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Auto-segmentation of thoraco-abdominal organs in pediatric dynamic MRI 小儿动态磁共振成像中胸腹器官的自动分区
Pub Date : 2024-05-06 DOI: 10.1101/2024.05.04.24306582
Yusuf Akhtar, Jayaram K. Udupa, Yubing Tong, Tiange Liu, Caiyun Wu, Rachel Kogan, Mostafa Al-noury, Mahdie Hosseini, Leihui Tong, Samarth Mannikeri, Dewey Odhner, Joseph M. Mcdonough, Carina Lott, Abigail Clark, Patrick J. Cahill, Jason B. Anari, Drew A. Torigian
Purpose Analysis of the abnormal motion of thoraco-abdominal organs in respiratory disorders such as the Thoracic Insufficiency Syndrome (TIS) and scoliosis such as adolescent idiopathic scoliosis (AIS) or early onset scoliosis (EOS) can lead to better surgical plans. We can use healthy subjects to find out the normal architecture and motion of a rib cage and associated organs and attempt to modify the patient’s deformed anatomy to match to it. Dynamic magnetic resonance imaging (dMRI) is a practical and preferred imaging modality for capturing dynamic images of healthy pediatric subjects. In this paper, we propose an auto-segmentation set-up for the lungs, kidneys, liver, spleen, and thoraco-abdominal skin in these dMRI images which have their own challenges such as poor contrast, image non-standardness, and similarity in texture amongst gas, bone, and connective tissue at several inter-object interfaces.
目的 分析胸廓发育不全综合症(TIS)等呼吸系统疾病和青少年特发性脊柱侧弯症(AIS)或早发性脊柱侧弯症(EOS)等脊柱侧弯症中胸腹器官的异常运动,可以制定更好的手术方案。我们可以利用健康受试者找出肋骨笼和相关器官的正常结构和运动,并尝试修改患者的畸形解剖结构,使之与之相匹配。动态磁共振成像(dMRI)是捕捉健康儿科受试者动态图像的一种实用且首选的成像模式。在本文中,我们提出了在这些 dMRI 图像中对肺、肾、肝、脾和胸腹部皮肤进行自动分割的设置,这些图像有其自身的挑战,如对比度差、图像不标准,以及在几个物体间界面的气体、骨骼和结缔组织之间的纹理相似性。
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引用次数: 0
Impact of Non-Contrast Enhanced Imaging Input Sequences on the Generation of Virtual Contrast-Enhanced Breast MRI Scans using Neural Networks 非对比度增强成像输入序列对利用神经网络生成虚拟对比度增强乳腺 MRI 扫描的影响
Pub Date : 2024-05-06 DOI: 10.1101/2024.05.03.24306067
Andrzej Liebert, Hannes Schreiter, Lorenz A Kapsner, Jessica Eberle, Chris Ehring, Dominique Hadler, Luise Brock, Ramona Erber, Julius Emons, Frederik B. Laun, Michael Uder, Evelyn Wenkel, Sabine Ohlmeyer, Sebastian Bickelhaupt
Background Virtual contrast-enhanced (vCE) imaging techniques are an emerging topic of research in breast MRI.
背景 虚拟对比度增强(vCE)成像技术是乳腺磁共振成像的一个新兴研究课题。
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引用次数: 0
Investigation of the differential biology between benign and malignant renal masses using advanced magnetic resonance imaging techniques (IBM-Renal): a multi-arm, non-randomised feasibility study 利用先进的磁共振成像技术(IBM-Renal)研究良性和恶性肾肿块之间的生物学差异:一项多臂、非随机可行性研究
Pub Date : 2024-05-05 DOI: 10.1101/2024.05.03.24306816
Ines Horvat-Menih, Mary McLean, Maria Jesus Zamora-Morales, Marta Wylot, Joshua Kaggie, Alixander S Khan, Andrew B Gill, Joao Duarte, Matthew J Locke, Iosif A Mendichovszky, Hao Li, Andrew N Priest, Anne Y Warren, Sarah J Welsh, James O Jones, James N Armitage, Thomas J Mitchell, Grant D Stewart, Ferdia A Gallagher
Introduction Localised renal masses are an increasing burden on healthcare due to the rising number of cases. However, conventional imaging cannot reliably distinguish between benign and malignant renal masses, and renal mass biopsies are unable to characterise the entirety of the tumour due to sampling error, which may lead to delayed treatment or overtreatment. There is an unmet clinical need to develop novel imaging techniques to characterise renal masses more accurately. Renal tumours demonstrate characteristic metabolic reprogramming, and novel MRI methods have the potential to detect these metabolic perturbations which may therefore aid accurate characterisation. Here we present our study protocol for the Investigation of the differential biology of Benign and Malignant renal masses using advanced magnetic resonance imaging techniques (IBM-Renal).
导言:由于病例数量不断增加,局部肾肿块日益成为医疗负担。然而,传统的成像技术无法可靠地区分良性和恶性肾肿块,肾肿块活检由于取样误差而无法确定肿瘤的整体特征,这可能导致治疗延误或过度治疗。开发新的成像技术以更准确地描述肾肿块的特征是一项尚未得到满足的临床需求。肾脏肿瘤表现出特征性的代谢重编程,新型磁共振成像方法有可能检测到这些代谢扰动,从而有助于准确定性。在此,我们介绍利用先进的磁共振成像技术(IBM-Renal)调查良性和恶性肾肿块的差异生物学的研究方案。
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引用次数: 0
Assessment of 3D hemi-diaphragmatic motion via free-breathing dynamic MRI in pediatric thoracic insufficiency syndrome 通过自由呼吸动态磁共振成像评估小儿胸廓发育不全综合征的三维半膈运动
Pub Date : 2024-05-03 DOI: 10.1101/2024.05.02.24306551
Mahdie Hosseini, Jayaram K. Udupa, You Hao, Yubing Tong, Caiyun Wu, Yusuf Akhtar, Mostafa Al-Noury, Shiva Shaghaghi, Joseph M. McDonough, David M. Biko, Samantha Gogel, Oscar H. Mayer, Patrick J. Cahill, Drew A. Torigian, Jason B. Anari
Purpose Thoracic insufficiency syndrome (TIS) affects ventilatory function due to spinal and thoracic deformities limiting lung space and diaphragmatic motion. Corrective orthopedic surgery can be used to help normalize skeletal anatomy, restoring lung space and diaphragmatic motion. This study employs free-breathing dynamic MRI (dMRI) and quantifies the 3D motion of each hemi-diaphragm surface in normal and TIS patients, and evaluates effects of surgical intervention.
目的 胸廓发育不全综合征(TIS)会影响通气功能,原因是脊柱和胸廓畸形限制了肺部空间和膈肌运动。矫正矫形手术可帮助骨骼解剖恢复正常,恢复肺部空间和膈肌运动。本研究采用自由呼吸动态核磁共振成像(dMRI),量化正常和 TIS 患者每个半膈表面的三维运动,并评估手术干预的效果。
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引用次数: 0
Prompt Engineering Strategies Improve the Diagnostic Accuracy of GPT-4 Turbo in Neuroradiology Cases 及时的工程策略提高了神经放射学病例中 GPT-4 Turbo 的诊断准确性
Pub Date : 2024-05-01 DOI: 10.1101/2024.04.29.24306583
Akihiko Wada, Toshiaki Akashi, George Shih, Akifumi Hagiwara, Mitsuo Nishizawa, Yayoi Hayakawa, Junko Kikuta, Keigo Shimoji, Katsuhiro Sano, Koji Kamagata, Atsushi Nakanishi, Shigeki Aoki
Background Large language models (LLMs) like GPT-4 demonstrate promising capabilities in medical image analysis, but their practical utility is hindered by substantial misdiagnosis rates ranging from 30-50%.
背景 GPT-4 等大型语言模型(LLMs)在医学图像分析中表现出了良好的能力,但 30-50% 的高误诊率阻碍了它们的实际应用。
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引用次数: 0
Altered Brain Glucose Metabolism in COVID-19 disease: An activation likelihood estimation Meta-analysis COVID-19 疾病的脑葡萄糖代谢改变:激活似然估计元分析
Pub Date : 2024-05-01 DOI: 10.1101/2024.04.30.24306508
Dongju Kang, Hyunji Jung, Kyoungjune Pak
Purpose COVID-19, caused by the SARS-CoV-2 virus, has significantly altered modern society and lifestyles. We investigated its impact on brain glucose metabolism by meta-analyzing existing studies that utilized 18F-fluorodeoxyglucose (FDG) positron emission tomography (PET) scans of the brain.
目的 由 SARS-CoV-2 病毒引起的 COVID-19 严重改变了现代社会和生活方式。我们通过对利用 18F-氟脱氧葡萄糖(FDG)正电子发射断层扫描(PET)扫描大脑的现有研究进行荟萃分析,研究了它对大脑葡萄糖代谢的影响。
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引用次数: 0
Harmonizing multisite neonatal diffusion-weighted brain MRI data for developmental neuroscience 为发育神经科学协调多站点新生儿弥散加权脑磁共振成像数据
Pub Date : 2024-05-01 DOI: 10.1101/2024.04.30.24306619
Alexandra F. Bonthrone, Manuel Blesa Cábez, A. David Edwards, Jo V. Hajnal, Serena J. Counsell, James P. Boardman
Large diffusion-weighted brain MRI (dMRI) studies in neonates are crucial for developmental neuroscience. Our aim was to investigate the utility of ComBat, and empirical Bayes tool for multisite harmonization, for removing site effects from white matter (WM) dMRI measures in healthy infants born 37-42+6 weeks from the Theirworld Edinburgh Birth Cohort (n=86) and Developing Human Connectome Project (n=287).
对新生儿进行大型弥散加权脑磁共振成像(dMRI)研究对发育神经科学至关重要。我们的目的是研究 ComBat 和经验贝叶斯工具在多部位协调中的实用性,以消除白质(WM)dMRI 测量中的部位效应,研究对象是出生 37-42+6 周的健康婴儿,来自他们的世界爱丁堡出生队列(n=86)和发展中人类连接组项目(n=287)。
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引用次数: 0
Lowering The Acoustic Noise Burden in MRI with Predictive Noise Canceling 利用预测性降噪降低核磁共振成像中的声学噪声负担
Pub Date : 2024-04-30 DOI: 10.1101/2024.04.28.24305337
Paulina Šiurytė, Sebastian Weingärtner
Even though Magnetic Resonance Imaging (MRI) exams are performed up to 16 times per every 100 inhabitants each year, patient comfort and acceptance rates are strongly compromised by exposure to loud acoustic noise. Here we present a system for acoustic noise cancellation using anti-noise derived from predicted scanner sounds. In this approach, termed predictive noise canceling (PNC), the acoustic fingerprint of an MRI system is obtained during a 60 s calibration, and used to predict anti-noise for arbitrary scan procedures. PNC achieves acoustic noise attenuation of up to 13 dB across a wide range of clinical MRI sequences, with spectral noise peak reduction of up to 96.76 % occurring between 0.6 and 1.2 kHz. These results suggest that predicted scanner noise can achieve substantial in-bore noise cancellation with the prospect of providing a cheap and scanner-independent solution for improved patient comfort.
尽管磁共振成像(MRI)检查每年每 100 名居民要做 16 次,但患者的舒适度和接受率却因暴露在巨大的声学噪声中而大打折扣。在这里,我们介绍一种利用从预测扫描仪声音中得出的抗噪声来消除声学噪声的系统。在这种被称为预测噪声消除(PNC)的方法中,核磁共振成像系统的声学指纹是在 60 秒的校准过程中获得的,并用于预测任意扫描程序的抗噪声。PNC 可在多种临床 MRI 序列中实现高达 13 分贝的声学噪声衰减,在 0.6 至 1.2 千赫之间的频谱噪声峰值衰减高达 96.76%。这些结果表明,预测扫描仪噪音可实现大量的孔内噪音消除,有望为改善患者舒适度提供一种廉价且独立于扫描仪的解决方案。
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引用次数: 0
MyoVision-US: an Artificial Intelligence-Powered Software for Automated Analysis of Skeletal Muscle Ultrasonography MyoVision-US:人工智能驱动的骨骼肌超声自动分析软件
Pub Date : 2024-04-30 DOI: 10.1101/2024.04.26.24306153
Zoe Calulo Rivera, Felipe González-Seguel, Arimitsu Horikawa-Strakovsky, Catherine Granger, Aarti Sarwal, Sanjay Dhar, George Ntoumenopoulos, Jin Chen, V. K. Cody Bumgardner, Selina M. Parry, Kirby P. Mayer, Yuan Wen
Introduction/Aims Muscle ultrasound has high utility in clinical practice and research; however, the main challenges are the training and time required for manual analysis to achieve objective quantification of morphometry. This study aimed to develop and validate a software tool powered by artificial intelligence (AI) by measuring its consistency and predictability of expert manual analysis quantifying lower limb muscle ultrasound images across healthy, acute, and chronic illness subjects.
导言/目的 肌肉超声在临床实践和研究中具有很高的实用性;然而,要实现形态学的客观量化,主要挑战在于人工分析所需的培训和时间。本研究旨在开发和验证一种由人工智能(AI)驱动的软件工具,通过测量其对健康、急性和慢性疾病受试者下肢肌肉超声图像进行量化的专家人工分析的一致性和可预测性。
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引用次数: 0
How Do Neurotransmitter Pathways Contribute to Neuroimaging Phenotypes? 神经递质通路如何影响神经影像表型?
Pub Date : 2024-04-29 DOI: 10.1101/2024.04.26.24305395
Amir Ebneabbasi, Mortaza Afshani, Arman Seyed-Ahmadi, Varun Warrier, Richard A.I. Bethlehem, Timothy Rittman
Neuroimaging could accurately reflect human behaviour in health and disease, but the mechanism by which image-derived phenotypes correspond to neurotransmitter systems remains uncertain. Prior studies have explored spatial correlations between neuroimaging phenotypes and positron emission tomography radiotracers. However, the influence of neurotransmitters goes beyond the receptors/transporters, influencing a wider array of intracellular components as pivotal parts of neurotransmitter pathways. Here, we used unsupervised learning to understand how the brain maps of healthy function (i.e., magnetoencephalography frequency-specific power) and abnormal structure (i.e., disorder-specific cortical thickness) are closely anchored to underlying neurotransmitter pathways assessed by gene expression data. To do this, we used large-scale datasets of the Human Connectome Project (HCP), Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) and Allen Human Brain Atlas (AHBA). We considered spatial and random gene null models to mitigate false positives. We replicate our analyses using different gene stability thresholds. This analytic approach paves the way for personalised medicine and advanced biomarkers.
神经成像可以准确反映人类在健康和疾病中的行为,但图像衍生表型与神经递质系统相对应的机制仍不确定。之前的研究已经探索了神经影像表型与正电子发射断层扫描放射性核素之间的空间相关性。然而,神经递质的影响并不局限于受体/转运体,它还会影响作为神经递质通路关键部分的一系列细胞内成分。在这里,我们利用无监督学习来了解健康功能(即脑磁图频率特异性功率)和异常结构(即失调特异性皮层厚度)的大脑图谱是如何与基因表达数据评估的潜在神经递质通路紧密联系在一起的。为此,我们使用了人类连接组计划(HCP)、通过元分析增强神经成像遗传学(ENIGMA)和艾伦人类脑图谱(AHBA)的大规模数据集。我们考虑了空间和随机基因空模型,以减少假阳性。我们使用不同的基因稳定性阈值进行了重复分析。这种分析方法为个性化医疗和高级生物标记铺平了道路。
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引用次数: 0
期刊
medRxiv - Radiology and Imaging
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