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Boom and bust: the effects of masting on seed predator range dynamics and trophic cascades 繁荣与萧条:抛锚对种子捕食者范围动态和营养级联的影响
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-05-22 DOI: 10.1111/ddi.13861
Michael T. Hallworth, Alexej P. K. Sirén, William V. DeLuca, Timothy R. Duclos, Kent P. McFarland, Jason M. Hill, Christopher C. Rimmer, Toni Lyn Morelli

Aim

Spatiotemporal variation in resource availability is a strong driver of animal distributions. In the northern hardwood and boreal forests of the northeastern United States, tree mast events provide resource pulses that drive the population dynamics of small mammals, including the American red squirrel (Tamiasciurus hudsonicus), a primary songbird nest predator. This study sought to determine whether mast availability ameliorates their abiotic limits, enabling red squirrel elevational distributions to temporarily expand and negatively impact high-elevation songbirds.

Location

Northeastern United States.

Methods

We used two independent datasets to evaluate our hypotheses. First, we fit a dynamic occupancy model using data from camera trap surveys to evaluate red squirrel distributional responses to pulses in the tree mast. We also assessed population responses using systematic auditory surveys analysed with an open-population binomial mixture model. Further, we used modelled red squirrel abundance in nest-survival models to evaluate whether their abundance is correlated with the daily nest survival of three songbird species.

Results

The tree mast provided a critical resource pulse that resulted in a two-fold increase in the annual elevational distribution of red squirrels. The elevational distribution of red squirrels ranged from a minimum of ~450 m (range: 663–1145 m asl) following two consecutive years without a masting event to a maximum of over 1000 m (range: 443–1545 m asl) after a large mast event. The daily nest survival of three songbird species tended to decline with an increase in the abundance of red squirrels.

Main Conclusions

Tree mast is a central biological phenomenon in many temperate and boreal forests. This study reveals how this resource pulse results in range changes in a small mammal that is both a seed and bird predator, as well as prey for many carnivores. Thus, understanding this phenomenon can inform the conservation and management of northern forests, including breeding songbirds.

资源可用性的时空变化是动物分布的强大驱动力。在美国东北部的北方阔叶林和北方针叶林中,树木萌发提供的资源脉冲推动了小型哺乳动物的种群动态,其中包括美国红松鼠(Tamiasciurus hudsonicus),它是鸣鸟巢的主要捕食者。本研究试图确定桅杆的可用性是否会改善它们的非生物限制,从而使红松鼠的海拔分布暂时扩大,并对美国东北部的高海拔鸣禽产生负面影响。首先,我们利用相机陷阱调查的数据拟合了一个动态占用模型,以评估红松鼠的分布对树木桅杆脉冲的反应。我们还利用系统听觉调查评估了种群反应,并使用开放种群二项混合模型进行了分析。此外,我们还在巢存活率模型中使用了红松鼠的丰度模型,以评估红松鼠的丰度是否与三种鸣禽的每日巢存活率相关。树桅提供了一个关键的资源脉冲,导致红松鼠的年海拔分布增加了两倍。红松鼠的海拔分布范围从连续两年无桅杆事件后的最低约 450 米(范围:海拔 663-1145 米)到大桅杆事件后的最高超过 1000 米(范围:海拔 443-1545 米)。随着红松鼠数量的增加,三种鸣禽的每日筑巢存活率呈下降趋势。这项研究揭示了这种资源脉冲如何导致一种小型哺乳动物的活动范围发生变化,这种哺乳动物既是种子和鸟类的捕食者,也是许多食肉动物的猎物。因此,了解这一现象可以为北方森林的保护和管理提供信息,包括繁殖鸣禽。
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引用次数: 0
Deforestation limits evolutionary rescue under climate change in Amazonian lizards 森林砍伐限制了亚马逊蜥蜴在气候变化下的进化救援
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-05-17 DOI: 10.1111/ddi.13860
Josué A. R. Azevedo, Søren Faurby, Guarino R. Colli, Alexandre Antonelli, Fernanda P. Werneck

Aim

The impact of climate change on biodiversity is often analysed under a stable evolutionary perspective focused on whether species can currently tolerate warmer climates. However, species may adapt to changes, and particularly under conditions of low habitat fragmentation, standing adaptive genetic variation can spread across populations tracking changing climates, increasing the potential for evolutionary rescue. Here, our aim is to integrate genomic data, niche modelling and landscape ecology to predict range shifts and the potential for evolutionary rescue.

Location

The megadiverse Amazonian rainforest.

Methods

We use genome–environment association analyses to search for candidate loci under environmental selection, while accounting for neutral genetic variation in a widespread Amazonian whiptail lizard (Teiidae: Kentropyx calcarata). We then model the distribution of individuals with genotypes adapted to different climate conditions. We predict range shifts for each genotype in distinct future climate change scenarios by integrating this information with dispersal constraints based on predicted scenarios of forest cover across Amazonia. The predicted ranges of each genotype were then overlapped to infer the potential for evolutionary rescue.

Results

We find that the potential for evolutionary rescue and, therefore, a smaller degree of range loss buffering extinction risk in the future is considerably high, provided that current forest cover is retained and climate change is not extreme. However, under extreme environmental change scenarios, range loss will be high in central and southern Amazonia, irrespective of the degree of deforestation.

Main Conclusions

Our results suggest that protecting the Amazonian rainforest against further deforestation and mitigating climate change to moderate scenarios until 2070 could foster evolutionary rescue of ectothermic organisms. These actions could prevent substantial biodiversity loss in Amazonia, emphasizing the importance of understanding species adaptability in maintaining biodiversity.

目的 气候变化对生物多样性的影响通常是从稳定进化的角度进行分析的,重点是物种目前是否能够承受较暖的气候。然而,物种可能会适应变化,特别是在栖息地破碎化程度较低的条件下,常备的适应性遗传变异可以在追踪气候变化的种群中传播,从而增加进化拯救的潜力。在这里,我们的目的是整合基因组数据、生态位建模和景观生态学来预测物种分布范围的变化和进化拯救的可能性。方法我们利用基因组-环境关联分析来寻找环境选择下的候选位点,同时考虑亚马逊大范围分布的鞭尾蜥(缇科:Kentropyx calcarata)的中性遗传变异。然后,我们建立了适应不同气候条件的基因型个体分布模型。我们根据亚马孙地区森林覆盖率的预测情景,将这些信息与散布限制因素相结合,预测了每种基因型在不同的未来气候变化情景下的分布范围变化。结果我们发现,如果目前的森林覆盖率得以保持,且气候变化不极端,那么未来进化拯救的潜力相当大,因此,较小程度的范围丧失可以缓冲灭绝风险。主要结论我们的研究结果表明,保护亚马逊雨林,防止进一步砍伐森林,并在 2070 年前将气候变化减缓到中等程度,可以促进外温动物的进化拯救。这些行动可以防止亚马孙地区生物多样性的大量丧失,强调了了解物种适应性对维持生物多样性的重要性。
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引用次数: 0
Dispersal restriction and facilitation in species with differing tolerance to development: A landscape genetics study of native and introduced lizards 对发展具有不同耐受力的物种的传播限制和促进作用:对本地和引进蜥蜴的景观遗传学研究
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-05-16 DOI: 10.1111/ddi.13858
Payton M. Phillips, Kelley E. Langhans, Matthew R. Helmus, Wendy A. M. Jesse, Yann Surget-Groba, Jocelyn E. Behm

Aim

The development of natural habitats into urban land uses has greatly accelerated in the recent past due to human activities. This habitat development disrupts species' natural dispersal processes and can lead to both direct and indirect impacts on dispersal. Whether human activities result in restricted or facilitated dispersal may depend on a species' development tolerance; however, this premise has not been tested. We examined the impact of urbanization and road networks on the dispersal of three lizard species in the context of their development tolerance.

Location

Curaçao.

Methods

To quantify species' development tolerance, we modelled three lizard species abundances at sites based on surrounding landscape development. Using microsatellite genotypes, we conducted individual-based resistance surface analyses and modelled the effect of habitat development on genetic admixture to assess indirect dispersal restriction and facilitation. We explored direct facilitation of dispersal using network analysis of mitochondrial haplotypes.

Results

Phyllodactylus martini, a native gecko species, was the least tolerant of development and experienced indirect dispersal restriction due to roads, according to resistance surface analyses. Anolis lineatus, a native anole species, exhibited a neutral relationship with development. Resistance surfaces and Structure analyses showed that A. lineatus faced indirect dispersal restrictions from roads and developed areas, while mitochondrial haplotype networks suggested they benefited from occasional human-facilitated long-distance dispersal events. Hemidactylus mabouia, an introduced gecko species, was the most tolerant of development, and experienced no dispersal restriction, but mitochondrial haplotypes suggest direct long-distance dispersal facilitation.

Main Conclusions

Our findings highlight development tolerance as a key predictor of dispersal impact for these species and future work should test whether these patterns are upheld in other systems. Understanding how human activities affect species' dispersal will aid in managing introduced species while promoting connectivity for native species navigating dispersal challenges in dynamic landscapes.

近年来,由于人类活动,自然栖息地向城市用地的发展速度大大加快。这种栖息地的开发破坏了物种的自然扩散过程,会对扩散造成直接和间接的影响。人类活动究竟会限制还是促进物种的扩散,可能取决于物种对发展的耐受性,但这一前提尚未得到验证。为了量化物种的发展耐受性,我们根据周围景观的发展情况,模拟了三个蜥蜴物种在不同地点的丰度。利用微卫星基因型,我们进行了基于个体的阻力面分析,并模拟了栖息地发展对遗传混杂的影响,以评估间接扩散限制和促进作用。根据阻力面分析,本地壁虎物种Phyllodactylus martini对开发的耐受性最差,并且由于道路而受到间接扩散限制。Anolis lineatus是一种本地的踝鼹物种,它与发展的关系呈中性。阻力面和结构分析表明,A. lineatus面临着来自道路和发达地区的间接扩散限制,而线粒体单倍型网络则表明它们受益于偶尔发生的人类促成的长距离扩散事件。我们的研究结果突出表明,发展耐受性是预测这些物种扩散影响的一个关键因素,未来的工作应检验这些模式是否在其他系统中得到维持。了解人类活动如何影响物种的扩散将有助于管理引进物种,同时促进本土物种在动态景观中应对扩散挑战时的连通性。
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引用次数: 0
Cover page 封面
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-05-13 DOI: 10.1111/ddi.13741

The cover image relates to the Research Article https://doi.org/10.1111/ddi.13850“Native fish assemblages in natural lakes across Japan: Endemism deterioration lasting centuries” by Dai et al. The big-scaled redfin (Pseudaspius hakonensis), or Ugui in Japanese, a widely found native freshwater fish of Japan, pictured at Lake Biwa Museum. Photo credit: Bingguo Dai.

封面图片与研究文章 https://doi.org/10.1111/ddi.13850 "日本各地天然湖泊中的本地鱼类群落 "有关,该文章由 Dai 等人撰写:Dai 等人在琵琶湖博物馆拍摄的大鳞红鳍鱼(Pseudaspius hakonensis),或日语中的 Ugui,一种在日本广泛发现的本土淡水鱼。图片来源:Bingguo Dai。
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引用次数: 0
Drivers and spatial patterns of avian defaunation in tropical forests 热带森林鸟类失乐园的驱动因素和空间模式
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-05-10 DOI: 10.1111/ddi.13855
Iago Ferreiro‐Arias, Luca Santini, H. S. Sathya Chandra Sagar, Cécile Richard‐Hansen, Eric Guilbert, Pierre‐Michel Forget, Marijke van Kuijk, Andressa B. Scabin, Carlos A. Peres, Eloy Revilla, Ana Benítez‐López
AimWildlife overexploitation, either for food consumption or for the pet trade, is one of the main threats to bird species in tropical forests. Yet, the spatial distribution and intensity of harvesting pressure on tropical birds remain challenging to quantify. Here, we identify the drivers of hunting‐induced declines in bird abundance and quantify the magnitude and the spatial extent of avian defaunation at a pantropical scale.LocationPantropical.MethodsWe compiled 2968 abundance estimates in hunted and non‐hunted sites across the tropics spanning 518 bird species. Using a Bayesian modelling framework, we fitted species' abundance response ratios to a set of drivers of hunting pressure and species traits. Subsequently, we applied our model to quantify the spatial patterns of avian defaunation across tropical forests and to assess avian defaunation across biogeographic realms, and for species captured for the pet trade or for food consumption.ResultsBody mass and its interactions with hunter accessibility and proximity to urban markets were the most important drivers of hunting‐induced bird abundance declines. We estimated a mean abundance reduction of 12% across the tropics for all species, and that 43% of the extent of tropical forests harbour defaunated avian communities. Large‐bodied species and the Indomalayan realm displayed the greatest abundance declines. Further, moderate to high levels of defaunation extended over 24% of the pantropical forest area, with distinct spatial patterns for species captured for the pet trade (Brazil, China and Indonesia) and for food consumption (SE Asia and West Africa).Main ConclusionsOur study emphasizes the role of hunter accessibility and the proximity to urban markets as major drivers of bird abundance declines due to hunting and trapping. We further identified hotspots where overexploitation has detrimental effects on tropical birds, encompassing local extinction events, thus underscoring the urgent need for conservation efforts to address unsustainable exploitation for both subsistence and trade.
目的为食用或宠物交易而过度开发野生动物是热带森林鸟类物种面临的主要威胁之一。然而,热带鸟类面临的捕猎压力的空间分布和强度仍然难以量化。在这里,我们确定了狩猎导致鸟类丰度下降的驱动因素,并量化了泛热带尺度上鸟类失乐园的规模和空间范围。方法我们在热带地区狩猎和非狩猎地点收集了 2968 种丰度估计值,涵盖 518 种鸟类。利用贝叶斯建模框架,我们将物种丰度响应比与一系列捕猎压力驱动因素和物种特征进行了拟合。随后,我们应用我们的模型量化了热带森林中鸟类失乐园的空间模式,并评估了不同生物地理区域的鸟类失乐园情况,以及为宠物交易或食用而捕获的物种的失乐园情况。结果体重及其与狩猎者的可及性和靠近城市市场的交互作用是狩猎导致鸟类数量下降的最重要驱动因素。据估计,热带地区所有物种的平均丰度下降了 12%,43% 的热带森林蕴藏着失谐的鸟类群落。体型较大的物种和印多玛拉雅界的数量下降幅度最大。此外,24% 的泛热带森林地区存在中度到高度的失乐园现象,为宠物贸易(巴西、中国和印度尼西亚)和食物消费(东南亚和西非)而捕获的物种具有独特的空间模式。我们进一步确定了过度开发对热带鸟类产生有害影响的热点地区,包括当地的鸟类灭绝事件,从而强调了保护工作的紧迫性,以解决为生存和贸易而进行的不可持续的开发。
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引用次数: 0
Structural and functional effects of global invasion pressure on benthic marine communities—patterns, challenges and priorities 全球入侵压力对海洋底栖生物群落的结构和功能影响--模式、挑战和优先事项
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-05-09 DOI: 10.1111/ddi.13838
Anastasija Zaiko, Alice Cardeccia, James T. Carlton, Graeme F. Clark, Joel C. Creed, Ian Davidson, Oliver Floerl, Bella Galil, Edwin Grosholz, Grant A. Hopkins, Emma L. Johnston, Jonne Kotta, Agnese Marchini, Henn Ojaveer, Gregory Ruiz, Thomas W. Therriault, Graeme J. Inglis

Aim

Retrospective (pre- vs. post-invasion) and cross-sectional comparisons of ecosystems exposed to high and low bioinvasion pressure, provide an alternative approach to evaluate shifts in biological communities associated with non-indigenous species (NIS) introductions. In this study, we aimed to examine general patterns of change in community composition, structure and function in six well-studied and globally distributed marine ecosystems that had documented histories of biological invasions.

Location

Global.

Methods

By considering a range of regional datasets and different sampling approaches, we evaluated trends within and among ecosystems by comparing paired measures of community and functional structure in either space or time.

Results

Our analyses revealed different patterns of structural and functional change at ecosystem scales, but direct comparisons across regions were hindered by confounding effects of study designs and other drivers of change. The most prominent shifts in community composition were observed in the retrospective studies, characterised by the greatest relative contribution of NIS. No uniform pattern of change in functional metrics was observed across study regions. However, functional evenness and dispersion showed a tendency to increase in systems under higher invasion pressure, refuting the hypothesis of selective accumulation of specific traits and functional homogenisation within ecosystems exposed to high invasion pressure.

Main Conclusions

Accumulation of NIS within broader communities can be a subtle process, with inherent spatial and temporal variability. Nonetheless, not only do species' proportional contributions to communities change over time in areas subjected to high bioinvasion pressure, but trait profiles can incrementally shift, which alters the original ecology of an area. Planned, long-term studies that incorporate a range of measures of environmental drivers and ecosystem response are crucial for better understanding of cumulative, community-level and ecosystem-scale change associated with biological invasions.

目的对受到高和低生物入侵压力的生态系统进行回顾性(入侵前与入侵后)和横断面比较,为评估与非土著物种(NIS)引入相关的生物群落变化提供了另一种方法。在这项研究中,我们的目标是在六个经过充分研究且分布于全球的海洋生态系统中,研究群落组成、结构和功能变化的一般模式,这些生态系统都有生物入侵的历史记录。结果我们的分析揭示了生态系统尺度上结构和功能变化的不同模式,但由于研究设计和其他变化驱动因素的混杂影响,不同区域间的直接比较受到阻碍。在回顾性研究中观察到的群落组成变化最为显著,其特点是NIS的相对贡献最大。不同研究区域的功能指标变化模式并不一致。然而,在入侵压力较高的系统中,功能均匀度和分散度呈上升趋势,这反驳了在面临高入侵压力的生态系统中特定性状选择性积累和功能同质化的假说。然而,在生物入侵压力较大的地区,不仅物种对群落的贡献比例会随着时间的推移而发生变化,而且性状也会逐渐发生变化,从而改变一个地区的原始生态。为了更好地了解与生物入侵相关的累积性、群落级和生态系统尺度变化,有计划地进行长期研究并纳入一系列环境驱动因素和生态系统响应措施至关重要。
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引用次数: 0
Landscape simplification leads to loss of plant–pollinator interaction diversity and flower visitation frequency despite buffering by abundant generalist pollinators 景观简化导致植物与授粉者互动多样性和花朵造访频率的损失,尽管有丰富的通类授粉者的缓冲作用
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-04-28 DOI: 10.1111/ddi.13853
Corina Maurer, Carlos Martínez-Núñez, Christophe Dominik, Jonna Heuschele, Yicong Liu, Peter Neumann, Robert J. Paxton, Loïc Pellissier, Willem Proesmans, Oliver Schweiger, Hajnalka Szentgyörgyi, Adam Vanbergen, Matthias Albrecht

Aim

Global change, especially landscape simplification, is a main driver of species loss that can alter ecological interaction networks, with potentially severe consequences to ecosystem functions. Therefore, understanding how landscape simplification affects the rate of loss of plant–pollinator interaction diversity (i.e., number of unique interactions) compared to species diversity alone, and the role of persisting abundant pollinators, is key to assess the consequences of landscape simplification on network stability and pollination services.

Location

France, Germany, and Switzerland.

Methods

We analysed 24 landscape-scale plant–pollinator networks from standardised transect walks along landscape simplification gradients in three countries. We compared the rates of species and interaction diversity loss along the landscape simplification gradient and then stepwise excluded the top 1%–20% most abundant pollinators from the data set to evaluate their effect on interaction diversity, network robustness to secondary loss of species, and flower visitation frequencies in simplified landscapes.

Results

Interaction diversity was not more vulnerable than species diversity to landscape simplification, with pollinator and interaction diversity showing similar rates of erosion with landscape simplification. We found that 20% of both species and interactions are lost with an increase of arable crop cover from 30% to 80% in a landscape. The decrease in interaction diversity was partially buffered by persistent abundant generalist pollinators in simplified landscapes, which were nested subsets of pollinator communities in complex landscapes, while plants showed a high turnover in interactions across landscapes. The top 5% most abundant pollinator species also contributed to network robustness against secondary species loss but could not prevent flowers from a loss of visits in simplified landscapes.

Main Conclusions

Although persistent abundant pollinators buffered the decrease in interaction diversity in simplified landscapes and stabilised network robustness, flower visitation frequency was reduced, emphasising potentially severe consequences of further ongoing land-use change for pollination services.

目的全球变化,尤其是地貌简化,是物种减少的主要驱动因素,可改变生态互动网络,对生态系统功能造成潜在的严重后果。因此,与物种多样性相比,了解景观简化如何影响植物与授粉者相互作用多样性(即独特相互作用的数量)的损失率,以及持续存在的丰富授粉者的作用,是评估景观简化对网络稳定性和授粉服务的影响的关键。我们比较了沿景观简化梯度的物种和互作多样性的损失率,然后逐步从数据集中剔除了前 1%-20%最丰富的传粉昆虫,以评估它们对互作多样性、网络对物种二次损失的稳健性以及简化景观中花朵的访问频率的影响。结果互作多样性并不比物种多样性更容易受到景观简化的影响,传粉昆虫和互作多样性在景观简化中的侵蚀率相似。我们发现,当景观中的耕地覆盖率从 30% 增加到 80% 时,物种和相互作用多样性都会减少 20%。简化景观中持续存在的丰富传粉昆虫(复杂景观中传粉昆虫群落的嵌套子集)部分缓冲了相互作用多样性的减少,而植物在不同景观中的相互作用则表现出很高的更替率。主要结论虽然持续丰富的传粉昆虫缓冲了简化景观中互作多样性的减少并稳定了网络的稳健性,但花朵的造访频率降低了,这强调了土地利用的进一步持续变化对授粉服务可能造成的严重后果。
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引用次数: 0
Underprediction of extirpation and colonisation following climate and land-use change using species distribution models 利用物种分布模型对气候和土地利用变化后的物种灭绝和殖民化预测不足
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-04-26 DOI: 10.1111/ddi.13834
Alistair G. Auffret, Hedvig Nenzén, Ester Polaina

Aim

To evaluate the performance of species distribution models in predicting observed colonisations, persistences and extirpations in response to changes in climate and land use over a multi-decadal period.

Location

Sweden.

Methods

We use historical (early 20th century) land use and climate data to build species distribution models for 84 plant species across three provinces of Sweden. Model performance was then evaluated internally using a subset of the historical data for cross-validation, as well as by using the models to project occurrences to the modern day and validating them with observed occurrences from 1990 to 2020. We then analysed predicted and observed occurrences in the modern period in terms of persistence, extirpation (local extinction) and colonisation in relation to species' habitat and climate associations.

Results

We found overall high agreement between evaluation methods, although internal evaluation gave consistently higher values for model performance (using true skill statistic, TSS). Overall, extirpations were worst predicted, with on average fewer than one-third of each species' extirpations being foreseen by the models. Colonisations were better predicted, while persistences were relatively well-predicted. Predictive accuracy of colonisations was higher for species with relatively warmer temperature associations (climate-driven expansion), while extirpations were better predicted in cool-related species (retractions at cool edges). Colonisations of forest-associated species were more common than predicted (underpredicted), despite widespread patterns of afforestation. Assessing grid-cell level turnover, we found that in grid cells that experienced the largest changes in terms of climate and land use, predicted extirpations were less likely to have happened.

Main Conclusions

We found that commonly applied modelling approaches have limited ability to predict observed changes in species occurrences, especially extirpations. This suggests that we should take predictions of future biodiversity loss very seriously. However, the ability for species to (at least temporarily) persist in unsuitable conditions could be an opportunity for biodiversity conservation.

地点瑞典方法我们利用历史(20 世纪初)土地利用和气候数据,为瑞典三个省的 84 个植物物种建立了物种分布模型。然后,使用历史数据的子集进行交叉验证,并使用模型预测现代的物种出现情况,再用 1990 年至 2020 年的观测物种出现情况进行验证,从而对模型的性能进行内部评估。然后,我们根据物种的栖息地和气候相关性,从持续性、灭绝(局部灭绝)和定殖等方面分析了预测和观测到的现代物种出现情况。结果我们发现,尽管内部评估得出的模型性能值(使用真实技能统计量,TSS)一直较高,但各种评估方法之间的总体一致性很高。总体而言,模型对物种灭绝的预测最差,平均每个物种只有不到三分之一的灭绝被模型预测到。定殖预测较好,而持续存在预测相对较好。与温度关联相对较暖的物种(气候驱动的扩张)的定殖预测准确率较高,而与凉爽相关的物种(在凉爽边缘的缩减)的灭绝预测准确率较高。尽管植树造林的模式很普遍,但森林相关物种的定殖比预测的更为普遍(预测不足)。在评估网格单元层面的更替时,我们发现在气候和土地利用方面经历了最大变化的网格单元中,预测的物种灭绝发生的可能性较小。这表明,我们应该认真对待对未来生物多样性丧失的预测。然而,物种(至少暂时)在不适宜的条件下存活的能力可能是保护生物多样性的一个机会。
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引用次数: 0
SNP-based analysis of European Thymallus spp. (Salmonidae) reveals extensive mito-nuclear discordance relevant for biogeographic inferences, taxonomy and conservation 基于 SNP 的欧洲胸腺鱼属(鲑科)分析揭示了与生物地理推断、分类和保护相关的广泛的有丝分裂-核不一致性
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-04-25 DOI: 10.1111/ddi.13845
Gernot K. Englmaier, Nuria Viñuela Rodríguez, Jernej Bravničar, Lukas Zangl, Henri Persat, Saša Marić, Clemens Ratschan, Bo Delling, Duarte V. Gonçalves, Giulia Secci-Petretto, Elsa Froufe, Steven J. Weiss

Aim

Paleohydrological dynamics are well-documented for European river systems, promoting shifting phases of isolation and connectivity of their aquatic fauna. These conditions coupled with high rates of hybridisation found in freshwater fishes may introduce considerable complexity and potential mito-nuclear discordance of phylogenetic patterns. We evaluate this hypothesis using the first large-scale analysis of nuclear SNPs in European species of grayling (Thymallus) compared to mtDNA data with the aim of reassessing the evolutionary history of this group of rheophilic fishes.

Location

Freshwater systems in Europe.

Methods

Based on mitochondrial (mitogenomes, control region) and nuclear (ddRADseq) data, we applied population-genetic, phylogenetic, and biogeographic tools to evaluate lineage diversity in the context of paleohydrological alterations.

Results

The results corroborated previously recognised high levels of lineage diversity, but revealed several cases of mito-nuclear discordance and signals of both historical (natural) and human-mediated introgression among major inter- and intraspecific lineages of Thymallus in Europe. A time-calibrated phylogeny and ancestral area estimation, based on nuclear SNP data, supported a late Pliocene diversification of the genus in Europe and suggested an early colonisation of the Black Sea basin with subsequent dispersal into Central and Western Europe.

Main Conclusions

The genetic structure of Thymallus in Europe recovered by nuclear SNPs contrasts considerably with that supported by mtDNA. Several instances of mito-nuclear discordance underscore frequent contact of allopatric lineages in a dynamic paleohydrological landscape and reveal the weakness of basing both taxonomic and conservation decisions on inferences based on mtDNA alone. The Danube and Rhine drainages were inferred as important zones of contact between divergent phylogeographic lineages. Additionally, our data cast doubt on the genetic integrity of the endangered T. aeliani. Its divergence from T. thymallus, using nuclear SNPs, appears minimal as samples of T. aeliani group within Danubian lineages, despite carrying highly divergent reciprocally monophyletic mtDNA.

目的 欧洲河流系统的古水文动态已得到充分记录,促进了其水生动物群的隔离和连接阶段的转变。这些条件加上淡水鱼类中发现的高杂交率可能会带来相当大的复杂性和潜在的系统发育模式的有丝分裂-核分裂不一致。我们首次大规模分析了欧洲白鲑(Thymallus)物种的核SNPs,并与mtDNA数据进行了比较,从而评估了这一假设,目的是重新评估这一类嗜流变鱼类的进化历史。方法基于线粒体(有丝分裂基因组、控制区)和核(ddRADseq)数据,我们应用种群遗传学、系统发生学和生物地理学工具来评估古水文变化背景下的鱼系多样性。结果结果证实了之前公认的高水平的种系多样性,但也揭示了一些有丝分裂-核不一致的情况,以及欧洲胸腺鞘氨醇主要种间和种内种系之间的历史(自然)和人类介导的引种信号。基于核 SNP 数据的时间校准系统发育和祖先区域估计支持该属在欧洲的上新世晚期分化,并表明该属早期在黑海盆地定居,随后扩散到中欧和西欧。有几个核-丝不一致的例子强调了在一个动态的古水文景观中异源系的频繁接触,并揭示了仅根据 mtDNA 的推断来进行分类和保护决策的弱点。多瑙河和莱茵河流域被推断为不同系统地理系之间的重要接触区。此外,我们的数据还对濒危的 T. aeliani 的遗传完整性提出了质疑。尽管 T. aeliani 的 mtDNA 相互单系,但通过核 SNPs 分析,它与 T. thymallus 的分化似乎微乎其微。
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引用次数: 0
Climate and anthropogenic activities threaten two langur species irrespective of their range size 气候和人类活动威胁着两种叶猴,无论其分布范围大小
IF 4.6 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2024-04-24 DOI: 10.1111/ddi.13841
Xiulin Ye, Paul A. Garber, Ming Li, Xumao Zhao
<div> <section> <h3> Aim</h3> <p>If species fail to track the pace of climate change, areas of suitable habitat and population size are likely to decline, threatening species survivorship. Here, we incorporated multiple measures of environmental change and species-specific habitat requirements to assess the responses of two closely related primate species to future changes in climate and habitat conversion. Specifically, we tested whether the comparatively wider-ranging and Endangered François' langur (<i>Trachypithecus francoisi</i>) is better suited to withstand future anthropogenic habitat conversion and climate change than is the more narrowly ranging and critically endangered white-headed langurs (<i>T. leucocephalus</i>).</p> </section> <section> <h3> Location</h3> <p>China.</p> </section> <section> <h3> Methods</h3> <p>We used species distribution models (SDMs) models and population viability analyses, and calculated dispersal velocity and biotic velocity, to predict the impact of climate and anthropogenic activity on the distribution and survivorship of two closely related primate species.</p> </section> <section> <h3> Results</h3> <p>We found that: (1) by the year 2050, the area of suitable habitat for both primate species is expected to decline by 45% to 47%; (2) the population size of François' langurs is expected to increase to 4000 individuals (129%) and the population size of white-headed langurs is expected to increase to 1400 individuals (133%); (3) biotic velocity, defined as the minimum migration rate required by a species to track its preferred climatic conditions, was 2.84 and 1.48 km/year for François' langurs and white-headed langurs, respectively; and (4) dispersal velocity, defined as the distance a species has spread over a given period, was 0.82 km/year for both langur species.</p> </section> <section> <h3> Main Conclusions</h3> <p>We demonstrate that despite expected population growth, by the year 2050, habitat contraction and insufficient opportunities for dispersal will likely prevent both primate species from tracking and adjusting to changing climate conditions. Moreover, the more widely ranging species, <i>T. francoisi</i>, was not found to have a survival advantage over the more narrowly ranging species (<i>T. leucocephalus</i>) under future conditions of climate change and continued anthropogenic habitat conversion, resulting in a high risk of extinction for both langur species. The modelling approach used here is
如果物种不能跟上气候变化的步伐,适宜的栖息地面积和种群数量很可能会减少,从而威胁到物种的生存。在这里,我们将环境变化和物种对特定栖息地的要求纳入多种衡量标准,以评估两种密切相关的灵长类物种对未来气候和栖息地转换变化的反应。具体而言,我们测试了活动范围相对较广的濒危弗朗索瓦叶猴(Trachypithecus francoisi)是否比活动范围较窄的极度濒危白头叶猴(T.中国。我们利用物种分布模型(SDMs)和种群生存力分析,并计算了扩散速度和生物速度,预测了气候和人为活动对两种密切相关的灵长类物种的分布和存活率的影响:(我们发现:(1) 到 2050 年,这两种灵长类动物的适宜栖息地面积预计将减少 45% 到 47%;(2) 弗朗索瓦叶猴的种群数量预计将增加到 4000 只(129%),白头叶猴的种群数量预计将增加到 1400 只(133%);(3) 生物迁徙速度(生物迁徙速度被定义为一个物种追踪其偏好的气候条件所需的最低迁徙速度)分别为 2.84 和 1.我们的研究表明,尽管预计种群数量会增长,但到 2050 年,栖息地的萎缩和迁徙机会的不足很可能会阻碍这两种灵长类动物追踪和适应不断变化的气候条件。此外,在未来气候变化和人类活动持续改变栖息地的情况下,活动范围较广的法氏叶猴与活动范围较窄的白叶叶猴相比,并不具有生存优势,因此这两种叶猴都有很高的灭绝风险。这里使用的建模方法非常稳健,可成功应用于其他濒危动物类群。
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引用次数: 0
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Diversity and Distributions
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