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Computational Benchmark Study in Spatio-Temporal Statistics With a Hands-On Guide to Optimise R 计算基准研究在时空统计与实践指南优化R
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-06-28 DOI: 10.1002/env.70017
Lorenzo Tedesco, Jacopo Rodeschini, Philipp Otto

This study provides a comprehensive evaluation of the computational performance of R, MATLAB, Python, and Julia for spatial and spatio-temporal modelling, focusing on high-dimensional datasets typical in geospatial statistical analysis. We benchmark each language across key tasks, including matrix manipulations and transformations, iterative programming routines, and Input/Output processes, all of which are critical in environmetrics. The results demonstrate that MATLAB excels in matrix-based computations, while Julia consistently delivers competitive performance across a wide range of tasks, establishing itself as a robust, open-source alternative. Python, when combined with libraries like NumPy, shows strength in specific numerical operations, offering versatility for general-purpose programming. R, despite its slower default performance in raw computations, proves to be highly adaptable; by linking to optimized libraries like OpenBLAS or MKL and integrating C++ with packages like Rcpp, R achieves significant performance gains, becoming competitive with the other languages. This study also provides practical guidance for researchers to optimize R for geospatial data processing, offering insights to support the selection of the most suitable language for specific modelling requirements.

本研究对R、MATLAB、Python和Julia在空间和时空建模中的计算性能进行了综合评估,重点关注地理空间统计分析中典型的高维数据集。我们在关键任务上对每种语言进行基准测试,包括矩阵操作和转换、迭代编程例程和输入/输出过程,所有这些都是环境度量的关键。结果表明MATLAB在基于矩阵的计算方面表现出色,而Julia在广泛的任务中始终提供具有竞争力的性能,将自己建立为一个强大的开源替代方案。Python与NumPy等库结合使用时,在特定的数值运算中显示出强大的能力,为通用编程提供了多功能性。尽管R在原始计算中的默认性能较慢,但事实证明它具有很高的适应性;通过链接到像OpenBLAS或MKL这样的优化库,并将c++与Rcpp这样的包集成,R实现了显著的性能提升,与其他语言竞争。本研究还为研究人员优化R用于地理空间数据处理提供了实践指导,为支持选择最适合特定建模要求的语言提供了见解。
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引用次数: 0
Does Wind Affect the Orientation of Vegetation Stripes? A Copula-Based Mixture Model for Axial and Circular Data 风会影响植被条纹的走向吗?基于copula的轴向和圆向数据混合模型
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-06-23 DOI: 10.1002/env.70021
Marco Mingione, Francesco Lagona, Priyanka Nagar, Francois von Holtzhausen, Andriette Bekker, Janine Schoombie, Peter C. le Roux

Motivated by a case study of vegetation patterns, we introduce a mixture model with concomitant variables to examine the association between the orientation of vegetation stripes and wind direction. The proposal relies on a novel copula-based bivariate distribution for mixed axial and circular observations and provides a parsimonious and computationally tractable approach to examine the dependence of two environmental variables observed in a complex manifold. The findings suggest that dominant winds shape the orientation of vegetation stripes through a mechanism of neighboring plants providing wind shelter to downwind individuals.

本文以植被模式为例,引入了一个带伴随变量的混合模型来研究植被条纹方向与风向之间的关系。该建议依赖于一种新的基于copula的二元分布,用于混合轴向和圆形观测,并提供了一种简洁和计算易于处理的方法来检查在复杂流形中观测到的两个环境变量的依赖性。研究结果表明,优势风通过邻近植物为下风个体提供遮风挡雨的机制来塑造植被条纹的方向。
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引用次数: 0
Detecting Changes in Space-Varying Parameters of Local Poisson Point Processes 局部泊松点过程空间变参数变化的检测
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-06-23 DOI: 10.1002/env.70022
Nicoletta D'Angelo

Recent advances in local models for point processes have highlighted the need for flexible methodologies to account for the spatial heterogeneity of external covariates influencing process intensity. In this work, we introduce tessellated spatial regression, a novel framework that extends segmented regression models to spatial point processes, with the aim of detecting abrupt changes in the effect of external covariates on the process intensity. Our approach consists of two main steps. First, we apply a spatial segmentation algorithm to geographically weighted regression estimates, generating different tessellations that partition the study area into regions where model parameters can be assumed constant. Next, we fit log-linear Poisson models in which covariates interact with the tessellations, enabling region-specific parameter estimation and classical inferential procedures, such as hypothesis testing on regression coefficients. Unlike geographically weighted regression, our approach allows for discrete changes in regression coefficients, making it possible to capture abrupt spatial variations in the effect of real-valued spatial covariates. Furthermore, the method naturally addresses the problem of locating and quantifying the number of detected spatial changes. We validate our methodology through simulation studies and applications to two examples where a model with region-wise parameters seems appropriate and to an environmental dataset of earthquake occurrences in Greece.

点过程局部模型的最新进展突出表明,需要灵活的方法来解释影响过程强度的外部协变量的空间异质性。在这项工作中,我们引入了细分空间回归,这是一种将分段回归模型扩展到空间点过程的新框架,目的是检测外部协变量对过程强度影响的突变。我们的方法包括两个主要步骤。首先,我们将空间分割算法应用于地理加权回归估计,生成不同的细分,将研究区域划分为模型参数可以假设为常数的区域。接下来,我们拟合对数线性泊松模型,其中协变量与镶嵌相互作用,实现特定区域参数估计和经典推理程序,如回归系数的假设检验。与地理加权回归不同,我们的方法允许回归系数的离散变化,从而有可能捕捉实值空间协变量影响下的突然空间变化。此外,该方法自然地解决了定位和量化检测到的空间变化数量的问题。我们通过模拟研究和两个例子的应用来验证我们的方法,其中具有区域明智参数的模型似乎是合适的,以及希腊地震发生的环境数据集。
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引用次数: 0
Novel Approach for Hierarchical Family Selection of an Ambient Air Pollutant Mixture With Application to Childhood Asthma 一种环境空气污染物混合物分层族选择的新方法及其在儿童哮喘中的应用
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-06-19 DOI: 10.1002/env.70020
Christoffer Sejling, Andreas Kryger Jensen, Jiawei Zhang, Steffen Loft, Zorana Jovanovic Andersen, Jørgen Brandt, Leslie Thomas Stayner, Marie Pedersen, Esben Budtz-Jørgensen

Long-term exposure to ambient air pollution has previously been associated with childhood asthma, but endeavors have focused on single and pairwise pollutant models. We introduce a novel framework for selection of effect drivers from an environmental mixture, which is based on an entropy rank agreement measure. We apply the method in a nationwide study, relating prenatal exposure to ambient air pollution to asthma incidence in Danish children aged 0–19 years that are born from 1998 to 2016. Also, we estimate effects through population-wide G-estimation contrasts. We conclude that being exposed to the observed levels of ambient air pollution in contrast to the hypothetical case of the minimum of the observed subject-specific exposure levels and the 2.5% quantile levels is associated with relative risk increases that exceed 30% and absolute risk differences that exceed 2 percentage points across Danish municipalities. For selection we discover that SO42$$ {}_4^{2-} $$ and primary organic aerosols appear the most important predictors of asthma amongst the included ambient air pollutants and that these are both associated with a risk increase. The developed methodology is a promising approach to handling an environmental mixture of exposures in statistical analyses, which allows for discovery of important drivers of associations.

长期暴露于环境空气污染中与儿童哮喘有关,但努力集中在单一和成对污染物模型上。我们引入了一种基于熵秩一致性度量的新框架,用于从环境混合物中选择效应驱动因素。我们将该方法应用于一项全国性研究,将1998年至2016年出生的丹麦0-19岁儿童产前暴露于环境空气污染与哮喘发病率之间的关系联系起来。此外,我们通过人口范围内的g估计对比来估计影响。我们得出的结论是,暴露于观察到的环境空气污染水平与观察到的受试者特定暴露水平的最小假设情况和2.5相比% quantile levels is associated with relative risk increases that exceed 30% and absolute risk differences that exceed 2 percentage points across Danish municipalities. For selection we discover that SO   4 2 − $$ {}_4^{2-} $$ and primary organic aerosols appear the most important predictors of asthma amongst the included ambient air pollutants and that these are both associated with a risk increase. The developed methodology is a promising approach to handling an environmental mixture of exposures in statistical analyses, which allows for discovery of important drivers of associations.
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引用次数: 0
Stratified, Spatially Balanced Cluster Sampling for Cost-Efficient Environmental Surveys 成本效益环境调查的分层、空间平衡聚类抽样
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-06-03 DOI: 10.1002/env.70019
Juha Heikkinen, Helena M. Henttonen, Matti Katila, Sakari Tuominen

Large-scale environmental surveys relying on intensive fieldwork are expensive, but survey sampling methodology offers several options to improve their cost-efficiency. For example, sites selected for field assessments can be arranged in clusters to reduce the time spent moving between the sites, and auxiliary data can be utilized to stratify the survey region and sample less important strata less densely. Geographically balanced and well-spread sampling can yield further improvements since the target variables of environmental surveys tend to be spatially autocorrelated. A combination of these ideas was illustrated and evaluated in the context of a national forest inventory, and alternative methods of spatially balanced sampling were compared. The main findings were that (i) both the local pivotal method and the generalized random-tessellation stratified design guaranteed a clearly better spatial regularity than systematic sampling when applied to fragmented regions resulting from stratification and (ii) they also ensured better global balance in unstratified sampling. In our case study, where stratification and sample allocation were based on high-quality auxiliary data, stratified sampling was clearly more efficient than unstratified for the primary survey target parameter. However, our results also illustrate that highly nonproportional sample allocation can be dangerous in a multi-purpose survey.

大规模的环境调查依赖于密集的实地工作是昂贵的,但调查抽样方法提供了几种选择,以提高其成本效益。例如,选择用于实地评估的地点可以进行集群安排,以减少在地点之间移动所花费的时间,并且可以利用辅助数据对调查区域进行分层,并对密度较低的不重要地层进行取样。由于环境调查的目标变量往往是空间自相关的,因此地理平衡和分布良好的采样可以产生进一步的改进。在国家森林清查的背景下,对这些想法的组合进行了说明和评价,并比较了空间平衡采样的替代方法。主要发现是:(i)当应用于分层导致的碎片化区域时,局部枢纽方法和广义随机镶嵌分层设计都保证了比系统抽样明显更好的空间规律性;(ii)它们也确保了非分层抽样中更好的全局平衡。在我们的案例研究中,分层和样本分配是基于高质量的辅助数据,对于主要调查目标参数,分层抽样显然比不分层抽样更有效。然而,我们的结果也表明,高度非比例的样本分配在多目的调查中可能是危险的。
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引用次数: 0
Learning From Limited Temporal Data: Dynamically Sparse Historical Functional Linear Models With Applications to Earth Science 从有限时间数据中学习:动态稀疏历史函数线性模型及其在地球科学中的应用
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-05-15 DOI: 10.1002/env.70018
Joseph Janssen, Shizhe Meng, Asad Haris, Stefan Schrunner, Jiguo Cao, William J. Welch, Nadja Kunz, Ali A. Ameli

Scientists and statisticians often seek to understand the complex relationships that connect two time-varying variables. Recent work on sparse functional historical linear models confirms that they are promising as a tool for obtaining complex and interpretable inferences, but several notable limitations exist. Most importantly, previous works have imposed sparsity on the historical coefficient function, but have not allowed the sparsity, hence lag, to vary with time. We simplify the framework of sparse functional historical linear models by using a rectangular coefficient structure along with Whittaker smoothing, then reduce the assumptions of the previous frameworks by estimating the dynamic time lag from a hierarchical coefficient structure. We motivate our study by aiming to extract the physical rainfall–runoff processes hidden within hydrological data. We show the promise and accuracy of our method using eight simulation studies, further justified by two real sets of hydrological data.

科学家和统计学家经常试图理解连接两个时变变量的复杂关系。最近对稀疏功能历史线性模型的研究证实,它们有望成为获得复杂和可解释推论的工具,但存在一些明显的局限性。最重要的是,以前的工作对历史系数函数施加了稀疏性,但没有允许稀疏性随时间变化,因此滞后。采用矩形系数结构和Whittaker平滑对稀疏函数历史线性模型的框架进行了简化,然后利用层次系数结构估计动态时滞,减少了之前框架的假设。我们通过旨在提取隐藏在水文数据中的物理降雨径流过程来激励我们的研究。我们通过八个模拟研究证明了我们的方法的前景和准确性,并通过两组真实的水文数据进一步证明了这一点。
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引用次数: 0
On Tail Structural Change in U.S. Climate Data 论美国气候数据的尾部结构变化
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-05-12 DOI: 10.1002/env.70016
Hanjun Lu, Alan P. Ker

While many studies on climate have focused on location shifts, none have specifically tested whether lower or upper tails of the climate data generating process have structurally changed over time. This manuscript applies a new test that can detect either distributional or tail structural change to various annual and daily U.S. climate measures. Notably, we find both distributional and tail structural change and, quite interestingly, tend to observe greater evidence in one tail versus the other for most climate measures. We also find the presence of multiple breaks. Our results imply that climate modeling, and specifically climate-crop yield modeling, should account for significant and asymmetric changes in climate distributions and not only location shifts.

虽然许多关于气候的研究都集中在地点变化上,但没有一个研究专门测试过气候数据生成过程的下尾或上尾是否随时间发生了结构性变化。本文应用了一种新的测试,可以检测各种年度和每日美国气候测量的分布或尾部结构变化。值得注意的是,我们发现分布和尾部结构都发生了变化,而且非常有趣的是,对于大多数气候测量,我们倾向于在一个尾部观察到更多的证据。我们还发现了多个断裂的存在。我们的研究结果表明,气候模型,特别是气候-作物产量模型,应该考虑到气候分布的显著和不对称变化,而不仅仅是地理位置的变化。
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引用次数: 0
Evaluation of ETAS and STEP Forecasting Models for California Seismicity Using Point Process Residuals 利用点过程残差评价加州地震活动性的ETAS和STEP预测模型
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-04-24 DOI: 10.1002/env.70014
Joshua Ward, Maximilian Werner, William Savran, Frederic Schoenberg

Variants of the Epidemic-Type Aftershock Sequence (ETAS) and Short-Term Earthquake Probabilities (STEP) models have been used for earthquake forecasting and are entered as forecast models in the purely prospective Collaboratory Study for Earthquake Predictability (CSEP) experiment. Previous analyses have suggested the ETAS model offered the best forecast skill for the first several years of CSEP. Here, we evaluate the prospective forecasting ability of the ETAS and STEP one-day forecast models for California from 2013 to 2017, using super-thinned residuals and Voronoi residuals. We find very comparable performance of the two models, with slightly superior performance of the STEP model compared to ETAS according to most metrics.

流行型余震序列(ETAS)和短期地震概率(STEP)模型的变体已用于地震预报,并作为预测模型输入到纯前瞻性地震可预测性合作研究(CSEP)实验中。以前的分析表明,ETAS模式对CSEP的前几年提供了最好的预测技能。本文利用超细残差和Voronoi残差,对2013 - 2017年加利福尼亚州ETAS和STEP一日预报模型的预测能力进行了评价。我们发现两种模型的性能非常相似,根据大多数指标,STEP模型的性能略优于ETAS。
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引用次数: 0
Comparative Analysis of Bootstrap Techniques for Confidence Interval Estimation in Spatial Covariance Parameters With Large Spatial Data 大数据空间协方差参数置信区间估计的自举方法比较分析
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-04-15 DOI: 10.1002/env.70015
Zih-Bing Chen, Hao-Yun Huang, Cheng-Xin Yang

Inconsistent estimation issues in the Matérn covariance function pose significant challenges to constructing confidence intervals using traditional methods. This paper addresses these challenges by employing the bootstrap method and comparing two straightforward approaches: the percentile bootstrap (PB) and the reverse percentile interval (RPI). We assess their efficacy through coverage rates and interval scores, focusing on accuracy and breadth. Theoretically, we prove that PB outperforms RPI, a claim substantiated by simulation experiments showing its superior coverage accuracy and interval scores. Moreover, the simulation results show strongly interdependent phenomena between parameters. Accordingly, by exploring the micro-ergodic parameter's impact, the study provides insights into these findings' underlying factors, particularly relevant for large spatial datasets. In the empirical study, our approach exhibits greater reliability and effectiveness in confidence interval estimation for large datasets with uniformly and non-uniformly distributed locations, as compared to several other methods. Furthermore, we applied the method to sea surface temperature data, demonstrating its strong applicability for analysis. This study provides theoretical insight and practical guidance for constructing confidence intervals, particularly in mitigating inconsistent estimation issues, especially in the context of the Matérn covariance function.

mat协方差函数的不一致估计问题对传统方法构造置信区间提出了重大挑战。本文通过采用自举方法解决了这些挑战,并比较了两种直接的方法:百分位自举(PB)和反向百分位区间(RPI)。我们通过覆盖率和间隔分数来评估其有效性,重点关注准确性和广度。从理论上讲,我们证明了PB优于RPI,这一说法得到了仿真实验的证实,表明PB具有优越的覆盖精度和区间分数。此外,仿真结果显示参数之间存在强烈的相互依赖现象。因此,通过探索微观遍历参数的影响,该研究提供了对这些发现的潜在因素的见解,特别是与大型空间数据集相关的因素。在实证研究中,与其他几种方法相比,我们的方法在具有均匀和非均匀分布位置的大型数据集的置信区间估计中显示出更高的可靠性和有效性。此外,我们还将该方法应用于海表面温度数据,证明了该方法具有较强的分析适用性。本研究为构建置信区间提供了理论见解和实践指导,特别是在减轻不一致估计问题方面,特别是在mat协方差函数的背景下。
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引用次数: 0
Simple Yet Effective: A Comparative Study of Statistical Models for Yearly Hurricane Forecasting 简单而有效:年度飓风预报统计模型的比较研究
IF 1.5 3区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-04-02 DOI: 10.1002/env.70009
Pietro Colombo, Raffaele Mattera, Philipp Otto

In this article, we study the problem of forecasting the next year's number of Atlantic hurricanes, which is relevant in many fields of applications such as land-use planning, hazard mitigation, reinsurance and long-term weather derivative market. Considering a set of well-known predictors, we compare the forecasting accuracy of both machine learning and classical statistical models, showing that the latter may be more adequate than the first. Quantile regression models, which are adopted for the first time for forecasting hurricane numbers, provide the best results. Moreover, we construct a new index showing good properties in anticipating the direction of the future number of hurricanes. We consider different evaluation metrics based on both magnitude forecasting errors and directional accuracy.

在本文中,我们研究了预测下一年大西洋飓风数量的问题,该问题与许多应用领域相关,如土地利用规划、减灾、再保险和长期天气衍生品市场。考虑到一组众所周知的预测因子,我们比较了机器学习模型和经典统计模型的预测准确性,结果表明后者可能比前者更充分。首次用于预测飓风数量的定量回归模型取得了最佳结果。此外,我们还构建了一个新的指数,该指数在预测未来飓风数量方向方面表现出良好的特性。我们考虑了基于预测误差大小和方向准确性的不同评价指标。
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引用次数: 0
期刊
Environmetrics
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