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Gene Variants of Vitamin D Receptor (TaqI T > C (rs731236) and BsmI G > A (rs1544410) in Urolithiasis 尿石症中维生素 D 受体的基因变异(TaqI T > C (rs731236) 和 BsmI G > A (rs1544410)
Pub Date : 2024-07-03 DOI: 10.5812/jkums-143931
A. Seyedzadeh, Z. Rahimi, M. Tohidi, Nargece Soraya
Background: Urolithiasis is the most prevalent uronephrologic disorder caused by genetic, environmental factors, and metabolic defects. Objectives: The present study aimed to find a possible association between the vitamin D receptor (VDR) TaqI and the BsmI gene polymorphisms in relation to the serum levels of calcium (Ca) and vitamin D and the risk of urolithiasis. Methods: This case-control study was conducted on 68 children with urolithiasis and 67 healthy controls for the VDR gene polymorphisms using the polymerase chain reaction-restriction length polymorphism method. Results: The frequency of TaqI C allele was 36% in patients compared to 32.1% in controls (P = 0.49). A significantly higher frequency of the TaqI CC genotype was found among patients in the age group > 5 to 10 years. No significant difference was detected in the frequency of the BsmI A allele between patients (41.9%) and controls (42.5%, P = 0.91). However, a significantly lower frequency of the BsmI AA genotype was detected compared to those patients with Ca levels of > 10.8 mg/dL among patients with Ca levels of ≤ 10.8 mg/dL. Conclusions: Based on the results, a lack of an association between the VDR TaqI and BsmI polymorphisms with the risk of urolithiasis among children from Western Iran. However, a higher frequency of the TaqI CC genotype was found in the age group > 5 to 10 years. In addition, lower levels of Ca in patients were related to a significantly lower frequency of the BsmI AA genotype. The VDR gene BsmI polymorphism might affect the calcium level and the calcium metabolism in urolithiasis.
背景:尿路结石是由遗传、环境因素和代谢缺陷引起的最常见的泌尿生殖系统疾病。研究目的本研究旨在发现维生素 D 受体(VDR)TaqI 和 BsmI 基因多态性与血清钙(Ca)和维生素 D 水平及尿路结石风险之间可能存在的关联。研究方法本病例对照研究采用聚合酶链式反应-限制长度多态性方法,对 68 名尿路结石患儿和 67 名健康对照者进行了 VDR 基因多态性检测。结果显示患者的 TaqI C 等位基因频率为 36%,而对照组为 32.1%(P = 0.49)。在年龄大于 5 至 10 岁的患者中,TaqI CC 基因型的频率明显较高。患者(41.9%)和对照组(42.5%,P = 0.91)的 BsmI A 等位基因频率没有明显差异。然而,与血钙值大于 10.8 mg/dL 的患者相比,血钙值小于 10.8 mg/dL 的患者的 BsmI AA 基因型频率明显较低。结论根据研究结果,伊朗西部儿童的 VDR TaqI 和 BsmI 多态性与罹患尿石症的风险没有关联。不过,在 5 至 10 岁年龄组中,TaqI CC 基因型的频率较高。此外,患者体内钙含量较低与 BsmI AA 基因型频率明显较低有关。VDR基因BsmI多态性可能会影响尿石症患者的血钙水平和钙代谢。
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引用次数: 0
Prevalence of Antibiotic Resistance Genes in Bacterial Isolates in Iran: A Systematic Review 伊朗细菌分离物中抗生素耐药基因的流行情况:系统综述
Pub Date : 2024-07-02 DOI: 10.5812/jkums-139147
MohammadHosein Zamanian, Armin Naghipour, Zainab Mohseni Afshar, Negar Pourtaieb, Zahra Naghibifar
Context: The widespread use of biocides containing quaternary ammonium compounds (QACs) in medical centers has led to resistant strains of microorganisms. This study aimed to evaluate the frequency of genes resistant to antiseptics in Iranian bacterial isolates. Methods: The present study was conducted as a systematic review. The keywords in the titles or abstracts of articles published in Persian and English were monitored. The search was performed in databases without a time limit. Results: The results showed a total of 975 bacterial isolates. The most common disinfectant-resistant genes in gram-positive isolates were QacAB genes, with an average of 28.48; SMR gene, with an average of 19.8; and qacE and qacEΔ1 genes, with an average of 45 in gram-negative isolates. Gram-negative isolates containing qacE and qacEΔ1 genes were mainly detected in patients hospitalized in intensive care, internal diseases, and infectious diseases wards and from trachea and urine samples. Conclusions: The unique conditions of the intensive care units and the use of invasive tools such as urinary catheters were the leading causes of infection with resistant pathogens. In addition, diversity in infection control measures like the type, amount, and concentration of disinfectants used in different hospital departments were other reasons for resistance to antiseptics in medical environments. Indiscriminate use of antibiotics caused microbial resistance in the same way antibiotics did not affect many microbial diseases, and arbitrary use caused the highest microbial resistance.
背景:医疗中心广泛使用含有季铵盐化合物(QAC)的杀菌剂,导致微生物产生耐药菌株。本研究旨在评估伊朗细菌分离物中耐抗菌剂基因的频率。方法:本研究以系统综述的形式进行。对以波斯文和英文发表的文章标题或摘要中的关键词进行了监测。在没有时间限制的数据库中进行搜索。结果显示结果显示共分离出 975 种细菌。在革兰氏阳性分离物中,最常见的耐消毒剂基因是 QacAB 基因,平均为 28.48 个;SMR 基因,平均为 19.8 个;qacE 和 qacEΔ1 基因,在革兰氏阴性分离物中平均为 45 个。含有 qacE 和 qacEΔ1 基因的革兰氏阴性分离株主要在重症监护室、内科病房和传染病房的住院病人以及气管和尿液样本中检出。结论重症监护病房的特殊条件和导尿管等侵入性工具的使用是导致耐药病原体感染的主要原因。此外,感染控制措施的多样性,如不同医院部门使用的消毒剂的种类、用量和浓度,也是导致医疗环境对消毒剂产生耐药性的原因。滥用抗生素会导致微生物产生耐药性,而抗生素对许多微生物疾病并无影响,任意使用抗生素导致的微生物耐药性最高。
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引用次数: 0
Assessment of Occupational Hazards and Health Status 职业危害和健康状况评估
Pub Date : 2024-07-01 DOI: 10.5812/jkums-144054
S. Olarewaju, A. Sokan-Adeaga, Fasanmi Akinlolu, Olufunke Julianah Ogidan, Micheal Ayodeji Sokan-Adeaga, Joy Stephen Amusan
Background: Sawmilling exposed workers to diverse occupational mishaps and subsequent health complications. Investigating workplace risk and health status can help mitigate morbidness and death among this group. Objectives: This study aimed to evaluate the occupational hazards and health status of sawmill workers in Akure, Nigeria. Methods: This cross-sectional descriptive survey was conducted on 304 sawmill workers in Akure metropolis selected via multi-stage sampling methodology. Data were collected using a pre-tested, standardized questionnaire. In addition, the body mass index (BMI), blood pressure (mmHg), and respiratory function parameters (spirometry) were measured. Descriptive and inferential statistics (chi-square) were used to evaluate and summarize the data, with a significance level of P < 0.05. Results: The respondents' average age was 42.0 ± 2.8 years. The common reported workplace hazards included noise 273 (89.8%), manual lifting of objects 221 (72.7%), heat 192 (63.2%), and wood dust 192 (63.2%), while common reported injuries were bruises 292 (96.1%), hearing impairment 281 (92.4%), electric shock 250 (82.2%), and fainting attack 232 (76.3%). The common prevalent ailments suffered by respondents in the last month were cough 158 (52.0%), phlegm production 149 (49.0%), chest pain 63 (20.7%), skin problems 100 (32.9%), and eyes irritation 111 (36.5%). The anthropometric measurement showed that most 272 (89.5%) sawmill workers are overweight and obese. Spirometry measurements revealed that one-third of the respondents had a forced expiratory ratio (FER) measurement below 70.00% and an abnormal respiratory rate. The bivariate analysis showed a significant correlation between the respondents' self-reported prior workplace injury, knowledge of workplace dangers, and sociodemographic characteristics (job category and educational level). Conclusions: The results showed that the respondents suffered from impaired respiratory function related to workplace hazard exposure and the non-usage of protective devices during operational activities. In addition, the majority are at risk of developing diverse cardiovascular and respiratory diseases due to workplace exposures.
背景:锯木厂的工人面临着各种职业事故和随之而来的健康并发症。调查工作场所的风险和健康状况有助于减轻这一群体的发病率和死亡率。研究目的本研究旨在评估尼日利亚阿库雷锯木厂工人的职业危害和健康状况。研究方法这项横断面描述性调查通过多阶段抽样方法选取了阿库雷市的 304 名锯木厂工人。数据收集使用了一份预先测试过的标准化问卷。此外,还测量了体重指数(BMI)、血压(mmHg)和呼吸功能参数(肺活量)。采用描述性和推论性统计(卡方)对数据进行评估和总结,显著性水平为 P <0.05。结果受访者的平均年龄为(42.0 ± 2.8)岁。报告的常见工作场所危害包括噪音 273(89.8%)、人工搬运物体 221(72.7%)、高温 192(63.2%)和木屑 192(63.2%),报告的常见伤害包括瘀伤 292(96.1%)、听力损伤 281(92.4%)、电击 250(82.2%)和晕厥 232(76.3%)。受访者最近一个月常见的疾病是咳嗽 158(52.0%)、咳痰 149(49.0%)、胸痛 63(20.7%)、皮肤病 100(32.9%)和眼睛不适 111(36.5%)。人体测量结果显示,大多数 272 名(89.5%)锯木厂工人超重和肥胖。肺活量测量显示,三分之一的受访者的用力呼气比(FER)低于 70.00%,呼吸频率异常。双变量分析表明,受访者自述的工伤经历、对工作场所危险的了解以及社会人口特征(工作类别和教育水平)之间存在显著相关性。结论结果表明,受访者的呼吸功能受损与暴露于工作场所危险和在操作活动中未使用保护装置有关。此外,由于工作场所的暴露,大多数人面临罹患各种心血管和呼吸系统疾病的风险。
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引用次数: 0
Antibiotic Susceptibility Pattern of Nosocomial and Community-Acquired Pseudomonas aeruginosa in Isfahan: A Prospective Multicenter Study 伊斯法罕医院和社区获得性铜绿假单胞菌的抗生素敏感性模式:一项前瞻性多中心研究
Pub Date : 2024-02-27 DOI: 10.5812/jkums-140315
Sayed Nassereddin Mostafavi Esfahani, S. Rostami, Zahra Amini
Background: Pseudomonas aeruginosa is a ubiquitous bacillus responsible for severe infections in inpatients, especially nosocomial and intensive care unit (ICU) infections. Objectives: This study aimed to determine the antibiotic susceptibility of clinical isolates from inpatients in three referral hospitals in Isfahan, Iran. Methods: Standard tests identified the organism and antibiotic susceptibility testing. Stratification was performed by place of infection (community, hospital), admission ward (ICU, non-ICU), and age group (< 20 versus > 20 years). Results: P. aeruginosa showed high susceptibility to colistin (100%) and amikacin (81.8%) followed by tobramycin (69.2%), ciprofloxacin (68.5%), meropenem (67.2%), cefepime (65.7%), ceftazidime (64.3%), and imipenem (63.3%). Community-acquired strains were significantly more susceptible to meropenem (81.6%), ciprofloxacin (77.1%), cefepime (77.1%), imipenem (74.3%), and ceftazidime (72.2%) than nosocomial strains. Non-ICU isolates were more susceptible to carbapenems. P. aeruginosa isolates had higher antibiotic susceptibility in less than 20 years. Conclusions: Based on the results, a combination of colistin and amikacin would be appropriate for the empiric treatment of suspected P. aeruginosa infections in severe cases, nosocomial infections, or patients admitted to ICU. Ceftazidime, cefepime, ciprofloxacin, meropenem, or imipenem would be suitable for mild to moderate infections, especially in community-acquired infections.
背景:铜绿假单胞菌(Pseudomonas aeruginosa)是一种无处不在的杆菌,可导致住院病人的严重感染,尤其是院内感染和重症监护室(ICU)感染。研究目的本研究旨在确定伊朗伊斯法罕三家转诊医院住院患者临床分离菌株的抗生素敏感性。方法:通过标准测试确定病原体和抗生素的敏感性:通过标准检测确定病原体并进行抗生素药敏试验。根据感染地点(社区、医院)、入院病房(重症监护室、非重症监护室)和年龄组(小于 20 岁和大于 20 岁)进行分层。结果显示铜绿假单胞菌对可乐定(100%)和阿米卡星(81.8%)的敏感性较高,其次是妥布霉素(69.2%)、环丙沙星(68.5%)、美罗培南(67.2%)、头孢吡肟(65.7%)、头孢他啶(64.3%)和亚胺培南(63.3%)。社区获得菌株对美罗培南(81.6%)、环丙沙星(77.1%)、头孢吡肟(77.1%)、亚胺培南(74.3%)和头孢他啶(72.2%)的敏感性明显高于非社区菌株。非重症监护室分离菌株对碳青霉烯类更敏感。20年以下的铜绿假单胞菌分离株对抗生素的敏感性更高。结论:根据研究结果,对于重症病例、院内感染或入住重症监护室的疑似铜绿假单胞菌感染患者,经验性治疗宜联合使用可乐定和阿米卡星。头孢他啶、头孢吡肟、环丙沙星、美罗培南或亚胺培南适用于轻度至中度感染,尤其是社区获得性感染。
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引用次数: 0
Factors Affecting Sleep Problems Among Young People During COVID-19 Pandemic: A Report from Western Iran 影响 COVID-19 大流行期间年轻人睡眠问题的因素:来自伊朗西部的报告
Pub Date : 2024-02-26 DOI: 10.5812/jkums-141148
Habibolah Khazaie, M. Rostampour, L. Rezaie, Saeid Komasi, A. Zakiei
Background: Sleep disorders are a public health problem, and sleep studies among ethnic groups are few. Therefore, this study aimed to evaluate sleep quality and sleep problems among Iranian people. Methods: This cross-sectional study was conducted on 4748 young people aged 18 to 35 (average: 27.58 years) in western Iran during the COVID-19 pandemic. In addition, 60.4% of the participants were men. The data were collected using the Pittsburgh Sleep Quality Inventory (PSQI), the Insomnia Severity Index (ISI), and the Demographic Information Questionnaire and analyzed with SPSS software version 22. Results: About 44.4% of the participants had unfavorable sleep quality and had sleep problems. Besides, the mean score of sleep problems (measured with PSQI) reported by the participants was 5.68±2.67. The logistic regression analysis showed that the participant’s age, education, marital status, occupation, drug abuse, alcohol consumption, use of mobile phones and the internet, and a history of previous sleep problems accounted for sleep problems during the COVID-19 pandemic. Conclusions: Based on the results, there was a high prevalence of sleep problems among Iranian young people during the COVID-19 pandemic.
背景:睡眠障碍是一个公共健康问题,而针对少数民族的睡眠研究却很少。因此,本研究旨在评估伊朗人的睡眠质量和睡眠问题。研究方法这项横断面研究在 COVID-19 大流行期间对伊朗西部 4748 名 18 至 35 岁(平均 27.58 岁)的年轻人进行了调查。此外,60.4% 的参与者为男性。研究使用匹兹堡睡眠质量量表(PSQI)、失眠严重程度指数(ISI)和人口信息问卷收集数据,并使用 SPSS 软件 22 版进行分析。结果约 44.4% 的参与者睡眠质量不佳并存在睡眠问题。此外,参与者报告的睡眠问题(用 PSQI 测量)平均得分为 5.68±2.67。逻辑回归分析表明,参与者的年龄、教育程度、婚姻状况、职业、滥用药物、饮酒、使用手机和互联网以及以往的睡眠问题史是导致 COVID-19 大流行期间出现睡眠问题的原因。结论根据研究结果,在 COVID-19 大流行期间,伊朗年轻人的睡眠问题发生率很高。
{"title":"Factors Affecting Sleep Problems Among Young People During COVID-19 Pandemic: A Report from Western Iran","authors":"Habibolah Khazaie, M. Rostampour, L. Rezaie, Saeid Komasi, A. Zakiei","doi":"10.5812/jkums-141148","DOIUrl":"https://doi.org/10.5812/jkums-141148","url":null,"abstract":"Background: Sleep disorders are a public health problem, and sleep studies among ethnic groups are few. Therefore, this study aimed to evaluate sleep quality and sleep problems among Iranian people. Methods: This cross-sectional study was conducted on 4748 young people aged 18 to 35 (average: 27.58 years) in western Iran during the COVID-19 pandemic. In addition, 60.4% of the participants were men. The data were collected using the Pittsburgh Sleep Quality Inventory (PSQI), the Insomnia Severity Index (ISI), and the Demographic Information Questionnaire and analyzed with SPSS software version 22. Results: About 44.4% of the participants had unfavorable sleep quality and had sleep problems. Besides, the mean score of sleep problems (measured with PSQI) reported by the participants was 5.68±2.67. The logistic regression analysis showed that the participant’s age, education, marital status, occupation, drug abuse, alcohol consumption, use of mobile phones and the internet, and a history of previous sleep problems accounted for sleep problems during the COVID-19 pandemic. Conclusions: Based on the results, there was a high prevalence of sleep problems among Iranian young people during the COVID-19 pandemic.","PeriodicalId":507382,"journal":{"name":"Journal of Kermanshah University of Medical Sciences","volume":"8 18","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140430298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluating the Motivation to Accept/Not Accept the COVID-19 Vaccination and its Related Factors in Health Care Workers: A Cross-Sectional Study 评估医护人员接受/不接受 COVID-19 疫苗接种的动机及其相关因素:横断面研究
Pub Date : 2024-02-25 DOI: 10.5812/jkums-138880
Alireza Janbakhsh, Armin Naghipour, Zahra Naghibifar, Abbass Moghimbeigi, Marjan Balvandi
Background: Vaccination is one of the most cost-effective ways to prevent the spread of COVID-19. Objectives: The present study aimed to determine the prevalence of vaccine acceptance, side effects, and factors encouraging/disincentivizing vaccination among healthcare workers. Methods: A descriptive-analytical cross-sectional study was conducted on 315 health workers at Imam Reza Hospital, Kermanshah, Iran, in 2021. The samples were selected through a simple random sampling method. The data collection tool was a researcher-made questionnaire, and the collected data were analyzed in STATA-17 software. Results: The vaccine acceptance rate was 84.1% (n = 265), and the vaccine refusal rate was 15.9% (n = 50). The most injected vaccines were Sinopharm (n = 112, 42.3%) and Sputnik (n = 88, 33.2%), respectively. The most common side effects after vaccine injection were fatigue (34.8%, n=39) and myalgia (14.3%, n = 16). Being in a high-risk place (n = 199, 75.2%) and fear of contracting COVID-19 (n = 88, 33.5%) were the most important reasons for encouraging vaccination. About 36.7% (n = 18) of blood clotting, 26.5% (n = 14) cardiac arrest, short-term safety, and distrust were the essential factors for not accepting the vaccine. Conclusions: Based on the results, the prevalence of vaccine acceptance among health workers was high. However, a small percentage did not want to accept the vaccine due to negative news and a lack of trust in the vaccine. Therefore, it is necessary to establish strong educational and awareness-raising associations that transmit knowledge of the COVID-19 vaccine by focusing on false information.
背景:接种疫苗是预防 COVID-19 传播的最具成本效益的方法之一。研究目的本研究旨在确定医护人员对疫苗的接受程度、副作用以及鼓励/抑制疫苗接种的因素。方法2021 年,对伊朗克尔曼沙阿伊玛目礼萨医院的 315 名医护人员进行了描述性分析横断面研究。样本通过简单随机抽样法选出。数据收集工具为研究人员自制的调查问卷,收集到的数据使用 STATA-17 软件进行分析。结果疫苗接受率为 84.1%(n = 265),疫苗拒绝率为 15.9%(n = 50)。注射最多的疫苗分别是国药(112 人,42.3%)和斯巴尼克(88 人,33.2%)。注射疫苗后最常见的副作用是疲劳(34.8%,人数=39)和肌痛(14.3%,人数=16)。身处高风险场所(199 人,75.2%)和害怕感染 COVID-19(88 人,33.5%)是鼓励接种疫苗的最重要原因。约 36.7%(18 人)担心血液凝固、26.5%(14 人)担心心脏骤停、短期安全和不信任是不接受疫苗接种的重要因素。结论根据调查结果,医务工作者接受疫苗的比例较高。然而,也有一小部分人因负面消息和对疫苗缺乏信任而不愿接受疫苗。因此,有必要建立强大的教育和宣传协会,通过关注虚假信息来传播 COVID-19 疫苗知识。
{"title":"Evaluating the Motivation to Accept/Not Accept the COVID-19 Vaccination and its Related Factors in Health Care Workers: A Cross-Sectional Study","authors":"Alireza Janbakhsh, Armin Naghipour, Zahra Naghibifar, Abbass Moghimbeigi, Marjan Balvandi","doi":"10.5812/jkums-138880","DOIUrl":"https://doi.org/10.5812/jkums-138880","url":null,"abstract":"Background: Vaccination is one of the most cost-effective ways to prevent the spread of COVID-19. Objectives: The present study aimed to determine the prevalence of vaccine acceptance, side effects, and factors encouraging/disincentivizing vaccination among healthcare workers. Methods: A descriptive-analytical cross-sectional study was conducted on 315 health workers at Imam Reza Hospital, Kermanshah, Iran, in 2021. The samples were selected through a simple random sampling method. The data collection tool was a researcher-made questionnaire, and the collected data were analyzed in STATA-17 software. Results: The vaccine acceptance rate was 84.1% (n = 265), and the vaccine refusal rate was 15.9% (n = 50). The most injected vaccines were Sinopharm (n = 112, 42.3%) and Sputnik (n = 88, 33.2%), respectively. The most common side effects after vaccine injection were fatigue (34.8%, n=39) and myalgia (14.3%, n = 16). Being in a high-risk place (n = 199, 75.2%) and fear of contracting COVID-19 (n = 88, 33.5%) were the most important reasons for encouraging vaccination. About 36.7% (n = 18) of blood clotting, 26.5% (n = 14) cardiac arrest, short-term safety, and distrust were the essential factors for not accepting the vaccine. Conclusions: Based on the results, the prevalence of vaccine acceptance among health workers was high. However, a small percentage did not want to accept the vaccine due to negative news and a lack of trust in the vaccine. Therefore, it is necessary to establish strong educational and awareness-raising associations that transmit knowledge of the COVID-19 vaccine by focusing on false information.","PeriodicalId":507382,"journal":{"name":"Journal of Kermanshah University of Medical Sciences","volume":"8 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140433426","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In vitro and in silico Evaluation of Antibacterial Effects in Some Oxadiazole Compounds against Escherichia coli O157: H7 某些噁二唑化合物对大肠杆菌 O157: H7 的抗菌作用的体外和硅学评估
Pub Date : 2024-02-24 DOI: 10.5812/jkums-139825
Yasin SarveAhrabi, Sarina Nejati Khoei
Background: Escherichia coli O157:H7 is a significant pathogen responsible for causing diarrhea in humans. Oxadiazoles are known for their diverse range of biological activities. Objectives: This study aimed to assess the anti-E. coli O157:H7 effects of 1, 3, and 4-oxadiazole derivatives. Methods: Compounds containing an oxadiazole central core were synthesized anew. In vitro assays, including agar well diffusion, minimum inhibitory concentration, and minimum bactericidal concentration, were conducted. The molecular structures of the oxadiazole derivatives were optimized using the mm2 methodology with Chem3D v20.1.1.125 software. The ligand's inhibitory potential against the active sites of stx-1 and stx-2 was assessed using Autodock Vina software. The results were analyzed using Discovery Studio v16.1.0 software. Results: The findings indicated that compound C ((2E)-3-(3,4-difluorophenyl)-2-(5-(hydroxy(pyridin-2-yl)meth yl)-1,3,4-oxadiazol-2-yl)-N-methylacrylimidic acid) exhibited more potent anti-E. coli O157:H7 effects compared to other compounds and the control sample. Furthermore, in silico results demonstrated that compound C exhibited inhibitory effects against stx-1 and stx-2 by forming hydrogen bonds for inhibition. Conclusions: Compounds featuring a fluorophenyl structure with a 1, 3, and 4-oxadiazole core have the potential to serve as anti-E. coli O157:H7 agents for the development of therapeutic drugs.
背景:大肠杆菌 O157:H7 是导致人类腹泻的重要病原体。噁二唑具有多种生物活性。研究目的本研究旨在评估 1、3 和 4-噁二唑衍生物的抗大肠杆菌 O157:H7 作用。研究方法重新合成了含有恶二唑中心核的化合物。进行了体外试验,包括琼脂井扩散、最低抑菌浓度和最低杀菌浓度。利用 Chem3D v20.1.1.125 软件,采用 mm2 方法优化了噁二唑衍生物的分子结构。使用 Autodock Vina 软件评估了配体对 stx-1 和 stx-2 活性位点的抑制潜力。使用 Discovery Studio v16.1.0 软件对结果进行分析。结果:研究结果表明,与其他化合物和对照样品相比,化合物 C((2E)-3-(3,4-二氟苯基)-2-(5-(羟基(吡啶-2-基)甲基)-1,3,4-恶二唑-2-基)-N-甲基丙烯酰亚胺酸)具有更强的抗大肠杆菌 O157:H7 作用。此外,硅学研究结果表明,化合物 C 通过形成氢键对 stx-1 和 stx-2 具有抑制作用。结论:以 1、3 和 4-噁二唑为核心的氟苯基结构化合物有望作为抗大肠杆菌 O157:H7 的药物,用于开发治疗药物。
{"title":"In vitro and in silico Evaluation of Antibacterial Effects in Some Oxadiazole Compounds against Escherichia coli O157: H7","authors":"Yasin SarveAhrabi, Sarina Nejati Khoei","doi":"10.5812/jkums-139825","DOIUrl":"https://doi.org/10.5812/jkums-139825","url":null,"abstract":"Background: Escherichia coli O157:H7 is a significant pathogen responsible for causing diarrhea in humans. Oxadiazoles are known for their diverse range of biological activities. Objectives: This study aimed to assess the anti-E. coli O157:H7 effects of 1, 3, and 4-oxadiazole derivatives. Methods: Compounds containing an oxadiazole central core were synthesized anew. In vitro assays, including agar well diffusion, minimum inhibitory concentration, and minimum bactericidal concentration, were conducted. The molecular structures of the oxadiazole derivatives were optimized using the mm2 methodology with Chem3D v20.1.1.125 software. The ligand's inhibitory potential against the active sites of stx-1 and stx-2 was assessed using Autodock Vina software. The results were analyzed using Discovery Studio v16.1.0 software. Results: The findings indicated that compound C ((2E)-3-(3,4-difluorophenyl)-2-(5-(hydroxy(pyridin-2-yl)meth yl)-1,3,4-oxadiazol-2-yl)-N-methylacrylimidic acid) exhibited more potent anti-E. coli O157:H7 effects compared to other compounds and the control sample. Furthermore, in silico results demonstrated that compound C exhibited inhibitory effects against stx-1 and stx-2 by forming hydrogen bonds for inhibition. Conclusions: Compounds featuring a fluorophenyl structure with a 1, 3, and 4-oxadiazole core have the potential to serve as anti-E. coli O157:H7 agents for the development of therapeutic drugs.","PeriodicalId":507382,"journal":{"name":"Journal of Kermanshah University of Medical Sciences","volume":"40 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140435043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic Variation and Phylogenetic Analysis of Influenza A/H3N2 Hemagglutinin Gene in Shiraz, Southern Iran: Implications for Influenza Control and Vaccine Development 伊朗南部设拉子地区甲型 H3N2 流感血凝素基因的遗传变异和系统发育分析:对流感控制和疫苗开发的影响
Pub Date : 2024-02-21 DOI: 10.5812/jkums-139001
Fahimeh Edalat, Neda Pirbonyeh, J. Sarvari, Nasir Arefinia, M. Kadivar, Omid Rashidi, A. Moattari
Background: Variation in the hemagglutinin (HA) of influenza A/H3N2 can affect antigenicity and virulence, potentially leading to the emergence of vaccine escape variants and antigenic shift viruses. This study aimed to evaluate the genetic variation of the HA gene to enhance global influenza virus surveillance. Objectives: The primary objectives of this research included molecular characterization and phylogenetic analysis of the influenza A/H3N2 HA gene. Therefore, this research aimed to contribute valuable insights to influenza surveillance efforts on a global scale by identifying the variants associated with vaccine escape and antigenic shift. Methods: RNA extraction was performed on 300 nasopharyngeal swab samples from patients with influenza-like illness using a commercial kit. The presence of influenza A/H3N2 was determined using qRT-PCR. Subsequently, positive samples underwent HA gene amplification through RT-PCR using the Sanger method. Variability in HA immunological sites was compared with reference sequences, and genotype/subtype was determined. Alignment and phylogenetic analyses were conducted to construct a tree utilizing an optimal nucleotide substitution model Results: Among the 300 samples, 22 (7.33%) tested positive for influenza A/H3N2, with a male distribution of 13 cases. The mean age of the participants was 35 ± 2.40 years. The analysis of antigenic site mutations revealed significant variations (A, B, D, and E) in the HA gene, with major mutations at positions 140 and 186. Noteworthy mutations such as S159Y and the previously undocumented K83R substitution at antigenic site E. Phylogenetic analysis classified the A/H3N2 strain into clades 3C.2a and 3C.3. Conclusions: The identified mutations in the HA gene suggest potential changes in antigenicity, emphasizing their relevance to vaccine development and surveillance strategies. It is recommended that ongoing molecular investigations be conducted for effective influenza control; also, the ongoing need to monitor influenza viruses is suggested to be highlighted. This research provides valuable insights necessary for maintaining efficient influenza control measures globally.
背景:甲型 H3N2 流感病毒血凝素(HA)的变异会影响抗原性和毒力,可能导致疫苗逃逸变种和抗原转变病毒的出现。本研究旨在评估 HA 基因的遗传变异,以加强全球流感病毒监测。目标:本研究的主要目标包括甲型 H3N2 流感 HA 基因的分子特征和系统发育分析。因此,本研究旨在通过确定与疫苗逃逸和抗原转变相关的变异,为全球范围内的流感监测工作提供有价值的见解。研究方法使用商业试剂盒对 300 份流感样疾病患者的鼻咽拭子样本进行 RNA 提取。采用 qRT-PCR 方法确定是否存在 A/H3N2 流感病毒。随后,采用 Sanger 方法通过 RT-PCR 对阳性样本进行 HA 基因扩增。将 HA 免疫位点的变异性与参考序列进行比较,并确定基因型/亚型。结果:在 300 份样本中,22 人(7.33%)的甲型 H3N2 流感检测结果呈阳性,其中 13 例为男性。参与者的平均年龄为 35±2.40 岁。对抗原位点突变的分析表明,HA 基因有明显的变异(A、B、D 和 E),主要突变位于 140 和 186 位。值得注意的突变如 S159Y 和以前未记录的抗原位点 E 的 K83R 取代。系统发生学分析将 A/H3N2 株归入 3C.2a 和 3C.3 支系。结论已发现的 HA 基因突变表明抗原性可能会发生变化,强调了其与疫苗开发和监控策略的相关性。建议持续开展分子研究,以有效控制流感;还建议强调持续监测流感病毒的必要性。这项研究为全球保持有效的流感控制措施提供了宝贵的见解。
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引用次数: 0
Effect of High-Dose Vitamin D on Mortality and Hospital Length of Stay in ICU Patients with COVID-19: A Randomized Clinical Trial 大剂量维生素 D 对重症监护病房 COVID-19 患者死亡率和住院时间的影响:随机临床试验
Pub Date : 2024-02-15 DOI: 10.5812/jkums-140510
MohammadHosein Zamanian, Zohreh Javadfar, Yahay Salimi, Mer Ali Rahimi, Elham Rabieenia, Akram Rahimi
Background: Evidence indicating the effect of vitamin D supplementation on improving the clinical outcomes of COVID-19 is limited. Objectives: This study aimed to examine the effect of high-dose vitamin D on mortality and hospital length of stay in ICU patients with COVID-19. Methods: A single-center, double-blind, placebo-controlled, randomized clinical trial study was conducted on 61 patients with moderate to severe COVID-19 hospitalized in the ICU of Golestan Hospital, Kermanshah, Iran. Participants were randomly divided to receive a single dose of 300 000 IU vitamin D3 intramuscularly (n = 31) or placebo (n = 30). The primary outcomes were the length of hospital stay and in-hospital mortality. Secondary outcomes were the length of stay in the ICU, the number of patients requiring mechanical ventilation, and the serum level of 25-hydroxyvitamin D. Results: Out of 61 randomized patients, 44 patients with a mean age of 53.49 ± 13.2 years, body mass index of 29.80 ± 5.0 kg/m2, and serum vitamin D level of 24.36 ± 4.47 mg/dL were included in the study for primary analysis, of whom 31 (70.5%) cases were men. Median (interquartile range), the length of hospital stay between the vitamin D group (5.0 [6.0 - 11.0] days), placebo group (11.0 [6.0 - 17.0] days) (log-rank P = 0.23; unadjusted hazard ratio [HR] for hospital discharge, 3.4 [95% confidence interval [CI], 0.4 - 28.05]; P = 0.25; adjusted HR, 0.04 [95%CI, 11.52 - 0.0001]; P = 0.27) and mortality (unadjusted odds ratio [OR], 0.63 [95% CI,0.09 - 4.21]; P = 0.63; adjusted OR, 0.46 [95%CI, 0.03 - 6.55]; P = 0.57) showed no significant difference between the two groups before and after the adjustment of confounding factors. No significant difference was observed between the two groups regarding the need for mechanical ventilation (unadjusted OR for intubation = 2.1 [95% CI, 0.17 - 25.01]; P = 0.55), adjusted OR = 1.16 [95%CI, 0.04 - 27.57]; P = 0.92), and the length of stay in ICUs (log-rank = 2.49, P = 0.114; unadjusted HR for ICU discharge, 6.28 [95%CI, 0.5 - 78.42]; P = 0.15; adjusted HR = 21.48 [95%CI, 0.12 - 3677.48]; P = 0.24). Conclusions: Based on the results, A high dose of vitamin D did not significantly reduce mortality and hospital length of stay in ICU patients with COVID-19.
背景:有关补充维生素 D 对改善 COVID-19 临床疗效的证据有限。研究目的本研究旨在探讨大剂量维生素 D 对 COVID-19 ICU 患者死亡率和住院时间的影响。研究方法在伊朗克尔曼沙阿市戈勒斯坦医院重症监护室住院的 61 名中重度 COVID-19 患者中开展了一项单中心、双盲、安慰剂对照、随机临床试验研究。参与者被随机分为肌肉注射单剂量 300 000 IU 维生素 D3(31 人)或安慰剂(30 人)。主要结果是住院时间和院内死亡率。次要结果是重症监护室的住院时间、需要机械通气的患者人数以及血清中 25- 羟维生素 D 的水平:在 61 名随机患者中,44 名患者的平均年龄为(53.49 ± 13.2)岁,体重指数为(29.80 ± 5.0)kg/m2,血清维生素 D 水平为(24.36 ± 4.47)mg/dL,其中 31 例(70.5%)为男性。维生素 D 组(5.0 [6.0 - 11.0] 天)、安慰剂组(11.0 [6.0 - 17.0] 天)的住院时间中位数(四分位数间距)(对数秩 P = 0.23;未调整出院危险比 [HR],3.4 [95% 置信区间 [CI],0.4 - 28.05];P = 0.25;调整后 HR,0.04 [95%CI,11.52 - 0.0001];P = 0.27)和死亡率(未调整的几率比[OR],0.63 [95% CI,0.09 - 4.21];P = 0.63;调整后的 OR,0.46 [95%CI,0.03 - 6.55];P = 0.57)显示两组在调整混杂因素前后无显著差异。两组在机械通气需求方面无明显差异(未调整插管 OR = 2.1 [95%CI, 0.17 - 25.01]; P = 0.55),调整后 OR = 1.16 [95%CI, 0.04 - 27.57]; P = 0.92),以及在 ICU 的住院时间(对数秩 = 2.49,P = 0.114;ICU 出院的未调整 HR,6.28 [95%CI, 0.5 - 78.42]; P = 0.15;调整 HR = 21.48 [95%CI, 0.12 - 3677.48]; P = 0.24)。结论根据研究结果,大剂量维生素 D 并不能显著降低 COVID-19 ICU 患者的死亡率和住院时间。
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引用次数: 0
Effect of High-Dose Vitamin D on Mortality and Hospital Length of Stay in ICU Patients with COVID-19: A Randomized Clinical Trial 大剂量维生素 D 对重症监护病房 COVID-19 患者死亡率和住院时间的影响:随机临床试验
Pub Date : 2024-02-15 DOI: 10.5812/jkums-140510
MohammadHosein Zamanian, Zohreh Javadfar, Yahay Salimi, Mer Ali Rahimi, Elham Rabieenia, Akram Rahimi
Background: Evidence indicating the effect of vitamin D supplementation on improving the clinical outcomes of COVID-19 is limited. Objectives: This study aimed to examine the effect of high-dose vitamin D on mortality and hospital length of stay in ICU patients with COVID-19. Methods: A single-center, double-blind, placebo-controlled, randomized clinical trial study was conducted on 61 patients with moderate to severe COVID-19 hospitalized in the ICU of Golestan Hospital, Kermanshah, Iran. Participants were randomly divided to receive a single dose of 300 000 IU vitamin D3 intramuscularly (n = 31) or placebo (n = 30). The primary outcomes were the length of hospital stay and in-hospital mortality. Secondary outcomes were the length of stay in the ICU, the number of patients requiring mechanical ventilation, and the serum level of 25-hydroxyvitamin D. Results: Out of 61 randomized patients, 44 patients with a mean age of 53.49 ± 13.2 years, body mass index of 29.80 ± 5.0 kg/m2, and serum vitamin D level of 24.36 ± 4.47 mg/dL were included in the study for primary analysis, of whom 31 (70.5%) cases were men. Median (interquartile range), the length of hospital stay between the vitamin D group (5.0 [6.0 - 11.0] days), placebo group (11.0 [6.0 - 17.0] days) (log-rank P = 0.23; unadjusted hazard ratio [HR] for hospital discharge, 3.4 [95% confidence interval [CI], 0.4 - 28.05]; P = 0.25; adjusted HR, 0.04 [95%CI, 11.52 - 0.0001]; P = 0.27) and mortality (unadjusted odds ratio [OR], 0.63 [95% CI,0.09 - 4.21]; P = 0.63; adjusted OR, 0.46 [95%CI, 0.03 - 6.55]; P = 0.57) showed no significant difference between the two groups before and after the adjustment of confounding factors. No significant difference was observed between the two groups regarding the need for mechanical ventilation (unadjusted OR for intubation = 2.1 [95% CI, 0.17 - 25.01]; P = 0.55), adjusted OR = 1.16 [95%CI, 0.04 - 27.57]; P = 0.92), and the length of stay in ICUs (log-rank = 2.49, P = 0.114; unadjusted HR for ICU discharge, 6.28 [95%CI, 0.5 - 78.42]; P = 0.15; adjusted HR = 21.48 [95%CI, 0.12 - 3677.48]; P = 0.24). Conclusions: Based on the results, A high dose of vitamin D did not significantly reduce mortality and hospital length of stay in ICU patients with COVID-19.
背景:有关补充维生素 D 对改善 COVID-19 临床疗效的证据有限。研究目的本研究旨在探讨大剂量维生素 D 对 COVID-19 ICU 患者死亡率和住院时间的影响。研究方法在伊朗克尔曼沙阿市戈勒斯坦医院重症监护室住院的 61 名中重度 COVID-19 患者中开展了一项单中心、双盲、安慰剂对照、随机临床试验研究。参与者被随机分为肌肉注射单剂量 300 000 IU 维生素 D3(31 人)或安慰剂(30 人)。主要结果是住院时间和院内死亡率。次要结果是重症监护室的住院时间、需要机械通气的患者人数以及血清中 25- 羟维生素 D 的水平:在 61 名随机患者中,44 名患者的平均年龄为(53.49 ± 13.2)岁,体重指数为(29.80 ± 5.0)kg/m2,血清维生素 D 水平为(24.36 ± 4.47)mg/dL,其中 31 例(70.5%)为男性。维生素 D 组(5.0 [6.0 - 11.0] 天)、安慰剂组(11.0 [6.0 - 17.0] 天)的住院时间中位数(四分位数间距)(对数秩 P = 0.23;未调整出院危险比 [HR],3.4 [95% 置信区间 [CI],0.4 - 28.05];P = 0.25;调整后 HR,0.04 [95%CI,11.52 - 0.0001];P = 0.27)和死亡率(未调整的几率比[OR],0.63 [95% CI,0.09 - 4.21];P = 0.63;调整后的 OR,0.46 [95%CI,0.03 - 6.55];P = 0.57)显示两组在调整混杂因素前后无显著差异。两组在机械通气需求方面无明显差异(未调整插管 OR = 2.1 [95%CI, 0.17 - 25.01]; P = 0.55),调整后 OR = 1.16 [95%CI, 0.04 - 27.57]; P = 0.92),以及在 ICU 的住院时间(对数秩 = 2.49,P = 0.114;ICU 出院的未调整 HR,6.28 [95%CI, 0.5 - 78.42]; P = 0.15;调整 HR = 21.48 [95%CI, 0.12 - 3677.48]; P = 0.24)。结论根据研究结果,大剂量维生素 D 并不能显著降低 COVID-19 ICU 患者的死亡率和住院时间。
{"title":"Effect of High-Dose Vitamin D on Mortality and Hospital Length of Stay in ICU Patients with COVID-19: A Randomized Clinical Trial","authors":"MohammadHosein Zamanian, Zohreh Javadfar, Yahay Salimi, Mer Ali Rahimi, Elham Rabieenia, Akram Rahimi","doi":"10.5812/jkums-140510","DOIUrl":"https://doi.org/10.5812/jkums-140510","url":null,"abstract":"Background: Evidence indicating the effect of vitamin D supplementation on improving the clinical outcomes of COVID-19 is limited. Objectives: This study aimed to examine the effect of high-dose vitamin D on mortality and hospital length of stay in ICU patients with COVID-19. Methods: A single-center, double-blind, placebo-controlled, randomized clinical trial study was conducted on 61 patients with moderate to severe COVID-19 hospitalized in the ICU of Golestan Hospital, Kermanshah, Iran. Participants were randomly divided to receive a single dose of 300 000 IU vitamin D3 intramuscularly (n = 31) or placebo (n = 30). The primary outcomes were the length of hospital stay and in-hospital mortality. Secondary outcomes were the length of stay in the ICU, the number of patients requiring mechanical ventilation, and the serum level of 25-hydroxyvitamin D. Results: Out of 61 randomized patients, 44 patients with a mean age of 53.49 ± 13.2 years, body mass index of 29.80 ± 5.0 kg/m2, and serum vitamin D level of 24.36 ± 4.47 mg/dL were included in the study for primary analysis, of whom 31 (70.5%) cases were men. Median (interquartile range), the length of hospital stay between the vitamin D group (5.0 [6.0 - 11.0] days), placebo group (11.0 [6.0 - 17.0] days) (log-rank P = 0.23; unadjusted hazard ratio [HR] for hospital discharge, 3.4 [95% confidence interval [CI], 0.4 - 28.05]; P = 0.25; adjusted HR, 0.04 [95%CI, 11.52 - 0.0001]; P = 0.27) and mortality (unadjusted odds ratio [OR], 0.63 [95% CI,0.09 - 4.21]; P = 0.63; adjusted OR, 0.46 [95%CI, 0.03 - 6.55]; P = 0.57) showed no significant difference between the two groups before and after the adjustment of confounding factors. No significant difference was observed between the two groups regarding the need for mechanical ventilation (unadjusted OR for intubation = 2.1 [95% CI, 0.17 - 25.01]; P = 0.55), adjusted OR = 1.16 [95%CI, 0.04 - 27.57]; P = 0.92), and the length of stay in ICUs (log-rank = 2.49, P = 0.114; unadjusted HR for ICU discharge, 6.28 [95%CI, 0.5 - 78.42]; P = 0.15; adjusted HR = 21.48 [95%CI, 0.12 - 3677.48]; P = 0.24). Conclusions: Based on the results, A high dose of vitamin D did not significantly reduce mortality and hospital length of stay in ICU patients with COVID-19.","PeriodicalId":507382,"journal":{"name":"Journal of Kermanshah University of Medical Sciences","volume":"19 12","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139776566","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of Kermanshah University of Medical Sciences
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