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Complex Genomic Rearrangement Patterns in Malignant Pleural Mesothelioma due to Environmental Asbestos Exposure. 环境石棉暴露所致恶性胸膜间皮瘤的复杂基因组重排模式
IF 2.4 Pub Date : 2024-01-01 DOI: 10.1615/JEnvironPatholToxicolOncol.2023046200
Tunç Tuncel, Güntülü Ak, Hasan Veysi Güneş, Muzaffer Metintaş

Malignant pleural mesothelioma (MPM) is a rare type of cancer, and its main risk factor is exposure to asbestos. Accordingly, our knowledge of the genomic structure of an MPM tumor is limited when compared to other cancers. In this study, we aimed to characterize complex genomic rearrangement patterns and variations to better understand the genomics of MPM tumors. We comparatively scanned 3 MPM tumor genomes by Whole-Genome Sequencing and High-Resolution SNP array. We also used various computational algorithms to detect both CNAs and complex chromosomal rearrangements. Genomic data obtained from each bioinformatics tool are interpreted comparatively to better understand CNAs and cancer-related Nucleotide variations in MPM tumors. In patients 1 and 2, we found pathogenic nucleotide variants of BAP1, RB1, and TP53. These two MPM genomes exhibited a highly rearranged chromosomal rearrangement pattern resembling Chromomanagesis particularly in the form of Chromoanasynthesis. In patient 3, we found nucleotide variants of important cancer-related genes, including TGFBR1, KMT2C, and PALLD, to have lower chromosomal rearrangement complexity compared with patients 1 and 2. We also detected several actionable nucleotide variants including XRCC1, ERCC2. We also discovered the SKA3-DDX10 fusion in two MPM genomes, which is a novel finding for MPM. We found that MPM genomes are very complex, suggesting that this highly rearranged pattern is strongly related to driver mutational status like BAP1, TP53 and RB1.

恶性胸膜间皮瘤(MPM)是一种罕见的癌症,其主要风险因素是接触石棉。因此,与其他癌症相比,我们对 MPM 肿瘤基因组结构的了解十分有限。在本研究中,我们旨在描述复杂的基因组重排模式和变异,以更好地了解 MPM 肿瘤的基因组学。我们通过全基因组测序和高分辨率 SNP 阵列对 3 个 MPM 肿瘤基因组进行了比较扫描。我们还使用各种计算算法检测 CNA 和复杂染色体重排。我们对每种生物信息学工具获得的基因组数据进行了比较解读,以更好地理解 MPM 肿瘤中的 CNA 和癌症相关核苷酸变异。在患者 1 和 2 中,我们发现了 BAP1、RB1 和 TP53 的致病核苷酸变异。这两个 MPM 基因组表现出高度重排的染色体重排模式,类似于 Chromomanagesis,尤其是以 Chromoanasynthesis 的形式出现。在患者 3 中,我们发现重要癌症相关基因的核苷酸变异,包括 TGFBR1、KMT2C 和 PALLD,与患者 1 和 2 相比,染色体重排复杂度较低。我们还检测到几个可操作的核苷酸变异,包括 XRCC1 和 ERCC2。我们还在两个 MPM 基因组中发现了 SKA3-DDX10 融合体,这是 MPM 的一项新发现。我们发现 MPM 基因组非常复杂,表明这种高度重排模式与 BAP1、TP53 和 RB1 等驱动基因突变状态密切相关。
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引用次数: 0
Seropositive Ocular Myasthenia Gravis Developing Shortly After COVID-19 Infection: Report and Review of the Literature. COVID-19感染后不久发生血清学阳性的眼部重症肌无力:报告和文献回顾
IF 2.9 Pub Date : 2023-12-01 Epub Date: 2022-03-24 DOI: 10.1097/WNO.0000000000001586
Natalie Brossard-Barbosa, Laura Donaldson, Edward Margolin
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引用次数: 3
Transesterification of Waste Cooking Oil Using Natural and Chemical Materials as Catalyst 天然和化学原料催化废食用油酯交换反应的研究
Pub Date : 2023-08-11 DOI: 10.4028/p-EnBm0E
Marwa F. Abdul Jabbar, Abdulkareem Dahash Affat, Luay Badr Hamad
Due to the greenhouse effect of increased fossil fuel use, resulting in an increase in the period during which fossil fuels will remain available. Because of its advantages for the environment and its production from renewable resources, biodiesel has grown more appealing. As there is a supply of used cooking oil, interest in producing biodiesel is rising. This research examines how CaO and sawdust function as heterogeneous catalysts in transesterification regarding ethanol to produce bio-diesel from the used cooking oil. The impacts of the subsequent variables on the yield of the created biodiesel were investigated. Those parameters include the catalyst concentration (0.5-3 wt%), reaction period (1-4 hr), the molar ratio of ethanol to oil (8:1– 20:1), and temperature (45 to 80 °C). This led to the discovery that CaO catalyst is more efficient compared to the sawdust catalyst, with the maximum percentage yield being 75% for the sawdust catalyst and 95% for the CaO catalyst under catalyst conditions (0.50%), ethanol oil molar ratio of 20:1, and 65 Celsius temperature for 3 hours. It was evident from the results that the biodiesel fuel produced by the catalyst developed in this study fell within the acceptable range of biodiesel fuel.
由于化石燃料使用增加的温室效应,导致化石燃料可用的时间增加。由于生物柴油对环境的好处和其可再生资源的生产,生物柴油越来越受欢迎。由于二手食用油供应充足,人们对生产生物柴油的兴趣正在上升。本研究考察了CaO和锯末作为多相催化剂在用废食用油进行乙醇酯交换制生物柴油中的作用。考察了后续变量对生物柴油产率的影响。这些参数包括催化剂浓度(0.5- 3wt %)、反应时间(1-4小时)、乙醇与油的摩尔比(8:1 - 20:1)和温度(45 ~ 80℃)。结果表明,与木屑催化剂相比,CaO催化剂效率更高,在催化剂条件(0.50%)、乙醇油摩尔比为20:1、65摄氏度温度下,CaO催化剂的最大收率为75%,CaO催化剂的最大收率为95%。结果表明,本研究开发的催化剂生产的生物柴油燃料在生物柴油燃料的可接受范围内。
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引用次数: 0
Maximizing High Value Light Products by Catalytic Cracking of VGO Produced by Iraqi Refinery over Formulated FCC Catalyst 利用配方FCC催化剂催化裂化伊拉克炼油厂生产的VGO,实现高价值轻产品的最大化
Pub Date : 2023-08-11 DOI: 10.4028/p-kL6QSL
Samer Abdulridha, A. Radhi, Marwa N. Abbas, Amal K. Shehab, Wisam M. Aluaibi
Prototype of FCC catalyst were formulated by mixing the stabilised Y zeolites (68wt%) with polyvinal alcohol (PVA) (7%) as a solution binder and bentonite (25%). The Y zeolite including the original HY with Si/Al of 2.6 (cat.-2.6) and dealuminated HY with Si/Al of 30 (cat.-30) were used and tested for catalytic cracking of Iraqi vacuum gas oil (VGO) obtained from Al-Dura refinery using a pilot plant. The cracking process was carried out at a temperature of 520 °C and atmospheric pressure, The weight ratio of catalyst / oil ratio was 3 and 5. The results show that higher conversion of 77 wt. % and better product distribution (gasoline, kerosene and gas oil) could be obtained over cat.30 resulting to a good liquid product yield. The catalytic activity, in terms of VGO conversion was not affected over cat.-30 in spite of its lower acidity, suggesting the determinate of mesoporosity in the Y zeolite (cat.-30) catalysed cracking reactions. A higher yield of ~ 67 wt% to mid-distillates (i.e.Naphtha and kerosene) was as a result of the improvements in the diffusion to and from catalyst structure.
将稳定的Y型沸石(68wt%)与聚乙烯醇(PVA)(7%)作为溶液粘合剂和膨润土(25%)混合配制FCC催化剂原型。在中试装置上对Al- dura炼油厂生产的伊拉克真空瓦斯油(VGO)进行了催化裂化试验,其中Y型沸石包括Si/Al为2.6 (cat.-2.6)的原HY和Si/Al为30 (cat.-30)的脱铝HY。裂化过程在520℃常压下进行,催化剂/油的重量比为3和5。结果表明,该方法可获得较高的转化率(77.wt . %)和较好的产品分配(汽油、煤油和柴油)。产生良好的液体产品收率。在VGO转化方面,催化活性不受cat的影响。-30分子筛虽然酸度较低,但表明在Y分子筛(cat.-30)中介孔的测定催化了裂化反应。由于催化剂结构的改进,中间馏分(即石脑油和煤油)的收率提高了~ 67 wt%。
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引用次数: 0
Studying the Factors Affecting De-Emulsification of Crude Oil 原油脱乳化影响因素的研究
Pub Date : 2023-08-11 DOI: 10.4028/p-aYNBt6
Zolfa Q. Atshan, M. A. Mohammed
The paper deals with highly stable emulsions. It is concentrated on de-emulsification of crude oil. In the petroleum industry, de-emulsification is an important and urgent task that is typically required for the treatment of crude oil. This work, suggests method using coupling device integrated centrifuge with chemical to strengthen the de-emulsification efficiency. A number of de-emulsification runs were conducted to determine how centrifuge and chemical components affected the effectiveness of de-emulsifying crude oil and the separation of water, Different types of de-emulsifiers the (ethylene glycol, choline chloride and ethyl cellulose), were used with different concentration of de-emulsifiers, de-emulsification time in centrifuge and centrifugal speed. Also studied at the same time. Studies on the de-emulsification of crude oil were conducted at room temperature. As the concentration of de-emulsifiers was increased, crude oil's de-emulsification efficiency rose , centrifuge time and centrifugal speed ,with de-emulsifier type effect on de- emulsification ,which reached maximum (85.9%,84.4% and 74.07%) at rate 4% of ethylene glycol, choline chloride and ethyl cellulose respectively ,at 60 min and 4000 rpm . This method provides higher water separation from crude oil emulsion and quicker method.
本文研究的是高度稳定的乳剂。主要研究原油的脱乳化。在石油工业中,除乳剂是一项重要而紧迫的任务,通常需要对原油进行处理。本文提出了采用耦合装置将离心机与化工设备集成在一起来提高脱乳效率的方法。采用不同类型的脱乳化剂(乙二醇、氯化胆碱和乙基纤维素),在不同的脱乳化剂浓度、离心脱乳剂时间和离心转速下进行了脱乳剂试验,确定了离心机和化学成分对原油脱乳剂效果和水分离效果的影响。同时也在学习。在室温条件下对原油进行了脱乳研究。随着脱乳化剂浓度的增加,原油的脱乳化效率、离心时间和离心转速均有所提高,脱乳化剂类型对原油脱乳化效果的影响最大,分别在乙二醇、氯化胆碱和乙基纤维素质量分数为4%、60 min和4000 rpm时达到最大,分别为85.9%、84.4%和74.07%。该方法对原油乳化液的水分离效果好,速度快。
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引用次数: 0
Depolymerization of Cellulose Components from Oil Palm Empty Fruit Bunches in Bleaching and Delignification Process 油棕空果束纤维素组分在漂白和脱木质素过程中的解聚
Pub Date : 2023-08-11 DOI: 10.4028/p-ugJQs1
S. Susi, M. Ainuri, W. Wagiman, M. Affan, Fajar Falah
Oil palm empty fruit bunches (OPEFB) are oil palm industry waste which is indeed abundant. OPEFB waste has been explorated to make fiber, cellulose, and its derivatives. In the process of extracting cellulose, there is depolymerization of several components, both hemicellulose, lignin, color, and structural elements. The combination of bleaching under acidic conditions and alkaline delignification gave different changes, one of which depends on the type of bleacher, concentration, reaction time, and the number of stages carried out. This study aimed to examine the effect of NaClO2 concentration and bleaching time on the physical and chemical characteristics that indicate the depolymerization process of OPEFB fiber. Depolymerization can be indicated by changes in the cellulose color, the content of cellulose, and the changes in cellulose crystallinity. The change of cellulose mass was affected by the bleacher concentration and the bleaching time. High concentrations of bleacher will reduce the cellulose mass significantly. Similarly, the depolymerization of the chromophore elements in OPEFB fiber will show a change in color from brown to gray-white with different brightness intensities. The XRD test indicated that there was a correlation between low crystallinity with the use of high bleacher concentrations.
油棕空果束(OPEFB)是油棕工业的废弃物,储量丰富。利用OPEFB废弃物制备纤维、纤维素及其衍生物。在提取纤维素的过程中,有几种组分的解聚,包括半纤维素、木质素、颜色和结构元素。酸性条件下的漂白和碱性脱木质素的组合产生了不同的变化,其中一个变化取决于漂白剂的类型、浓度、反应时间和进行的阶段数。本研究旨在考察NaClO2浓度和漂白时间对OPEFB纤维解聚过程理化特性的影响。解聚可以通过纤维素颜色的变化、纤维素含量的变化和纤维素结晶度的变化来表示。纤维素质量的变化受漂白剂浓度和漂白时间的影响。高浓度的漂白剂会显著减少纤维素质量。同样,OPEFB纤维中的发色团元素解聚后,随着亮度强度的不同,颜色也会由棕色变为灰白色。XRD测试表明,低结晶度与高漂白剂浓度的使用有相关性。
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引用次数: 0
A Review: Membrane Reactor for Hydrogen Production: Modeling and Simulation 膜式制氢反应器的建模与仿真研究进展
Pub Date : 2023-08-11 DOI: 10.4028/p-XakNe1
Alaa Hasan Kassi, T. Al-Hattab
A membrane reactor is a multifactional vessel used for H2 production. Hydrogen's three spectrum colors are dependent on carbon present. Two types of membrane with high permeability to hydrogen (polymeric and metallic) Hydrogen is produced in two systems: conventional reactors and membrane reactors (which separate and purify hydrogen in a single vessel). There are many types of membrane reactors according to design (catalytic membrane reactor (CMR), fixed bed reactor (FBMR), fluidized bed reactor (FBMR), etc. The transport mechanism of H2 through the membrane by a "sorption-diffusion mechanism" and the government equations that are used for membrane reactor modeling and simulation, such as continuity, momentum, mass, and heat transfer equations of the CMR, and the thickness of the membrane. These equations are solved by MATLAB, COMSOL, and the Finite Element Method to simulate the MR at different parameters: rate of conversion, rate of sweep gas, temperature, pressure, rate of H2 permeation through a membrane, and activity of the catalyst. We summarized theoretical studies for membrane reactors, including the operation conditions, type of hydrocarbon feed, type of production method, kind of catalyst, and heat effect.
膜反应器是一种用于制氢的多组分容器。氢的三种光谱颜色取决于存在的碳。氢在两种系统中产生:传统反应器和膜反应器(在单个容器中分离和纯化氢)。膜反应器按设计有多种类型(催化膜反应器(CMR)、固定床反应器(FBMR)、流化床反应器(FBMR)等。H2通过“吸附-扩散机制”在膜上的输运机制,以及用于膜反应器建模和仿真的政府方程,如CMR的连续性、动量、质量和传热方程,以及膜的厚度。利用MATLAB、COMSOL和有限元方法对这些方程进行求解,模拟了不同参数(转化率、扫气速率、温度、压力、H2通过膜的速率和催化剂活性)下的MR反应。综述了膜反应器的理论研究,包括操作条件、烃类进料类型、生产方法类型、催化剂类型和热效应。
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引用次数: 0
Chemical Compositions of Essential Oil of Agarwood (Aquilaria crassna) Harvested in Phu Quoc Island, Vietnam 越南富国岛沉香(Aquilaria crassna)精油的化学成分
Pub Date : 2023-08-11 DOI: 10.4028/p-oHM1mQ
T. Q. Toan, T. Dinh, T. Tran, Thi Bich Hoang, Q. Pham, Quyet Chien Nguyen, N. N. Quy, Thanh Viet Nguyen
The importance of natural products derived from Agarwood species is increasingly emphasized in the production of perfumery or cosmetic products made on Agarwood species. On the other hand, due to the predominant amount of aromatic compounds in essential oils, frankincense essential oil is increasingly popular with high economic value. Therefore, in this study, we focused on the extraction process of essential oils and evaluated the chemical composition present in the essential oils by the GC-MS method. Differences in the composition of essential oils between natural and artificial agarwood may be due to species, habitat conditions, climate, geographical conditions, and extraction methods in different regions. Specifically, volatile components in essential oils were identified as Neopetasone (14.43%); Dihydroagarofuran-15-al (9.20%); Jinko-cramol (5.02%); Valeriano (4.94%); Agarofuran (8.02%); Dihydrokaranone (3.25%), Valenca-1 (10), 8-dien-11-ol (5.95%) and Selina-4,11-dien-14-al (2.73%), contribute to determining the main aroma in Agarwood essential oil.
从沉香中提取的天然产品的重要性在以沉香为原料的香水或化妆品生产中越来越受到重视。另一方面,由于精油中芳香族化合物的含量占主导地位,乳香精油越来越受欢迎,具有很高的经济价值。因此,在本研究中,我们重点研究了精油的提取工艺,并采用气相色谱-质谱法对精油中的化学成分进行了评价。天然沉香和人工沉香精油成分的差异可能与不同地区的物种、生境条件、气候、地理条件和提取方法有关。其中,精油挥发性成分为新佩他松(14.43%);Dihydroagarofuran-15-al (9.20%);Jinko-cramol (5.02%);Valeriano (4.94%);Agarofuran (8.02%);二氢卡拉酮(3.25%)、Valenca-1(10)、8-二烯-11-醇(5.95%)和selina -4,11-二烯-14-al(2.73%)是沉香精油的主要香气成分。
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引用次数: 0
Propolis Bioactive Compounds of Stingless Bees (Tetragonula laeviceps) from Mount Merapi Slope, Sleman, Yogyakarta 日惹Sleman Merapi山无刺蜂(Tetragonula laeviceps)蜂胶活性物质研究
Pub Date : 2023-08-11 DOI: 10.4028/p-g9Eic6
I. Sudaryadi, F. Oktaweni, I. E. Pramono, K. W. Fatikasary, H. Widiawati, S. Sutikno
The emergence of many new diseases due to viruses and bacteria demands for an increase in the discovery of natural alternative medicines. One example of sources of natural medicine is the honey and the propolis of Tetragonula laeviceps bee. The efficacy, physical and chemical properties of honey are known to be influenced by the type of pollen and the environment whilst the composition of propolis is influenced by the geological factors. Therefore, the purpose of this research was to study the composition of propolis’ bioactive compounds of T.laeviceps bee from Mount Merapi Slope, Sleman, Yogyakarta. The bioactive compound composition of the propolis sample were analysed by Gas Chromatograph-Mass Spectrometry (GC-MS). The analysis showed that the propolis has various type of compounds containing up to 20 bioactive compounds which can be classified in three different groups namely alkaloids (70%), phenolics (20%), and terpenoids (5%). Most of these compounds were found to be biologically important. However, further research is still required to confirm the potential antimicrobial properties of the propolis’ bioactive compounds.
由于病毒和细菌引起的许多新疾病的出现,要求增加对天然替代药物的发现。天然药物来源的一个例子是蜜蜂的蜂蜜和蜂胶。蜂蜜的功效和理化性质受花粉种类和环境的影响,蜂胶的组成受地质因素的影响。因此,本研究的目的是研究来自日惹市Sleman Merapi坡的laeviceps蜜蜂蜂胶的生物活性成分。采用气相色谱-质谱(GC-MS)分析蜂胶样品的生物活性化合物组成。分析表明,蜂胶含有多种类型的化合物,含有多达20种生物活性化合物,可分为生物碱(70%)、酚类(20%)和萜类(5%)三大类。这些化合物中的大多数被发现具有重要的生物学意义。然而,还需要进一步的研究来证实蜂胶生物活性化合物的潜在抗菌特性。
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引用次数: 0
Synthesis and Characterization of Carbonate Hydroxyapatite from Pinctada Maxima Shell with Short Aging Time for Bone Biomaterial Candidate 短老化时间大锥蚌壳碳酸盐羟基磷灰石的合成与表征
Pub Date : 2023-06-20 DOI: 10.4028/p-08k84g
M. Megawati, D. J. Patty, Y. Yusuf
Biomaterial products for bone repair are needed to support accelerated tissue healing. This research aimed to synthesize and characterize carbonate hydroxyapatite (CHA) from Pinctada maxima (P. maxima) using the precipitation method with a short aging time, 15 min. CHA was dried with oven-dry at 100°C for 12 h (CHA A) and a furnace-dry at 1000°C for 2 h (CHA B). Short aging time succeeded in producing CHA B-type with lattice parameters and of CHA A is 9.382 and 6.964 , while 9.451 and 6.962 for CHA B. The high temperature treatment made the diffraction peak indicating CHA more detected and crystallinity increased to 97.87%. The appearance of C–O bond and diffraction peaks of CHA verified substituted carbonates hydroxyapatite.
骨修复需要生物材料产品来支持加速组织愈合。短句来源本研究利用沉淀法制备了一种碳酸盐型羟基磷灰石(CHA),时效时间短,为15 min。CHA在100℃下烘干12 h (CHA a),在1000℃下烘干2 h (CHA B),在短时间内成功制备出晶格参数为9.382和6.964的CHA B型。而CHA b为9.451和6.962,高温处理使CHA衍射峰更加清晰,结晶度提高到97.87%。C-O键的出现和CHA的衍射峰证实了取代碳酸盐羟基磷灰石。
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引用次数: 0
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Industrial and Engineering Chemistry
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