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Performance of Open-Source LLMs in Challenging Radiological Cases – A Benchmark Study on 4,049 Eurorad Case Reports 开放源码 LLM 在具有挑战性的放射病例中的表现--对 4,049 份 Eurorad 病例报告的基准研究
Pub Date : 2024-09-06 DOI: 10.1101/2024.09.04.24313026
Su Hwan Kim, Severin Schramm, Lisa C. Adams, Rickmer Braren, Keno K. Bressem, Matthias Keicher, Claus Zimmer, Dennis M. Hedderich, Benedikt Wiestler
Background Recent advancements in large language models (LLMs) have created new ways to support radiological diagnostics. While both open-source and proprietary LLMs can address privacy concerns through local or cloud deployment, open-source models provide advantages in continuity of access, independence from commercial update cycles, and potentially lower costs.
背景 大型语言模型(LLM)的最新进展为放射诊断提供了新的支持方式。虽然开源和专有 LLM 都能通过本地或云部署解决隐私问题,但开源模型在访问的连续性、独立于商业更新周期以及潜在的低成本方面具有优势。
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引用次数: 0
Dynamic Contrast Enhanced MRI Mapping of Vascular Permeability for Evaluation of Breast Cancer Neoadjuvant Chemotherapy Response Using Image-to-Image Conditional Generative Adversarial Networks 利用图像到图像条件生成对抗网络绘制血管通透性动态对比增强磁共振成像图,评估乳腺癌新辅助化疗反应
Pub Date : 2024-09-05 DOI: 10.1101/2024.09.04.24313070
Chad A. Arledge, Alan H. Zhao, Umit Topaloglu, Dawen Zhao
Dynamic contrast enhanced (DCE) MRI is a non-invasive imaging technique that has become a quantitative standard for assessing tumor microvascular permeability. Through the application of a pharmacokinetic (PK) model to a series of T1-weighed MR images acquired after an injection of a contrast agent, several vascular permeability parameters can be quantitatively estimated. These parameters, including Ktrans, a measure of capillary permeability, have been widely implemented for assessing tumor vascular function as well as tumor therapeutic response. However, conventional PK modeling for translation of DCE MRI to PK vascular permeability parameter maps is complex and time-consuming for dynamic scans with thousands of pixels per image. In recent years, image-to-image conditional generative adversarial network (cGAN) is emerging as a robust approach in computer vision for complex cross-domain translation tasks. Through a sophisticated adversarial training process between two neural networks, image-to-image cGANs learn to effectively translate images from one domain to another, producing images that are indistinguishable from those in the target domain. In the present study, we have developed a novel image-to-image cGAN approach for mapping DCE MRI data to PK vascular permeability parameter maps. The DCE-to-PK cGAN not only generates high-quality parameter maps that closely resemble the ground truth, but also significantly reduces computation time over 1000-fold. The utility of the cGAN approach to map vascular permeability is validated using open-source breast cancer patient DCE MRI data provided by The Cancer Imaging Archive (TCIA). This data collection includes images and pathological analyses of breast cancer patients acquired before and after the first cycle of neoadjuvant chemotherapy (NACT). Importantly, in good agreement with previous studies leveraging this dataset, the percentage change of vascular permeability Ktrans derived from the DCE-to-PK cGAN enables early prediction of responders to NACT.
动态对比增强(DCE)磁共振成像是一种无创成像技术,已成为评估肿瘤微血管通透性的定量标准。通过将药代动力学(PK)模型应用于注射造影剂后获得的一系列 T1 称重 MR 图像,可以定量估算出几个血管通透性参数。这些参数(包括衡量毛细血管通透性的 Ktrans)已被广泛用于评估肿瘤血管功能和肿瘤治疗反应。然而,将 DCE MRI 转化为 PK 血管通透性参数图的传统 PK 建模对于每幅图像有数千像素的动态扫描来说既复杂又耗时。近年来,图像到图像条件生成对抗网络(cGAN)正在成为计算机视觉领域用于复杂跨域转换任务的一种稳健方法。通过两个神经网络之间复杂的对抗训练过程,图像到图像 cGAN 学会了有效地将图像从一个域翻译到另一个域,生成的图像与目标域的图像无异。在本研究中,我们开发了一种新颖的图像到图像 cGAN 方法,用于将 DCE MRI 数据映射到 PK 血管通透性参数图。DCE 到 PK cGAN 不仅能生成与地面实况非常相似的高质量参数图,还能将计算时间大大缩短 1000 倍以上。利用癌症成像档案(TCIA)提供的开源乳腺癌患者 DCE MRI 数据,验证了 cGAN 方法绘制血管通透性图的实用性。这些数据包括乳腺癌患者在第一周期新辅助化疗(NACT)前后获得的图像和病理分析。重要的是,与之前利用该数据集进行的研究一致,从DCE-to-PK cGAN得出的血管通透性Ktrans百分比变化可以早期预测对NACT的反应者。
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引用次数: 0
Assessing Cerebral Microvascular Volumetric Pulsatility with High-Resolution 4D CBV MRI at 7T 利用 7T 高分辨率 4D CBV MRI 评估脑微血管容积脉动性
Pub Date : 2024-09-05 DOI: 10.1101/2024.09.04.24313077
Fanhua Guo, Chenyang Zhao, Qinyang Shou, Ning Jin, Kay Jann, Xingfeng Shao, Danny JJ Wang
Arterial pulsation is crucial for promoting fluid circulation and for influencing neuronal activity. Previous studies assessed the pulsatility index based on blood flow velocity pulsatility in relatively large cerebral arteries of human. Here, we introduce a novel method to quantify the volumetric pulsatility of cerebral microvasculature across cortical layers and in white matter (WM), using high-resolution 4D vascular space occupancy (VASO) MRI with simultaneous recording of pulse signals at 7T. Microvascular volumetric pulsatility index (mvPI) and cerebral blood volume (CBV) changes across cardiac cycles are assessed through retrospective sorting of VASO signals into cardiac phases and estimating mean CBV in resting state (CBV0) by arterial spin labeling (ASL) MRI at 7T. Using data from 11 young (28.4±5.8 years) and 7 older (61.3±6.2 years) healthy participants, we investigated the aging effect on mvPI and compared microvascular pulsatility with large arterial pulsatility assessed by 4D-flow MRI. We observed the highest mvPI in the cerebrospinal fluid (CSF) on the cortical surface (0.19±0.06), which decreased towards the cortical layers as well as in larger arteries. In the deep WM, a significantly increased mvPI (p = 0.029) was observed in the older participants compared to younger ones. Additionally, mvPI in deep WM is significantly associated with the velocity pulsatility index (vePI) of large arteries (r = 0.5997, p = 0.0181). We further performed test-retest scans, non-parametric reliability test and simulations to demonstrate the reproducibility and accuracy of our method. To the best of our knowledge, our method offers the first in vivo measurement of microvascular volumetric pulsatility in human brain which has implications for cerebral microvascular health and its relationship research with glymphatic system, aging and neurodegenerative diseases.
动脉搏动对促进体液循环和影响神经元活动至关重要。以往的研究根据人类相对较大的脑动脉血流速度搏动来评估搏动指数。在此,我们介绍一种新方法,利用高分辨率四维血管空间占位(VASO)磁共振成像技术,在 7T 下同时记录脉冲信号,量化大脑皮层和白质(WM)中的微血管体积搏动。通过在 7T 下回顾性地将 VASO 信号按心脏阶段分类,并通过动脉自旋标记(ASL)核磁共振成像估计静息状态下的平均 CBV(CBV0),评估微血管容积脉动指数(mvPI)和脑血容量(CBV)在整个心动周期中的变化。利用 11 名年轻(28.4±5.8 岁)和 7 名年长(61.3±6.2 岁)健康参与者的数据,我们研究了衰老对 mvPI 的影响,并将微血管搏动性与 4D 流磁共振成像评估的大动脉搏动性进行了比较。我们在皮层表面的脑脊液(CSF)中观察到最高的 mvPI(0.19±0.06),该值向皮层和大动脉方向降低。在深层 WM 中,老年参与者的 mvPI 比年轻参与者明显增加(p = 0.029)。此外,WM 深部的 mvPI 与大动脉的速度搏动指数 (vePI) 显著相关(r = 0.5997,p = 0.0181)。我们进一步进行了测试-重复扫描、非参数可靠性测试和模拟,以证明我们方法的可重复性和准确性。据我们所知,我们的方法首次提供了人脑微血管体积搏动性的活体测量,对脑部微血管健康及其与甘液系统、衰老和神经退行性疾病的关系研究具有重要意义。
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引用次数: 0
Feasibility study of the application of Magnetic Resonance Elastography (MRE) to diagnose adenomyosis 应用磁共振弹性成像(MRE)诊断子宫腺肌症的可行性研究
Pub Date : 2024-09-04 DOI: 10.1101/2024.09.03.24313024
V Jain, E Hojo, G McKillop, A Oniscu, Y Le, J Chen, R Ehman, N Roberts, HOD Critchley
Introduction Adenomyosis is an under-recognised condition in which definitive diagnosis is only possible via histology after hysterectomy, an unacceptable option for those wishing to preserve fertility. Recent cellular/molecular studies indicate adenomyotic lesions may be fibrotic leading to increased uterine tissue stiffness. 3D Magnetic Resonance Elastography (MRE) is a novel imaging technique that allows in vivo measurement of tissue stiffness (via elastograms). 3D MRE has not been reported to study adenomyosis. The feasibility study aimed to utilise a novel 3D MRE protocol to measure global uterine stiffness and to investigate its potential application for non-invasive in vivo diagnosis of adenomyosis.
导言:子宫腺肌症是一种未得到充分认识的疾病,只有在子宫切除术后通过组织学检查才能明确诊断,这对于那些希望保留生育能力的人来说是一种无法接受的选择。最近的细胞/分子研究表明,子宫腺肌症病变可能是纤维化导致子宫组织硬度增加。三维磁共振弹性成像(MRE)是一种新型成像技术,可在体内测量组织硬度(通过弹性图)。三维磁共振弹性成像技术尚未用于子宫腺肌症的研究。这项可行性研究旨在利用新颖的三维磁共振弹性成像方案测量子宫的整体硬度,并研究其在子宫腺肌症无创活体诊断中的潜在应用。
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引用次数: 0
Transcranial Ultrasound Localization Microscopy in Moya Moya patients using a clinical ultrasound system 使用临床超声系统对莫亚-莫亚患者进行经颅超声定位显微镜检查
Pub Date : 2024-09-04 DOI: 10.1101/2024.09.03.24312925
Louise Denis, Elena Meseguer, Augustin Gaudemer, Georges Jaklh, Sylvain Bodard, Georges Chabouh, Dominique Hervé, Eric Vicaut, Pierre Amarenco, Olivier Couture
Background Deep brain structures are supplied by perforating arteries, these arteries are too thin to be observed with non-invasive and widely available clinical imaging methods. In Moya Moya disease, main arteries in the base of the brain progressively narrowed, and perforating arteries grow densely and tortuously to compensate the lack of blood supply in deep brain structures.
背景 大脑深部结构由穿孔动脉供应,这些动脉过于细小,无法通过非侵入性和广泛应用的临床成像方法进行观察。在莫亚莫亚病中,大脑底部的主要动脉逐渐变窄,穿孔动脉密集而迂曲地生长,以弥补大脑深部结构的供血不足。
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引用次数: 0
Structured Clinical Reasoning Prompt Enhances LLM’s Diagnostic Capabilities in Diagnosis Please Quiz Cases 结构化临床推理提示增强了 LLM 在 "诊断请回答 "案例中的诊断能力
Pub Date : 2024-09-03 DOI: 10.1101/2024.09.01.24312894
Yuki Sonoda, Ryo Kurokawa, Akifumi Hagiwara, Yusuke Asari, Takahiro Fukushima, Jun Kanzawa, Wataru Gonoi, Osamu Abe
Background Large Language Models (LLMs) show promise in medical diagnosis, but their performance varies with prompting. Recent studies suggest that modifying prompts may enhance diagnostic capabilities.
背景大语言模型(LLMs)在医疗诊断中大有可为,但其性能因提示而异。最近的研究表明,修改提示语可以提高诊断能力。
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引用次数: 0
Model uncertainty estimates for deep learning mammographic density prediction using ordinal and classification approaches 使用序数法和分类法对乳腺 X 线照相术密度预测进行深度学习的模型不确定性估计
Pub Date : 2024-09-01 DOI: 10.1101/2024.08.31.24312184
Steven Squires, Grey Kuling, D. Gareth Evans, Anne L. Martel, Susan M. Astley
Purpose Mammographic density is associated with the risk of developing breast cancer and can be predicted using deep learning methods. Model uncertainty estimates are not produced by standard regression approaches but would be valuable for clinical and research purposes. Our objective is to produce deep learning models with in-built uncertainty estimates without degrading predictive performance.
目的 乳房X线照相密度与患乳腺癌的风险有关,可通过深度学习方法进行预测。标准回归方法无法对模型的不确定性进行估计,但这对临床和研究工作很有价值。我们的目标是在不降低预测性能的前提下,建立具有内置不确定性估计的深度学习模型。
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引用次数: 0
Quantitative Total-Body Imaging of Blood Flow with High Temporal Resolution Early Dynamic 18F-Fluorodeoxyglucose PET Kinetic Modeling 具有高时间分辨率的全身血流定量成像 早期动态 18F-Fluorodeoxyglucose PET 动力学建模
Pub Date : 2024-08-31 DOI: 10.1101/2024.08.30.24312867
Kevin J. Chung, Abhijit J. Chaudhari, Lorenzo Nardo, Terry Jones, Moon S. Chen, Ramsey D. Badawi, Simon R. Cherry, Guobao Wang
Quantitative total-body PET imaging of blood flow can be performed with freely diffusible flow radiotracers such as 15O-water and 11C-butanol, but their short half-lives necessitate close access to a cyclotron. Past efforts to measure blood flow with the widely available radiotracer 18F-fluorodeoxyglucose (FDG) were limited to tissues with high 18F-FDG extraction fraction. In this study, we developed an early-dynamic 18F-FDG PET method with high temporal resolution kinetic modeling to assess total-body blood flow based on deriving the vascular transit time of 18F-FDG and conducted a pilot comparison study against a 11C-butanol reference.
使用可自由扩散的流动放射性示踪剂(如 15O - 水和 11C - 丁醇)可对血流进行全身正电子发射计算机断层定量成像,但它们的半衰期较短,因此必须靠近回旋加速器。过去利用广泛使用的放射性示踪剂 18F-氟脱氧葡萄糖(FDG)测量血流的工作仅限于 18F-FDG 提取率较高的组织。在这项研究中,我们开发了一种具有高时间分辨率动力学模型的早期动态 18F-FDG PET 方法,根据 18F-FDG 的血管通过时间来评估全身血流量,并与 11C 丁醇参照物进行了试验性比较研究。
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引用次数: 0
Coupled stack-up volume RF coils for low-field open MR imaging 用于低场开放式磁共振成像的耦合叠加体积射频线圈
Pub Date : 2024-08-31 DOI: 10.1101/2024.08.30.24312851
Yunkun Zhao, Aditya A Bhosale, Xiaoliang Zhang
Background Low-field open magnetic resonance imaging (MRI) systems, typically operating at magnetic field strengths below 1 Tesla, has greatly expanded the accessibility of MRI technology to meet a wide range of patient needs. However, the inherent challenges of low-field MRI, such as limited signal-to-noise ratios and limited availability of dedicated radiofrequency (RF) coils, have prompted the need for innovative coil designs that can improve imaging quality and diagnostic capabilities.
背景低场开放式磁共振成像(MRI)系统通常在低于 1 特斯拉的磁场强度下运行,极大地扩展了磁共振成像技术的可及性,以满足各种患者的需求。然而,低场磁共振成像固有的挑战,如有限的信噪比和专用射频(RF)线圈的有限可用性,促使人们需要创新的线圈设计来提高成像质量和诊断能力。
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引用次数: 0
Novel AI-Driven Infant Meningitis Screening from High Resolution Ultrasound Imaging 通过高分辨率超声波成像进行新型人工智能驱动的婴儿脑膜炎筛查
Pub Date : 2024-08-30 DOI: 10.1101/2024.08.29.24312709
Hassan Sial, Francesc Carandell, Sara Ajanovic, Javier Jiménez, Rita Quesada, Fabião Santos, W. Chris Buck, Muhammad Sidat, UNITED Study Consortium, Quique Bassat, Beatrice Jobst, Paula Petrone
Background Infant meningitis can be a life-threatening disease and requires prompt and accurate diagnosis to prevent severe outcomes or death. Gold-standard diagnosis requires lumbar punctures (LP), to obtain and analyze cerebrospinal fluid (CSF). Despite being standard practice, LPs are invasive, pose risks for the patient and often yield negative results, either because of the contamination with red blood cells derived from the puncture itself, or due to the disease’s relatively low incidence due to the protocolized requirement to do LPs to discard a life-threatening infection in spite its relatively low incidence. Furthermore, in low-income settings, where the incidence is the highest, LPs and CSF exams are rarely feasible, and suspected meningitis cases are generally treated empirically. There’s a growing need for non-invasive, accurate diagnostic methods.
背景 婴儿脑膜炎是一种危及生命的疾病,需要及时准确的诊断,以防止严重后果或死亡。金标准诊断需要进行腰椎穿刺(LP),以获取和分析脑脊液(CSF)。尽管腰椎穿刺是标准做法,但它是侵入性的,对病人有风险,而且结果往往是阴性的,这可能是由于穿刺本身产生的红细胞污染,也可能是由于这种疾病的发病率相对较低,尽管其发病率相对较低,但由于协议要求做腰椎穿刺以排除危及生命的感染。此外,在发病率最高的低收入地区,LP 和 CSF 检查很少可行,疑似脑膜炎病例通常采用经验性治疗。现在越来越需要无创、准确的诊断方法。
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引用次数: 0
期刊
medRxiv - Radiology and Imaging
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