The evolution of cancer therapies has dramatically improved patient survival but has also revealed a critical challenge: the long-term genotoxic effects that can lead to secondary primary malignancies (SPMs). This review synthesizes current knowledge on how diverse treatment modalities, including chemotherapy, radiotherapy, targeted agents, and immunotherapies, induce DNA damage in normal tissues. It details the distinct mechanisms of genotoxicity, from the direct DNA lesions caused by cytotoxic drugs and ionizing radiation to the indirect damage mediated by oxidative stress and inflammation from newer therapies. The article identifies a range of multifactorial risk factors for SPMs, encompassing patient-specific variables such as age, genetic predisposition, and lifestyle, as well as therapy-related factors such as dose, duration, and combination regimens. It then evaluates the progression of monitoring methods, from traditional cytogenetic assays to advanced molecular and multi-omics biomarkers, highlighting their potential to predict individual susceptibility and inform risk stratification. By exploring pharmacogenomics and its role in genotype-guided dosing, the review proposes a framework for personalized prevention strategies. These strategies include risk-adapted regimens, prophylactic interventions, and the use of AI-driven predictive models. Ultimately, this comprehensive analysis underscores the urgent need to advance personalized prevention in oncology to balance therapeutic efficacy with long-term genomic safety for cancer survivors.
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