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Membrane protein clustering from tension and multibody interactions 从张力和多体相互作用看膜蛋白聚类
Pub Date : 2024-05-13 DOI: 10.1209/0295-5075/ad4ac2
Jean-Baptiste Fournier
The point-curvature model for membrane protein inclusions is shown to capture multibody interactions very well. Using this model, we find that the interplay between membrane tension and multibody interactions results in a collective attraction of oppositely curved inclusions tending to form antiferromagnetic structures with a square lattice. This attraction can produce a phase separation between curved and non-curved proteins, resulting in the clustering of curved proteins. We also show that the many-body repulsion between identical curved proteins is enhanced by membrane tension. This can lead to the dissolution of clusters stabilized by short-range forces when the tension is increased. These new phenomena are biologically relevant and could be investigated experimentally
膜蛋白内含物的点曲率模型能够很好地捕捉多体相互作用。利用这一模型,我们发现膜张力和多体相互作用之间的相互作用会导致相对弯曲的内含物产生集体吸引力,从而趋向于形成具有方形晶格的反铁磁结构。这种吸引力会在弯曲和非弯曲蛋白质之间产生相分离,导致弯曲蛋白质聚集。我们还发现,膜张力会增强相同曲面蛋白质之间的多体排斥力。当张力增加时,这可能导致由短程力稳定的集群解体。这些新现象与生物学相关,可以通过实验进行研究
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引用次数: 0
Thermodynamic properties of an interacting fermion-antifermion pair in a magnetized spacetime with a non-zero cosmological constant 具有非零宇宙常数的磁化时空中一对相互作用费米子-反费米子的热力学性质
Pub Date : 2024-05-10 DOI: 10.1209/0295-5075/ad49d2
A. Guvendi, A. Boumali
In a magnetized three-dimensional Bonnor-Melvin spacetime with non-zero cosmological constant, we explore the dynamics of a fermion-antifermion pair interacting through an attractive Coulomb potential. To analyze the relativistic behavior, we seek an analytical solution for the fully covariant two-body Dirac equation derived from quantum electrody- namics. The resulting equation provides a non-perturbative second-order wave equation that govers the relative motion of the interacting pair. Remarkably, we find exact solubility when considering the interaction as short-range. Consequently, we determine the energy eigenvalues and wave functions utilizing well-known special functions. By employing these solutions, we determine the thermal properties of this system. Despite the divergence observed in the partition function, we effectively tackle this issue by applying a regularization technique based on the mathematical zeta Hurwitz function. This method facilitates the computation of various thermal quantities, such as free energy, total energy, entropy function, and specific heat. Consequently, we provide an in-depth analysis of the thermodynamic characteristics of the system under consideration.
在具有非零宇宙常数的磁化三维波诺-梅尔文时空中,我们探索了一对费米子-反费米子通过有吸引力的库仑势相互作用的动力学。为了分析相对论行为,我们寻求从量子电学导出的完全协变的双体狄拉克方程的解析解。由此得到的方程提供了一个非微扰的二阶波方程,涵盖了相互作用对的相对运动。值得注意的是,当把相互作用视为短程时,我们发现了精确的溶解性。因此,我们利用著名的特殊函数确定了能量特征值和波函数。利用这些解法,我们确定了该系统的热特性。尽管在分配函数中观察到了发散现象,但我们通过应用基于数学 zeta Hurwitz 函数的正则化技术,有效地解决了这一问题。这种方法有助于计算各种热量,如自由能、总能、熵函数和比热。因此,我们对所考虑系统的热力学特性进行了深入分析。
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引用次数: 0
Pseudomagnetic fields in bilayer phononic crystals 双层声子晶体中的伪磁场
Pub Date : 2024-05-03 DOI: 10.1209/0295-5075/ad473d
Zhenlin Fu, Riyi Zheng, Jialuo Liang, Jiuyang Lu, Weiyin Deng, Man-Zhu Ke, Xueqin Huang, Zheng-Wei Liu
Pseudomagnetic field (PMF), as an artificial gauge field, has attracted widespread attention in the exploration of magnetic-like effects in artificial structural materials. It offers a novel mechanism for manipulating wave fields in classical wave systems where there is no or weak response to actual magnetic fields. In this work, we construct acoustic PMFs in bilayer phononic crystals by imposing uniaxial linear gradient strain on the scatterers of both layers. Under the PMFs, the linear nodal rings, occurring at around the K and K′ points of the bilayer phononic crystals, split into acoustics Landau levels (LLs). Specifically, the = 0 plateau of the LLs splits into two discrete ones due to the interlayer coupling. Furthermore, we construct two heterostructures by splicing two phononic crystals with opposite PMFs and observe unique in-plane snake-like propagations of the edge state as well as oscillations between the upper and lower layers. Bilayer structure provides additional degree of freedom to generate PMFs in various types of semimetals and enriches the manipulation of acoustic wave propagations. In addition, it can be extended to other classical wave systems, such as electromagnetic wave and mechanical systems.
伪磁场(PMF)作为一种人工规整场,在探索人工结构材料的类磁效应方面引起了广泛关注。它为在经典波系统中操纵波场提供了一种新的机制,在经典波系统中,对实际磁场没有反应或反应微弱。在这项研究中,我们通过对双层声子晶体的散射体施加单轴线性梯度应变,在双层声子晶体中构建了声学 PMF。在PMFs作用下,双层声子晶体K点和K′点附近的线性节点环分裂成声学朗道级(LLs)。具体来说,由于层间耦合,LLs 的 = 0 高原分裂成两个离散的高原。此外,我们还通过拼接两个具有相反 PMF 的声波晶体来构建两种异质结构,并观察到边缘状态独特的面内蛇形传播以及上下两层之间的振荡。双层结构为在各种类型的半金属中产生 PMF 提供了额外的自由度,并丰富了对声波传播的操纵。此外,它还可以扩展到其他经典波系统,如电磁波和机械系统。
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引用次数: 0
Tuning of magnetic bistability and domain wall dynamics in magnetic microwires 调谐磁微线中的磁双稳态性和畴壁动力学
Pub Date : 2024-04-25 DOI: 10.1209/0295-5075/ad4390
A. Zhukov, P. Corte-León, A. Talaat, J. Blanco, Alvaro González, A. García-Gómez, V. Zhukova
A unique combination of unusual magnetic properties, such as magnetic bistability associated with ultrafast domain wall propagation or ultrasoft magnetic properties, together with excellent mechanical and corrosion properties can be obtained in amorphous microwires. Such ferromagnetic microwires coated with insulating and flexible glass-coating with diameters ranging from 0.1 to 100 µm can be prepared using the Taylor-Ulitovsky method. Magnetic properties of glass-coated microwires are affected by chemical compositions of the metallic nucleus and can be substantially modified by post-processing. We provide an overview of the routes allowing tuning of hysteresis loops and domain wall dynamics in amorphous microwires and new experimental results on the dependence of hysteresis loops on exter-nal stimuli, such as applied stress and temperature.
非晶微线具有独特的非同寻常的磁性能(如与超快畴壁传播相关的磁双稳态或超软磁性能),同时还具有优异的机械和腐蚀性能。使用泰勒-乌利托夫斯基方法可以制备这种涂有绝缘和柔性玻璃涂层的铁磁微线,其直径在 0.1 到 100 微米之间。玻璃涂层微线的磁性能受金属核化学成分的影响,并可通过后处理进行大幅改良。我们概述了调整非晶微线磁滞环和畴壁动力学的途径,以及磁滞环对外部刺激(如外加应力和温度)的依赖性的新实验结果。
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引用次数: 0
Intrinsic conformal order revealed in geometrically confined long-range repulsive particles 揭示几何约束长程斥力粒子的内在共形秩序
Pub Date : 2024-04-24 DOI: 10.1209/0295-5075/ad42cf
Zhenwei Yao
Elucidating long-range interaction guided organization of matter is a fundamental question in physical systems covering multiple length scales. Here, based on the hexagonal disk model, we analyze the characteristic inhomogeneity created by long-range repulsions, and reveal the intrinsic conformal order in particle packings in equilibrium. Specifically, we highlight the delicate angle-preserved bending of the lattice to match the inhomogeneity condition. The revealed conformal order is found to be protected by the surrounding topological defects. These results advance our understanding on long-range interacting systems, and open the promising possibilities of using long-range forces to create particle packings not accessible by short-range forces, which may have practical consequences.
阐明长程相互作用引导的物质组织是涵盖多个长度尺度的物理系统中的一个基本问题。在此,我们以六边形圆盘模型为基础,分析了长程斥力产生的特征性不均匀性,并揭示了平衡状态下粒子堆积的内在共形秩序。具体而言,我们强调了晶格为匹配不均匀性条件而保留的微妙角度弯曲。我们发现,所揭示的保形秩序受到了周围拓扑缺陷的保护。这些结果推进了我们对长程相互作用系统的理解,并为利用长程力创造短程力无法触及的粒子堆积开辟了前景广阔的可能性,这可能会产生实际影响。
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引用次数: 0
The equivalences of community detection methods for bipartite networks 双方位网络群落检测方法的等价性
Pub Date : 2024-04-23 DOI: 10.1209/0295-5075/ad41be
Guolin Wu, Jinzhao Wu, Changgui Gu, Yuan Yuan, Haitao Tang
Investigating the community structures of bipartite networks is a frequent topic of discussion in the ecological and social fields. The most widely used methods, as proposed by numerous academics from varying perspectives, include spectral graph partitioning, modularity, nonnegative matrix factorization, and stochastic block model. In this paper, we demonstrate three equivalences among these four methods. One, both Dhillon spectral graph partitioning and Barber modularity clustering are equivalent to solving for the matrix's left and right singular vectors after relaxing the discrete constraints. Two, the nonnegative matrix factorization clustering is equivalent to the Dhillon spectral graph partitioning. Three, The bipartite stochastic block model is equivalent to the constraint-based NMF that uses K-L divergence as its cost function. These equivalences, obtained through rigorous mathematical derivations, will aid in the future development of efficient algorithms for community detection in bipartite networks.
研究双方位网络的群落结构是生态和社会领域经常讨论的话题。众多学者从不同角度提出了最广泛使用的方法,包括谱图分割法、模块化法、非负矩阵因式分解法和随机块模型。在本文中,我们证明了这四种方法之间的三个等价性。其一,Dhillon 谱图分割法和 Barber 模块化聚类法都等价于在放松离散约束后求解矩阵的左右奇异矢量。其二,非负矩阵因式分解聚类等价于 Dhillon 谱图分割法。第三,双方位随机块模型等价于使用 K-L 发散作为代价函数的基于约束的 NMF。这些等价关系是通过严格的数学推导得到的,将有助于未来在双方格网络中开发高效的群落检测算法。
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引用次数: 0
A generalized stochastic block model for overlapping community detection 用于重叠群落检测的广义随机块模型
Pub Date : 2024-04-22 DOI: 10.1209/0295-5075/ad4172
Xuan-Chen Liu, Li-Jie Zhang, Xin-Jian Xu
Over the past two decades, community detection has been extensively explored. Yet, the challenge of identifying overlapping communities remains unresolved. In this letter, we introduces a novel approach called the generalized stochastic block model, which addresses this issue by allowing nodes to belong to multiple communities. This approach extends the traditional representation of nodal community assignment from a single community label to a label vector, with each element indicating the membership of a node in a specific community. To tackle this model, we develop a Markov Chain Monte Carlo algorithm. Through numerical experiments conducted on synthetic and empirical networks, we demonstrate the efficacy of our proposed framework in accurately detecting overlapping communities.
在过去二十年里,人们对社群检测进行了广泛的探索。然而,识别重叠社区的难题仍未解决。在这封信中,我们介绍了一种名为广义随机块模型的新方法,通过允许节点属于多个社区来解决这个问题。这种方法将节点社群分配的传统表示方法从单一社群标签扩展为标签向量,每个元素表示节点在特定社群中的成员资格。为了解决这个模型,我们开发了一种马尔可夫链蒙特卡洛算法。通过在合成网络和经验网络上进行的数值实验,我们证明了我们提出的框架在准确检测重叠社区方面的有效性。
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引用次数: 0
Hyper-network models for civil aviation systems 民航系统超网络模型
Pub Date : 2024-04-22 DOI: 10.1209/0295-5075/ad4173
Longlong Sun, Lisha He, Qi Zhang, Yue Chu, Huijie Yang
In a civil aviation system, each air-route could penetrate several sectors, and each sector can also be passed through by multiple air-routes. Two dual hyper-networks are proposed to model the facts, where the air-routes/sectors are taken as nodes/hyper-edges (model RS) and hyper-edges/nodes (model SR), respectively. They both share a growth mechanism of preferential attachment, resulting from which the Weibull distributions for the hyper-degrees of model RS and the hyper-edge cardinalities of model SR. The civil aviation systems in Mainland China turn out to follow an anti-preferential attachment.
在民用航空系统中,每条航线可以穿透多个扇区,每个扇区也可以被多条航线穿过。本文提出了两个双重超网络模型,分别将航线/航段作为节点/超边(模型 RS)和超边/节点(模型 SR)。它们都具有优先附着的增长机制,由此产生了模型 RS 的超度和模型 SR 的超边心数的 Weibull 分布。而中国大陆的民航系统则是反偏好依附。
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引用次数: 0
On the electromagnetic interaction and the anomalous term in the Duffin-Kemmer-Petiau theory 关于达芬-凯末尔-佩蒂奥理论中的电磁相互作用和反常项
Pub Date : 2024-04-16 DOI: 10.1209/0295-5075/ad3f48
A. G. Jirón Vicente, Luis B. Castro, Antonio S. de Castro, A. Obispo
The problem of vectorial mesons embedded in an electromagnetic field via Duffin-Kemmer-Petiau (DKP) formalism is reinvestigated. Considering the electromagnetic interaction as a minimal coupling, an incorrect value (g = 1) is identified for the gyromagnetic factor (g-factor). Furthermore, it is shown that is cumbersome to find analytical solutions due to the presence of the so-called anomalous term for the spin-1 sector of the DKP theory. Suspecting that the anomalous term results from an incomplete version of the DKP equation to describe the electromagnetic interaction, we consider the addition of a non-minimal coupling. This leads to the correct g-factor (g = 2), and as a consequence, the anomalous term becomes proportional to an external four current. As an application, the DKP equation with a static uniform magnetic field is considered, yielding the corresponding Landau levels.
通过达芬-凯默-佩蒂奥(DKP)形式主义重新研究了嵌入电磁场的矢量介子问题。将电磁相互作用视为最小耦合,发现了回旋磁因子(g-因子)的错误值(g = 1)。此外,由于 DKP 理论的自旋-1 扇区存在所谓的反常项,因此寻找解析解非常麻烦。我们怀疑反常项是由于描述电磁相互作用的 DKP 方程版本不完整造成的,因此考虑添加一个非最小耦合。这导致了正确的 g 因子(g = 2),因此,反常项变得与外部四电流成正比。作为应用,我们考虑了静态均匀磁场下的 DKP 方程,并得出了相应的朗道水平。
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引用次数: 0
Thermodynamic constraints on kinetic perturbations of homogeneous driven diffusions 均质驱动扩散动力学扰动的热力学约束
Pub Date : 2024-04-15 DOI: 10.1209/0295-5075/ad40cd
Qi Gao, Hyun-Myung Chun, Jordan M. Horowitz
We analyze the static response to kinetic perturbations of nonequilibrium steady states that can be modeled as diffusions. We demonstrate that kinetic response is purely a nonequilibirum effect, measuring the degree to which the Fluctuation-Dissipation Theorem is violated out of equilibrium. For driven diffusions in a flat landscape, we further demonstrate that such response is constrained by the strength of the nonequilibrium driving via quantitative inequalities.
我们分析了非平衡稳态对动力学扰动的静态响应,这种扰动可被模拟为扩散。我们通过测量非平衡状态下违反波动-消散定理的程度,证明动力学响应纯粹是一种非平衡效应。对于平坦景观中的驱动扩散,我们进一步证明,这种响应通过定量不等式受到非平衡驱动强度的限制。
{"title":"Thermodynamic constraints on kinetic perturbations of homogeneous driven diffusions","authors":"Qi Gao, Hyun-Myung Chun, Jordan M. Horowitz","doi":"10.1209/0295-5075/ad40cd","DOIUrl":"https://doi.org/10.1209/0295-5075/ad40cd","url":null,"abstract":"\u0000 We analyze the static response to kinetic perturbations of nonequilibrium steady states that can be modeled as diffusions. We demonstrate that kinetic response is purely a nonequilibirum effect, measuring the degree to which the Fluctuation-Dissipation Theorem is violated out of equilibrium. For driven diffusions in a flat landscape, we further demonstrate that such response is constrained by the strength of the nonequilibrium driving via quantitative inequalities.","PeriodicalId":503117,"journal":{"name":"Europhysics Letters","volume":"47 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140701543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Europhysics Letters
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