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Toolkit for mapping the clonal landscape of tumor-infiltrating B cells 绘制肿瘤浸润 B 细胞克隆图谱的工具包
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-01-31 DOI: 10.1016/j.smim.2024.101864
E.O. Serebrovskaya , E.A. Bryushkova , D.K. Lukyanov , N.V. Mushenkova , D.M. Chudakov , M.A. Turchaninova

Our current understanding of whether B cell involvement in the tumor microenvironment benefits the patient or the tumor - in distinct cancers, subcohorts and individual patients - is quite limited. Both statements are probably true in most cases: certain clonal B cell populations contribute to the antitumor response, while others steer the immune response away from the desired mechanics. To step up to a new level of understanding and managing B cell behaviors in the tumor microenvironment, we need to rationally discern these roles, which are cumulatively defined by B cell clonal functional programs, specificities of their B cell receptors, specificities and isotypes of the antibodies they produce, and their spatial interactions within the tumor environment. Comprehensive analysis of these characteristics of clonal B cell populations is now becoming feasible with the development of a whole arsenal of advanced technical approaches, which include (1) methods of single-cell and spatial transcriptomics, genomics, and proteomics; (2) methods of massive identification of B cell specificities; (3) methods of deep error-free profiling of B cell receptor repertoires. Here we overview existing techniques, summarize their current application for B cells studies and propose promising future directions in advancing B cells exploration.

目前,我们对 B 细胞参与肿瘤微环境是对患者有益还是对肿瘤有益--在不同的癌症、亚群和单个患者中--的认识非常有限。在大多数情况下,这两种说法都可能是对的:某些克隆 B 细胞群有助于抗肿瘤反应,而另一些则会引导免疫反应偏离所需的机制。为了将对肿瘤微环境中 B 细胞行为的理解和管理提升到一个新的水平,我们需要理性地辨别这些角色,它们是由 B 细胞克隆功能程序、B 细胞受体的特异性、它们产生的抗体的特异性和同种型以及它们在肿瘤环境中的空间相互作用共同决定的。随着一整套先进技术方法的发展,对克隆 B 细胞群的这些特征进行全面分析已变得可行,这些方法包括:(1)单细胞和空间转录组学、基因组学和蛋白质组学方法;(2)大规模鉴定 B 细胞特异性的方法;(3)对 B 细胞受体谱系进行深度无差错分析的方法。在此,我们概述了现有的技术,总结了这些技术目前在 B 细胞研究中的应用,并提出了推进 B 细胞研究的未来发展方向。
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引用次数: 0
Type I and type III interferons: From basic biology and genetics to clinical development for COVID-19 and beyond I型和III型干扰素:从基础生物学和遗传学到 COVID-19 及其后的临床开发
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-01-24 DOI: 10.1016/j.smim.2024.101863
Evangelos Andreakos, COVID Human Genetic Effort

Type I and type III interferons (IFNs) constitute a key antiviral defense systems of the body, inducing viral resistance to cells and mediating diverse innate and adaptive immune functions. Defective type I and type III IFN responses have recently emerged as the 'Achilles heel' in COVID-19, with such patients developing severe disease and exhibiting a high risk for critical pneumonia and death. Here, we review the biology of type I and type III IFNs, their similarities and important functional differences, and their roles in SARS-CoV-2 infection. We also appraise the various mechanisms proposed to drive defective IFN responses in COVID-19 with particular emphasis to the ability of SARS-CoV-2 to suppress IFN production and activities, the genetic factors involved and the presence of autoantibodies neutralizing IFNs and accounting for a large proportion of individuals with severe COVID-19. Finally, we discuss the long history of the type I IFN therapeutics for the treatment of viral diseases, cancer and multiple sclerosis, the various efforts to use them in respiratory infections, and the newly emerging type III IFN therapeutics, with emphasis to the more recent studies on COVID-19 and their potential use as broad spectrum antivirals for future epidemics or pandemics.

Ⅰ型和Ⅲ型干扰素(IFN)是机体的关键抗病毒防御系统,可诱导细胞产生抗病毒能力,并介导多种先天性和适应性免疫功能。I 型和 III 型 IFN 反应缺陷最近已成为 COVID-19 的 "阿喀琉斯之踵",这类患者会发展成重症,并表现出重症肺炎和死亡的高风险。在此,我们回顾了 I 型和 III 型 IFN 的生物学特性、它们的相似之处和重要的功能差异,以及它们在 SARS-CoV-2 感染中的作用。我们还评估了导致 COVID-19 中 IFN 反应缺陷的各种机制,特别强调了 SARS-CoV-2 抑制 IFN 生成和活性的能力、相关遗传因素以及中和 IFN 的自身抗体的存在,这些抗体在严重 COVID-19 患者中占很大比例。最后,我们讨论了 I 型 IFN 疗法治疗病毒性疾病、癌症和多发性硬化症的悠久历史,将其用于呼吸道感染的各种努力,以及新出现的 III 型 IFN 疗法,重点是最近对 COVID-19 的研究及其作为广谱抗病毒药物用于未来流行病或大流行的潜力。
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引用次数: 0
To die or not to die: Gasdermins in intestinal health and disease 死还是不死肠道健康和疾病中的气敏物质
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-01-16 DOI: 10.1016/j.smim.2024.101865
Zhaoyu Lin , Qianyue Chen , Hai-Bin Ruan

Intestinal homeostasis is achieved by the balance among intestinal epithelium, immune cells, and gut microbiota. Gasdermins (GSDMs), a family of membrane pore forming proteins, can trigger rapid inflammatory cell death in the gut, mainly pyroptosis and NETosis. Importantly, there is increasing literature on the non-cell lytic roles of GSDMs in intestinal homeostasis and disease. While GSDMA is low and PJVK is not expressed in the gut, high GSDMB and GSDMC expression is found almost restrictively in intestinal epithelial cells. Conversely, GSDMD and GSDME show more ubiquitous expression among various cell types in the gut. The N-terminal region of GSDMs can be liberated for pore formation by an array of proteases in response to pathogen- and danger-associated signals, but it is not fully understood what cell type-specific mechanisms activate intestinal GSDMs. The host relies on GSDMs for pathogen defense, tissue tolerance, and cancerous cell death; however, pro-inflammatory milieu caused by pyroptosis and excessive cytokine release may favor the development and progression of inflammatory bowel disease and cancer. Therefore, a thorough understanding of spatiotemporal mechanisms that control gasdermin expression, activation, and function is essential for the development of future therapeutics for intestinal disorders.

肠道平衡是通过肠道上皮细胞、免疫细胞和肠道微生物群之间的平衡来实现的。Gasdermins(GSDMs)是膜孔形成蛋白的一个家族,可引发肠道内炎症细胞的快速死亡,主要是热凋亡和NETosis。重要的是,关于 GSDMs 在肠道平衡和疾病中的非细胞溶解作用的文献越来越多。GSDMA 在肠道中表达量较低,PJVK 在肠道中也不表达,而 GSDMB 和 GSDMC 在肠道上皮细胞中几乎限制性地高表达。相反,GSDMD 和 GSDME 在肠道各种细胞类型中的表达更为普遍。GSDMs 的 N 端区域可被一系列蛋白酶释放出来形成孔隙,以响应病原体和危险相关信号,但目前还不完全清楚是什么细胞类型特异性机制激活了肠道 GSDMs。宿主依赖 GSDMs 进行病原体防御、组织耐受性和癌细胞死亡;然而,热蛋白沉积和细胞因子过度释放导致的促炎环境可能有利于炎症性肠病和癌症的发生和发展。因此,透彻了解控制 gasdermin 表达、激活和功能的时空机制对于开发未来治疗肠道疾病的药物至关重要。
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引用次数: 0
Gut-liver axis: Pathophysiological concepts and medical perspective in chronic liver diseases 肠肝轴:慢性肝病的病理生理学概念和医学视角
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-01-13 DOI: 10.1016/j.smim.2023.101859
Susana G. Rodrigues , Schalk van der Merwe , Aleksander Krag , Reiner Wiest
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引用次数: 0
Antigen cross-presentation by dendritic cells: A critical axis in cancer immunotherapy 树突状细胞的抗原交叉呈递:癌症免疫治疗的关键轴
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2023-11-29 DOI: 10.1016/j.smim.2023.101848
Christine Moussion, Lélia Delamarre

Dendritic cells (DCs) are professional antigen-presenting cells that play a key role in shaping adaptive immunity. DCs have a unique ability to sample their environment, capture and process exogenous antigens into peptides that are then loaded onto major histocompatibility complex class I molecules for presentation to CD8+ T cells. This process, called cross-presentation, is essential for initiating and regulating CD8+ T cell responses against tumors and intracellular pathogens. In this review, we will discuss the role of DCs in cancer immunity, the molecular mechanisms underlying antigen cross-presentation by DCs, the immunosuppressive factors that limit the efficiency of this process in cancer, and approaches to overcome DC dysfunction and therapeutically promote antitumoral immunity.

树突状细胞是一种专业的抗原呈递细胞,在形成适应性免疫中起着关键作用。树突状细胞具有独特的能力,可以对其环境进行采样,捕获外源抗原并将其加工成肽,然后将其装载到主要的组织相容性复合体I类分子上,呈递给CD8+ T细胞。这一过程被称为交叉呈递,对于启动和调节CD8+ T细胞对肿瘤和细胞内病原体的反应至关重要。在这篇综述中,我们将讨论DC在癌症免疫中的作用,DC抗原交叉递呈的分子机制,限制这一过程在癌症中效率的免疫抑制因素,以及克服DC功能障碍和从治疗上促进抗肿瘤免疫的方法。
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引用次数: 0
Regulated cell death in neutrophils: From apoptosis to NETosis and pyroptosis 中性粒细胞的调节性细胞死亡:从细胞凋亡到NETosis和Pyroposis。
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2023-11-01 DOI: 10.1016/j.smim.2023.101849
Léonie Dejas , Karin Santoni , Etienne Meunier , Mohamed Lamkanfi

Neutrophils are among the most abundant immune cells, representing about 50%− 70% of all circulating leukocytes in humans. Neutrophils rapidly infiltrate inflamed tissues and play an essential role in host defense against infections. They exert microbicidal activity through a variety of specialized effector mechanisms, including phagocytosis, production of reactive oxygen species, degranulation and release of secretory vesicles containing broad-spectrum antimicrobial factors. In addition to their homeostatic turnover by apoptosis, recent studies have revealed the mechanisms by which neutrophils undergo various forms of regulated cell death. In this review, we will discuss the different modes of regulated cell death that have been described in neutrophils, with a particular emphasis on the current understanding of neutrophil pyroptosis and its role in infections and autoinflammation.

中性粒细胞是最丰富的免疫细胞之一,约占人类所有循环白细胞的50%-70%。中性粒细胞迅速浸润发炎组织,在宿主防御感染中发挥重要作用。它们通过多种特殊的效应机制发挥杀微生物活性,包括吞噬作用、活性氧的产生、脱颗粒和释放含有广谱抗菌因子的分泌囊泡。除了通过细胞凋亡进行稳态转换外,最近的研究还揭示了中性粒细胞经历各种形式的调节细胞死亡的机制。在这篇综述中,我们将讨论中性粒细胞中所描述的不同调节细胞死亡模式,特别强调目前对中性粒细胞焦下垂及其在感染和自身炎症中的作用的理解。
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引用次数: 0
Introduction to the special issue: Antigen cross-presentation 特刊简介:抗原交叉展示。
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2023-11-01 DOI: 10.1016/j.smim.2023.101850
Peter van Endert
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引用次数: 0
Regulatory T cells in allergic inflammation 过敏性炎症中的调节性T细胞。
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2023-10-12 DOI: 10.1016/j.smim.2023.101847
Mehdi Benamar , Qian Chen , Monica Martinez-Blanco , Talal A. Chatila

Regulatory T (Treg) cells maintain immune tolerance to allergens at the environmental interfaces in the airways, skin and gut, marshalling in the process distinct immune regulatory circuits operative in the respective tissues. Treg cells are coordinately mobilized with allergic effector mechanisms in the context of a tissue-protective allergic inflammatory response against parasites, toxins and potentially harmful allergens, serving to both limit the inflammation and promote local tissue repair. Allergic diseases are associated with subverted Treg cell responses whereby a chronic allergic inflammatory environment can skew Treg cells toward pathogenic phenotypes that both perpetuate and aggravate disease. Interruption of Treg cell subversion in chronic allergic inflammatory conditions may thus provide novel therapeutic strategies by re-establishing effective immune regulation.

调节性T(Treg)细胞在气道、皮肤和肠道的环境界面维持对过敏原的免疫耐受,在这个过程中,在各个组织中形成不同的免疫调节回路。在针对寄生虫、毒素和潜在有害过敏原的组织保护性过敏性炎症反应的背景下,Treg细胞与过敏效应机制协同动员,起到限制炎症和促进局部组织修复的作用。过敏性疾病与Treg细胞反应被破坏有关,由此慢性过敏性炎症环境可以使Treg细胞向致病表型倾斜,从而使疾病永久化和加重。因此,在慢性过敏性炎症条件下阻断Treg细胞颠覆可能通过重新建立有效的免疫调节提供新的治疗策略。
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引用次数: 0
Chemical modulation of gasdermin D activity: Therapeutic implications and consequences gasdermin D活性的化学调节:治疗意义和后果。
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2023-10-08 DOI: 10.1016/j.smim.2023.101845
Bowen Zhou, Derek W. Abbott

The gasdermin family of proteins are central effectors of the inflammatory, lytic cell death modality known as pyroptosis. Characterized in 2015, the most well-studied member gasdermin D can be proteolyzed, typically by caspases, to generate an active pore-forming N-terminal domain. At least well-studied three pharmacological inhibitors (necrosulfonamide, disulfiram, dimethyl fumarate) since 2018 have been shown to affect gasdermin D activity either through modulation of processing or interference with pore formation. A multitude of murine in vivo studies have since followed. Here, we discuss the current state of research surrounding these three inhibitors, caveats to their use, and a set of guiding principles that researchers should consider when pursuing further studies of gasdermin D inhibition.

gasdermin蛋白家族是炎症性、裂解性细胞死亡模式(pyroptosis)的中心效应物。2015年,研究最深入的成员gasdermin D可以进行蛋白水解,通常通过半胱天冬酶进行,以产生活性的成孔N-末端结构域。自2018年以来,至少有三种经过充分研究的药理学抑制剂(坏死磺酰胺、二硫仑、富马酸二甲酯)已被证明通过调节加工或干扰孔隙形成来影响gasdermin D的活性。此后进行了大量的小鼠体内研究。在这里,我们讨论了围绕这三种抑制剂的研究现状,它们的使用注意事项,以及研究人员在进一步研究gasdermin D抑制作用时应考虑的一套指导原则。
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引用次数: 0
The epithelial barrier: The gateway to allergic, autoimmune, and metabolic diseases and chronic neuropsychiatric conditions 上皮屏障:过敏性、自身免疫性、代谢性疾病和慢性神经精神疾病的途径。
IF 7.8 2区 医学 Q1 IMMUNOLOGY Pub Date : 2023-10-04 DOI: 10.1016/j.smim.2023.101846
Duygu Yazici , Ismail Ogulur , Yagiz Pat , Huseyn Babayev , Elena Barletta , Sena Ardicli , Manal Bel imam , Mengting Huang , Jana Koch , Manru Li , Debbie Maurer , Urszula Radzikowska , Pattraporn Satitsuksanoa , Stephan R. Schneider , Na Sun , Stephan Traidl , Alexandra Wallimann , Sebastian Wawrocki , Damir Zhakparov , Danielle Fehr , Cezmi A. Akdis

Since the 1960 s, our health has been compromised by exposure to over 350,000 newly introduced toxic substances, contributing to the current pandemic in allergic, autoimmune and metabolic diseases. The "Epithelial Barrier Theory" postulates that these diseases are exacerbated by persistent periepithelial inflammation (epithelitis) triggered by exposure to a wide range of epithelial barrier-damaging substances as well as genetic susceptibility. The epithelial barrier serves as the body's primary physical, chemical, and immunological barrier against external stimuli. A leaky epithelial barrier facilitates the translocation of the microbiome from the surface of the afflicted tissues to interepithelial and even deeper subepithelial locations. In turn, opportunistic bacterial colonization, microbiota dysbiosis, local inflammation and impaired tissue regeneration and remodelling follow. Migration of inflammatory cells to susceptible tissues contributes to damage and inflammation, initiating and aggravating many chronic inflammatory diseases. The objective of this review is to highlight and evaluate recent studies on epithelial physiology and its role in the pathogenesis of chronic diseases in light of the epithelial barrier theory.

自20世纪60年代以来,我们的健康因接触超过350000种新引入的有毒物质而受到损害,这导致了当前过敏性、自身免疫性和代谢性疾病的流行。“上皮屏障理论”假设,这些疾病会因暴露于多种上皮屏障损伤物质以及遗传易感性而引发的持续性上皮周炎症(上皮炎)而加剧。上皮屏障是人体抵抗外部刺激的主要物理、化学和免疫屏障。渗漏的上皮屏障有助于微生物组从受损组织表面转移到上皮间甚至更深的上皮下位置。反过来,机会性细菌定植、微生物群失调、局部炎症以及受损的组织再生和重塑随之而来。炎症细胞迁移到易感组织会导致损伤和炎症,引发并加重许多慢性炎症疾病。本综述的目的是根据上皮屏障理论,强调和评价上皮生理学及其在慢性病发病机制中的作用的最新研究。
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引用次数: 0
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Seminars in Immunology
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