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Three-lattice metapopulation model: Connecting corridor between patches may be harmful due to “hub effect” 三格元种群模型:由于 "枢纽效应",斑块之间的连接走廊可能是有害的
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 DOI: 10.1016/j.ecocom.2024.101090
Nariyuki Nakagiri , Hiroki Yokoi , Ayako Morishita , Kei-ichi Tainaka

Many authors have reported the risk of habitat fragmentation and the importance of connecting corridors between subpopulations (patches). However, we report that the connection of corridors may be harmful to species conservation. The paper deals with the birth and death processes of a single species living in a network composed of three patches. The disturbance due to a changing environment is assumed to affect only one patch. Two types of metapopulation models are applied. One is the lattice simulation model where we set a lattice as a patch. The other is based on metapopulation theory, which utilizes reaction-migration equations. The lattice simulation reveals that the connecting corridor between patches may be disadvantageous; the complete graph or a network with fully connected corridors is found not to be optimal for species conservation. Similar results are indicated by the application of metapopulation theory. We discuss the relationship between the risk of corridor construction and the effect of the hub patch.

许多学者都报告了栖息地破碎化的风险以及亚种群(斑块)之间连接走廊的重要性。然而,我们的报告指出,走廊的连接可能对物种保护有害。本文论述了生活在由三个斑块组成的网络中的单一物种的出生和死亡过程。假设环境变化引起的干扰只影响一个斑块。本文应用了两种元种群模型。一种是晶格模拟模型,我们将一个晶格设置为一个斑块。另一种是基于元种群理论,利用反应-迁移方程。格网模拟显示,斑块之间的连接走廊可能是不利的;完整的图或具有完全连接走廊的网络并不是物种保护的最佳选择。元种群理论的应用也显示了类似的结果。我们讨论了走廊建设风险与中心斑块效应之间的关系。
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引用次数: 0
An individual-based movement model for contacts between mule deer (Odocoileus hemionus) 基于个体的骡鹿(Odocoileus hemionus)接触运动模型
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-27 DOI: 10.1016/j.ecocom.2024.101082
Kelsey Gritter , Maria Dobbin , Evelyn Merrill , Mark Lewis

Contacts between individuals are key for the spread of infectious disease. Although essential to understanding disease spread, contact rates are difficult to predict, based simply on population demographics in wildlife populations, because contact rates depend upon environmental features as well as the nature of social interactions within and between groups of individuals. We developed a detailed, behaviorally structured, individual-based model (IBM) in Netlogo to simulate contacts between- and within-groups of individual mule deer (Odocoileus hemionus), a species particularly susceptible to chronic wasting disease. The model tracks contacts (defined as two individuals coming within five meters of one another), recorded as between- or within-group depending on the social group membership of the two individuals (dyad). We parameterized the model with data from mule deer with global positioning systems (GPS) collars in east-central Alberta, Canada. Individuals move according to habitat preferences, home range attraction, and grouping behaviours. Animals were tracked at two-hour time steps and were modelled as selecting locations relative to preferred resources based on sex-specific integrated step-selection functions (iSSFs) with steps biased toward a home range centroid. Total within-group contacts increased with group size and were sensitive to changes in movement cohesion of the group and movement persistence, particularly movement cohesion. Total between-group contacts were sensitive only to the number of groups. We compared model predictions for where the locations of deer contacts occurred against an existing statistical model for the relative contact probabilities (RCP) on the same landscape (Dobbin et al. 2023). Predicted locations of deer contacts generally were consistent with higher predicted RCP values. When disease transmission is a function of contact rate, the model can be used to assess the interaction between model components (e.g., movement rates, grouping rules, home ranges, animal densities) and the spatial distribution of key natural and artificial resources that may attract deer and potentially increase disease spread.

个体之间的接触是传染病传播的关键。虽然接触率对了解疾病传播至关重要,但仅凭野生动物种群的人口统计很难预测接触率,因为接触率取决于环境特征以及个体群体内部和之间的社会互动性质。我们在 Netlogo 中开发了一个详细的、行为结构化的、基于个体的模型(IBM),用于模拟骡鹿(Odocoileus hemionus)个体群体之间和群体内部的接触,骡鹿是一种特别容易感染慢性消耗性疾病的物种。该模型跟踪接触(定义为两个个体相距五米以内),根据两个个体(dyad)的社会群体成员身份记录为群体间或群体内接触。我们利用加拿大艾伯塔省中东部带有全球定位系统(GPS)项圈的骡鹿的数据对模型进行了参数化。骡鹿个体根据对栖息地的偏好、家园范围的吸引力和群居行为进行移动。以两小时的时间步长对动物进行追踪,并根据性别特异性综合步长选择函数(iSSF)模拟动物选择相对于首选资源的位置,步长偏向于家域中心点。群内接触总数随群的大小而增加,并对群的运动凝聚力和运动持久性的变化,特别是运动凝聚力的变化敏感。群间接触总数只对群的数量敏感。我们将模型预测的鹿接触地点与现有的同一地貌相对接触概率(RCP)统计模型进行了比较(Dobbin 等,2023 年)。预测的鹿接触地点通常与较高的预测 RCP 值一致。当疾病传播是接触率的函数时,该模型可用于评估模型组成部分(如移动率、分组规则、家园范围、动物密度)与可能吸引鹿并可能增加疾病传播的关键自然和人工资源的空间分布之间的相互作用。
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引用次数: 0
Evolving division of labor in a response threshold model 反应阈值模型中不断演变的分工
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-26 DOI: 10.1016/j.ecocom.2024.101083
José F. Fontanari , Viviane M. de Oliveira , Paulo R.A. Campos

The response threshold model explains the emergence of division of labor (i.e., task specialization) in an unstructured population by assuming that the individuals have different propensities to work on different tasks. The incentive to attend to a particular task increases when the task is left unattended and decreases when individuals work on it. Here we derive mean-field equations for the stimulus dynamics and show that they exhibit complex attractors through period-doubling bifurcation cascades when the noise disrupting the thresholds is small. In addition, we show how the fixed threshold can be set to ensure specialization in both the transient and equilibrium regimes of the stimulus dynamics. However, a complete explanation of the emergence of division of labor requires that we address the question of where the threshold variation comes from, starting from a homogeneous population. We then study a structured population scenario, where the population is divided into a large number of independent groups of equal size, and the fitness of a group is proportional to the weighted mean work performed on the tasks during a fixed period of time. Using a winner-take-all strategy to model group competition and assuming an initial homogeneous metapopulation, we find that a substantial fraction of workers specialize in each task, without the need to penalize task switching.

反应阈值模型通过假设个体对不同任务具有不同的工作倾向,来解释非结构化群体中分工(即任务专业化)的出现。当某项任务被闲置时,个体关注该任务的积极性会增加,而当个体从事该任务时,关注该任务的积极性会降低。在此,我们推导出了刺激动态的均场方程,并证明当干扰阈值的噪声较小时,它们会通过周期加倍的分岔级联表现出复杂的吸引子。此外,我们还展示了如何设置固定阈值,以确保在刺激动态的瞬态和平衡态下都能实现特化。然而,要完整解释分工的出现,我们必须从同质种群出发,解决阈值变化从何而来的问题。我们随后研究了一种结构化种群情景,即种群被划分为大量规模相等的独立群体,群体的适应性与固定时间内完成任务的加权平均工作量成正比。我们采用赢者通吃的策略来模拟群体竞争,并假设最初的元种群是同质的,结果发现有相当一部分工人专门从事每项任务,而无需对任务转换进行惩罚。
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引用次数: 0
Selection of movement rules to simulate species dispersal in a mosaic landscape model 选择运动规则以模拟镶嵌景观模型中的物种扩散
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-15 DOI: 10.1016/j.ecocom.2024.101081
Susannah Gold, Simon Croft, Richard Budgey, James Aegerter

Dispersal is an ecological process central to population dynamics, describing one of the most important movement behaviours between populations and across landscapes. In spatial population models for terrestrial vertebrates, capturing and portraying plausible dispersal behaviour is of particular importance when considering the spread of disease or invasive species. The distribution of distances travelled by dispersers, or the dispersal kernel, is typically highly skewed, with most individuals remaining close to their origin but some travelling substantially further. Using mechanistic models to simulate individual dispersal behaviour, the dispersal kernel can be generated as an emergent property. Through stepwise simulation of the entire movement path, models can also account for the influence of the local environment, and contacts during the dispersal event which may spread disease. In this study, we explore a range of simple rules to emulate individual dispersal behaviour within a mosaic model generated using irregular geometry. Movement rules illustrate a limited range of behavioural assumptions and when applied across these simple synthetic landscapes generated a wide range of emergent kernels. We establish that naturalistic kernels can emerge when simulating dispersal across irregular mosaic landscapes. Given the variability in dispersal distances observed within species, our results highlight the importance of considering landscape heterogeneity and individual-level variation in movement, with simpler rules approximating random walks providing less plausible emergent kernels. As a case study, we demonstrate how rule sets can be selected by comparison to an empirical kernel for a study species (red fox; Vulpes vulpes). These results provide a foundation for the selection of movement rules to represent dispersal in spatial agent-based models, however, we also emphasise the need to corroborate rules against the behaviour of specific species and within chosen landscapes to avoid the potential for these rules to bias predictions.

扩散是种群动态的一个核心生态过程,是种群之间和跨地貌的最重要的移动行为之一。在陆生脊椎动物的空间种群模型中,当考虑疾病或入侵物种的传播时,捕捉和描述可信的扩散行为尤为重要。散布者所走距离的分布或散布核通常是高度倾斜的,大多数个体会留在其原产地附近,但也有一些个体会走得更远。利用机理模型模拟个体的扩散行为,可以将扩散核作为一种新兴属性生成。通过逐步模拟整个运动路径,模型还能解释当地环境的影响,以及扩散过程中可能传播疾病的接触。在这项研究中,我们探索了一系列简单的规则,以模拟使用不规则几何生成的镶嵌模型中的个体扩散行为。运动规则说明了有限范围内的行为假设,当应用于这些简单的合成景观时,产生了广泛的新兴内核。我们发现,在模拟不规则镶嵌景观的扩散时,可以出现自然的核心。鉴于在物种内部观察到的分散距离的差异性,我们的结果突出了考虑地貌异质性和个体水平的运动变化的重要性,而近似于随机漫步的简单规则所提供的新兴内核的可信度较低。作为案例研究,我们展示了如何通过与研究物种(赤狐)的经验内核进行比较来选择规则集。这些结果为在基于空间代理的模型中选择代表散布的运动规则提供了基础,但是,我们也强调有必要根据特定物种的行为和所选景观对规则进行确证,以避免这些规则可能导致预测偏差。
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引用次数: 0
Who notices Gymnophiona? Google Trends data reveal interesting trends for recent amphibian species 谁会注意到 Gymnophiona?谷歌趋势数据揭示了近期两栖动物物种的有趣趋势
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-09 DOI: 10.1016/j.ecocom.2024.101080
Branden Holmes , Janine M. Ziermann , Artur Strzelecki , Steffen Springer , Michael Zieger

Gymnophiona (caecilians) are inconspicuous, wormlike amphibians that are often hidden from human sight due to their aquatic or fossorial lifestyles. While Google Trends data have been widely used within conservation biology to provide information about the relative interest in species, and therefore of their flagship-making potential, as well as to identify current taxonomic biases. This study aimed to evaluate public interest in amphibians, with a particular focus on caecilians, and possible taxonomic biases of and within the class Amphibia. Google Trends data from amphibians, reptiles (sauropsids, excluding aves), and fishes (chondrichthyans + osteichthyans, excluding tetrapods) were analyzed and compared. In addition, a framework for a representation index and web representation index is presented. The introduced relative representation index was able to confirm taxonomic bias concerning Amphibia. Differences in worldwide public interest could also be evaluated within amphibians, indicating severe underrepresentation in public interest for caecilians.

裸盖虫是一种不起眼的蠕虫状两栖动物,由于其水生或穴居生活方式,它们通常不为人类所见。谷歌趋势数据已被广泛应用于保护生物学领域,以提供有关物种相对兴趣的信息,从而了解物种的旗舰潜力,并识别当前的分类偏差。本研究旨在评估公众对两栖动物的兴趣,尤其是对盲鳗的兴趣,以及对两栖类可能存在的分类偏差。研究分析并比较了两栖类、爬行类(蜥形类,不包括鸟类)和鱼类(软骨鱼类+骨鱼类,不包括四足类)的谷歌趋势数据。此外,还提出了代表性指数和网络代表性指数的框架。引入的相对代表性指数能够确认两栖类的分类偏差。在两栖类中,也可以评估世界范围内公众兴趣的差异,这表明公众对无尾类的兴趣严重不足。
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引用次数: 0
Triggering the tragedy: The simulated effects of alternative fisher goals on marine fisheries and fisheries policy 引发悲剧:替代性渔业目标对海洋渔业和渔业政策的模拟影响
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-01 DOI: 10.1016/j.ecocom.2023.101070
Ashleigh Arton , Ernesto Carrella , Jens Koed Madsen , Richard M. Bailey

Avoiding the ‘tragedy of the commons’ remains a challenge in many natural resource systems, and open-access fisheries are well-studied in this context. Here, an agent-based model is used to investigate how variation in fisher goals change what policies best solve the tragedy. When fishers’ goals are easily satisfied, commons problems are avoided without management interventions, but the imposition of quota limits triggers the tragedy. Thus, commons problems are not necessarily inevitable and sophisticated governance institutions or regulations are not always required to manage them; the same policy may prevent the tragedy or trigger it, depending on the fisher's goals. Given that it is difficult to ascertain them, by using a simulation model we can find patterns that help us identify fishers' goals and incorporate these patterns within our management procedure. This can assist adaptive management to better incorporate behaviour into policy evaluation.

在许多自然资源系统中,避免 "公地悲剧 "仍是一项挑战,而开放式渔业在这方面得到了深入研究。在此,我们使用一个基于代理的模型来研究渔民目标的变化如何改变最能解决 "公地悲剧 "的政策。当渔民的目标容易满足时,无需管理干预就能避免公域问题,但实施配额限制则会引发悲剧。因此,公域问题并不一定不可避免,也并不一定需要复杂的治理机构或法规来管理;同样的政策可能防止悲剧发生,也可能引发悲剧,这取决于渔民的目标。鉴于很难确定这些目标,通过使用模拟模型,我们可以发现一些规律,帮助我们确定渔民的目标,并将这些规律纳入我们的管理程序中。这有助于适应性管理,更好地将行为纳入政策评估。
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引用次数: 0
Eco-epidemiological predator–prey models: A review of models in ordinary differential equations 生态流行病学捕食者-猎物模型:常微分方程模型综述
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-26 DOI: 10.1016/j.ecocom.2023.101071
Enith A. Gómez-Hernández , Felipe N. Moreno-Gómez , Fernando Córdova-Lepe , Moisés Bravo-Gaete , Nelson A. Velásquez , Hugo A. Benítez

Eco-epidemiology integrates ecological and epidemiological approaches to analyze both the impact of infectious diseases on ecological communities and how interspecific interactions can alter disease dynamics. With the aim of extracting general principles of eco-epidemiological dynamics, this article presents a review of the literature focusing on predator–prey type ordinary differential equation models with disease in one of the species. We included 81 articles that were categorized according to prey growth function, disease transmission function, epidemiological model compartments, and predator functional response. The findings reveal that these models share a common mathematical lineage, which in turn facilitates the construction of models based on the general assumptions identified in this study. The most prevalent models tend to assume logistic prey growth, a bilinear incidence rate for disease transmission, an epidemiological model of the Susceptible–Infected type, and a Holling Type II predator functional response.

生态流行病学综合了生态学和流行病学的方法,既分析传染病对生态群落的影响,也分析种间相互作用如何改变疾病的动态。为了提取生态流行病学动态的一般原理,本文对文献进行了综述,重点是捕食者-猎物类型的常微分方程模型,其中一个物种存在疾病。我们收录了 81 篇文章,按照猎物生长函数、疾病传播函数、流行病学模型区间和捕食者功能响应进行了分类。研究结果表明,这些模型有着共同的数学脉络,这反过来又促进了基于本研究确定的一般假设的模型构建。最普遍的模型倾向于假定猎物的增长是逻辑的、疾病传播的发病率是双线性的、流行病学模型是易感-被感染类型的、捕食者的功能反应是霍林 II 型的。
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引用次数: 0
Complexity and biocomplexity: Overview of some historical aspects and philosophical basis 复杂性和生物复杂性:一些历史问题和哲学基础概述
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-19 DOI: 10.1016/j.ecocom.2023.101072
Srdjan Kesić

Complexity has radically changed human understanding of the world environment and continues challenging our best scientific theories. In a rapidly changing research landscape, historical and philosophical insights into Complexity can heighten awareness of the proper theoretical perspectives scientists should adopt to advance the study of biocomplexity, including ecological complexity. The present work aims to deepen this awareness and disclose how researchers should generally approach, scientifically and philosophically, the question of what Complexity is, which is of great importance not only to the scientific community but also far beyond. First, this article reviews some critical historical turning points that led to Complexity. Second, the paper discusses philosophical-scientific approaches to the emergence as one of the most critical features of complex systems. The critical ideas behind attempts to understand the generators of complexity in nature are then presented, focusing on the living world. Finally, the review focuses on understanding the ecosystem- and organism-oriented perspectives of biocomplexity. We conclude that the genuine problem of the origin of complexity theory and biocomplexity will continue to inspire generations of researchers to search for new, more comprehensive mathematical and computational frameworks to explain biological hierarchies in order to further advance the scientific understanding of life.

复杂性从根本上改变了人类对世界环境的认识,并不断挑战着我们最好的科学理论。在瞬息万变的研究环境中,对复杂性的历史和哲学洞察可以提高科学家对正确理论视角的认识,从而推进包括生态复杂性在内的生物复杂性研究。本文旨在深化这种认识,并揭示研究人员应如何从科学和哲学角度来看待 "什么是复杂性 "这一不仅对科学界而且对其他领域都具有重要意义的问题。首先,本文回顾了导致复杂性产生的一些关键历史转折点。其次,本文讨论了作为复杂系统最关键特征之一的 "涌现 "的哲学-科学方法。然后,本文以生命世界为重点,介绍了试图理解自然界复杂性产生因素背后的重要思想。最后,本综述侧重于从生态系统和生物体的角度来理解生物复杂性。我们的结论是,复杂性理论和生物复杂性起源的真正问题将继续激励几代研究人员寻找新的、更全面的数学和计算框架来解释生物层次结构,从而进一步推动对生命的科学理解。
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引用次数: 0
Geographical boundaries and historical explanations of within-scale resilience 尺度内弹性的地理边界和历史解释
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2023-11-25 DOI: 10.1016/j.ecocom.2023.101062
Colby J. Clark

Historically, the idea that ecosystems possess geographical boundaries has been dismissed as both naïve and impractical. But advancements in remote sensing have led to the reliable detection of spatial regimes that seem to provide early warning of a potential critical transition. This invites a reexamination of the role geographical boundaries play in explanations of the resilience concept. Despite apparent ontological imprecision, defining the boundaries of an ecosystem geographically, instead of dynamically (i.e., as collections of feedback mechanisms), dilates explanations of resilience to improve understanding of the history of contingent causal dynamics that culminate in emergent self-organization at a single scale. To demonstrate the utility of geographical boundaries, three related discussions connect spatial resilience theory with elements of island biogeography theory: (1) the function of stepping-stones as ecological filters, (2) mobile links as examples of the rescue effect, and (3) the way assembly rules and successive equilibria map onto the forward loop of the adaptive cycle heuristic.

从历史上看,生态系统具有地理边界的想法被认为是naïve和不切实际的。但是,遥感技术的进步使人们能够可靠地探测到空间状况,这些状况似乎为潜在的重大转变提供了早期预警。这就需要重新审视地理边界在解释弹性概念时所起的作用。尽管存在明显的本体论上的不精确,但将生态系统的边界定义为地理上的,而不是动态的(即,作为反馈机制的集合),扩展了对弹性的解释,以提高对偶然因果动力学历史的理解,这些历史最终导致了单一尺度上的紧急自组织。为了证明地理边界的效用,三个相关的讨论将空间弹性理论与岛屿生物地理学理论的要素联系起来:(1)踏脚石作为生态过滤器的功能,(2)移动链接作为拯救效应的例子,以及(3)组合规则和连续平衡映射到自适应循环启发式前向回路的方式。
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引用次数: 0
IF 3.5 3区 环境科学与生态学 Q1 Agricultural and Biological Sciences Pub Date : 2023-10-23 DOI: 10.1016/j.ecocom.2023.101061
Saheed O. Jimoh
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引用次数: 0
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Ecological Complexity
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