们研究了麻黄(gennetales)种子球果苞片的解剖和组织化学特征。采用个体发生学的方法,比较和对比了4种南美分支的肉质和纸翅种子球片、花粉球片和叶片的解剖和组织学。结果:麻黄种子苞片的肉质来自于绿组织细胞中积累的粘液,在成熟干燥期之前也存在于减少的幼叶中。纤维素纤维是裸子植物中少见的一种细胞类型,在麻黄中被发现,它们可能是肉质种子球果苞片中补充外胞体水的来源。纸翅苞片的发育更接近于叶片,绿色组织粘液细胞早期转变为单宁细胞,透明边缘进一步延伸为“翅膀”。结论:我们提出了一种进化发育模型,即肉质和纸翅的苞片从早期解剖结构发展而来,与授粉阶段不同的叶片共享。祖先的肉质苞片状态可能代表了一种建立在幼叶解剖结构上的新的分化程序,而衍生的干燥、纸翅状态可能建立在成熟营养叶中发现的现有分化模式上。因此,南美麻黄的圆锥苞片形态进化模型涉及一种新的分化程序,这种分化程序是由叶片与叶片分化时间(或异时性)的变化结合而成的,这可以进一步在其他具有肉质分裂的裸子植物中进行测试。
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引用次数: 1
Correction to: Delayed differentiation of epidermal cells walls can underlie pedomorphosis in plants: the case of pedomorphic petals in the hummingbird-pollinated Caiophora hibiscifolia (Loasaceae, subfam. Loasoideae) species. 更正:表皮细胞壁的延迟分化可能是植物中童形现象的基础:蜂鸟授粉的紫花槐(Loasaceae, subfam)中童形花瓣的情况。Loasoideae)物种。
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-02-15 DOI: 10.1186/s13227-022-00193-6
Marina M Strelin, Eduardo E Zattara, Kristian K Ullrich, Mareike Schallenberg-Rüdinger, Stefan A Rensing
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引用次数: 0
Duplication and expression patterns of CYCLOIDEA-like genes in Campanulaceae. 桔梗科CYCLOIDEA-like基因的复制及表达模式。
IF 4.1 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-02-06 DOI: 10.1186/s13227-021-00189-8
Jingjing Tong, Eric B Knox, Clifford W Morden, Nico Cellinese, Fatima Mossolem, Aarij S Zubair, Dianella G Howarth

Background: CYCLOIDEA (CYC)-like transcription factors pattern floral symmetry in most angiosperms. In core eudicots, two duplications led to three clades of CYC-like genes: CYC1, CYC2, and CYC3, with orthologs of the CYC2 clade restricting expression dorsally in bilaterally symmetrical flowers. Limited data from CYC3 suggest that they also play a role in flower symmetry in some asterids. We examine the evolution of these genes in Campanulaceae, a group that contains broad transitions between radial and bilateral floral symmetry and 180° resupination (turning upside-down by twisting pedicle).

Results: We identify here all three paralogous CYC-like clades across Campanulaceae. Similar to other core eudicots, we show that CamCYC2 duplicated near the time of the divergence of the bilaterally symmetrical and resupinate Lobelioideae. However, in non-resupinate, bilaterally symmetrical Cyphioideae, CamCYC2 appears to have been lost and CamCYC3 duplicated, suggesting a novel genetic basis for bilateral symmetry in Cyphioideae. We additionally, utilized qRT-PCR to examine the correlation between CYC-like gene expression and shifts in flower morphology in four species of Lobelioideae. As expected, CamCYC2 gene expression was dorsoventrally restricted in bilateral symmetrical flowers. However, because Lobelioideae have resupinate flowers, both CamCYC2A and CamCYC2B are highly expressed in the finally positioned ventral petal lobes, corresponding to the adaxial side of the flower relative to meristem orientation.

Conclusions: Our sequences across Campanulaceae of all three of these paralogous groups suggests that radially symmetrical Campanuloideae duplicated CYC1, Lobelioideae duplicated CYC2 and lost CYC3 early in their divergence, and that Cyphioideae lost CYC2 and duplicated CYC3. This suggests a dynamic pattern of duplication and loss of major floral patterning genes in this group and highlights the first case of a loss of CYC2 in a bilaterally symmetrical group. We illustrate here that CYC expression is conserved along the dorsoventral axis of the flower even as it turns upside-down, suggesting that at least late CYC expression is not regulated by extrinsic factors such as gravity. We additionally show that while the pattern of dorsoventral expression of each paralog remains the same, CamCYC2A is more dominant in species with shorter relative finally positioned dorsal lobes, and CamCYC2B is more dominant in species with long dorsal lobes.

背景:在大多数被子植物中,CYCLOIDEA (CYC)样转录因子决定了花的对称性。在核心株中,两次重复导致cyc样基因的三个分支:CYC1、CYC2和CYC3, CYC2分支的同源物在两侧对称花的背面限制表达。来自CYC3的有限数据表明,它们也在一些小行星的花朵对称中发挥作用。我们研究了这些基因在铃兰科的进化,这是一个包含径向和双边花对称和180°再旋(通过扭转花蒂翻转)之间广泛转变的群体。结果:我们在此鉴定了所有三个类似cyc的伞形科分支。与其他核心分支相似,我们发现CamCYC2在两侧对称和复生的小叶纲分化的时间附近复制。然而,在非重叠的,两侧对称的cyhioideae中,CamCYC2似乎丢失了,CamCYC3重复了,这表明cyhioideae的双侧对称有一个新的遗传基础。此外,我们还利用qRT-PCR技术检测了四种半叶植物中cyc样基因表达与花形态变化的相关性。正如预期的那样,CamCYC2基因的表达在双侧对称花中受到背侧限制。然而,由于小叶植物有复生花,CamCYC2A和CamCYC2B都在最终定位的腹侧花瓣裂片中高度表达,相对于分生组织取向,CamCYC2A和CamCYC2B都在花的正面。结论:我们对三种相似类群的测序结果表明,钟科在分化早期具有径向对称的CYC1复制,小叶科在分化早期具有CYC2复制和CYC3丢失,而钟科在分化早期具有CYC2复制和CYC3丢失。这表明,在这一群体中,主要花形基因的复制和丢失是一种动态模式,并突出了CYC2在双侧对称群体中丢失的第一例。我们在这里说明,CYC的表达沿着花的背腹轴是保守的,即使它倒过来,这表明至少晚期CYC的表达不受重力等外在因素的调节。我们还发现,虽然各平行基因的背腹侧表达模式保持不变,但CamCYC2A在相对最终位置背叶较短的物种中更占优势,而CamCYC2B在背叶较长的物种中更占优势。
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引用次数: 2
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