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Effects of Semi-Natural Habitats on Bird Occupancy in Different Intensity Agriculture: A Multi-Species Approach 半自然生境对不同强度农业鸟类占用的影响:多物种分析
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-26 DOI: 10.1111/ddi.70094
Wenyu Xu, Yongshan Xu, Jiyuan Yao, Weihong Zhu, Haitao Wang
<div> <section> <h3> Aim</h3> <p>Agriculture is a primary factor underlying worldwide declines in biodiversity. Incorporating semi-natural habitat features within agricultural landscapes is considered an effective strategy for mitigating the biodiversity loss associated with agricultural intensification. However, few studies have investigated whether and how the biodiversity-supporting capacity of semi-natural habitats varies across landscape-level agricultural intensity gradients.</p> </section> <section> <h3> Location</h3> <p>Agroecosystems of Central-Eastern Jilin, China.</p> </section> <section> <h3> Methods</h3> <p>The 84 passive acoustic monitors were deployed across agricultural intensity gradients for 30 days, collecting avian vocalisation data from 04:00 to 07:00 on alternate days. The collected avian vocalisation data were processed using BirdNET (an AI-based sound analysis tool) and were complemented by expert verification. We employed multi-species occupancy models to estimate bird occupancy rates, with subsequent analysis examining the relative influence of semi-natural habitats on these rates under different agricultural intensity gradients.</p> </section> <section> <h3> Results</h3> <p>Our results indicated that bird occupancy probabilities were higher in low- and middle-intensity agricultural landscapes compared to high-intensity agricultural landscapes, particularly for habitat edge-dependent insectivores. The supportive role of semi-natural habitats on bird occupancy was strongest in middle-intensity agriculture, with insectivores benefiting most significantly. Specifically, enhancing both the number of semi-natural habitat types and woodland coverage under middle-intensity agricultural practices would benefit various bird guilds. Increased waterbody coverage within farmland ecosystems positively impacted insectivorous birds regardless of agricultural intensity. Additionally, open-habitat species benefit from diversified crop cultivation patterns in low-to-middle intensity systems.</p> </section> <section> <h3> Main Conclusions</h3> <p>Our results demonstrate that enhancing bird occupancy rates by semi-natural habitats depends on both the agricultural intensity context and the functional group. Our findings provide critical evidence for biodiversity conservation strategies in agricultural ecosystems and contribute to reducing geographical biases in agro-ecological research on avifauna.</p> </section> </d
农业是导致全球生物多样性下降的主要因素。在农业景观中融入半自然栖息地特征被认为是缓解农业集约化带来的生物多样性丧失的有效策略。然而,关于半自然生境的生物多样性支持能力是否以及如何在景观水平的农业强度梯度上发生变化的研究很少。吉林中东部农业生态系统定位方法84台被动声监测仪在农业强度梯度上放置30 d,隔日04:00 - 07:00采集鸟类发声数据。收集到的鸟类发声数据使用BirdNET(一种基于人工智能的声音分析工具)进行处理,并辅以专家验证。采用多物种占用模型估算鸟类占用率,并分析了不同农业强度梯度下半自然生境对鸟类占用率的相对影响。结果低、中强度农业景观中鸟类的占用率高于高强度农业景观,特别是对栖息地边缘依赖的食虫动物。半自然生境对鸟类占用的支持作用在中等强度农业中最强,其中食虫动物受益最显著。具体而言,在中等强度的农业实践下,增加半自然栖息地类型的数量和林地覆盖率将使各种鸟类协会受益。农田生态系统水体覆盖率的增加对食虫鸟类产生了积极影响,而与农业强度无关。此外,开放生境物种受益于中低强度系统中多样化的作物种植模式。研究结果表明,提高半自然生境鸟类占用率取决于农业强度背景和功能类群。本研究结果为农业生态系统生物多样性保护策略提供了重要依据,并有助于减少农业生态研究中鸟类的地理偏差。
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引用次数: 0
Cover page 封面页
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-25 DOI: 10.1111/ddi.70096

The cover image relates to the Research Article https://doi.org/10.1111/ddi.70070 “Direct Integration of Population Genetics and Dynamic Species Distribution Modelling Improves Predictions of Post-Glacial History of Piper nigrum” Photo credit: Sandeep Sen

封面图片与研究文章https://doi.org/10.1111/ddi.70070“种群遗传学和动态物种分布模型的直接整合改善了对Piper nigrum后冰期历史的预测”有关
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引用次数: 0
Habitat Protection Alone Is Insufficient: Costa Rican Parrots Thrive in Altered Landscapes but Remain Vulnerable to Poaching 仅靠栖息地保护是不够的:哥斯达黎加鹦鹉在改变的景观中茁壮成长,但仍然容易受到偷猎
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-24 DOI: 10.1111/ddi.70084
P. Romero-Vidal, J. M. Barbosa, G. Blanco, F. Hiraldo, M. Carrete, J. L. Tella
<div> <section> <h3> Aim</h3> <p>Human population growth and resource overexploitation have induced major changes in global biodiversity. Costa Rica, with 26% of its land area protected, is often cited as a model of environmental conservation. However, conservation efforts have largely focused on habitat preservation, while overharvesting remains an unquantified factor in wildlife decline. Here, we used parrots as a model to assess changes in their presence, abundance and richness in relation to habitat transformation, while also quantifying for the first time the poaching pressure they face, driven by the demand for them as domestic pets.</p> </section> <section> <h3> Location</h3> <p>Costa Rica.</p> </section> <section> <h3> Methods</h3> <p>We conducted a broad-scale survey across the country to simultaneously obtain data on the relative abundance of parrots in different habitats and estimate poaching pressure by recording illegal household pets and parrots seized by authorities. Then, we related the presence, abundance and richness of parrots to habitat characteristics using two complementary approaches (i.e., patches along transects and points where we had detected at least one individual) and examined whether certain species were poached with greater intensity than others.</p> </section> <section> <h3> Results</h3> <p>We found that parrot presence, abundance and richness tend to decrease in modified habitats, particularly agricultural areas, although this trend reverses in human settlements. On the other hand, our surveys revealed near-ubiquitous ownership of native parrots illegally kept as pets, which were recorded in 86.6% of the sampled localities and in 81.5% of the surveyed houses. Several threatened macaw and Amazon species were poached more than expected attending to their abundances in the wild.</p> </section> <section> <h3> Main Conclusions</h3> <p>Although our methodology does not allow for a direct comparison of the impact of habitat loss and poaching, our findings suggest that parrot communities are affected by habitat changes while they can tolerate certain levels of habitat transformation, such as urbanisation. On the other hand, parrot species preferred by people still face intense poaching pressure for the domestic pet trade. Focusing conservation efforts solely on habitat protection will be insufficient to preserve these critical components of tropical ecosystems. More effective measures are needed to curb poaching and addres
目的人口增长和资源过度开发导致全球生物多样性发生重大变化。哥斯达黎加有26%的国土面积受到保护,经常被认为是环境保护的典范。然而,保护工作主要集中在栖息地保护上,而过度捕捞仍然是野生动物减少的一个无法量化的因素。在这里,我们以鹦鹉为模型来评估它们的存在、丰度和丰富度与栖息地变化的关系,同时也首次量化了它们面临的偷猎压力,这是由对它们作为家养宠物的需求所驱动的。地点:哥斯达黎加。方法在全国范围内进行大规模调查,同时获取不同栖息地鹦鹉的相对丰度数据,并通过记录非法家庭宠物和当局查获的鹦鹉来估计偷猎压力。然后,我们将鹦鹉的存在、丰度和丰富度与栖息地特征联系起来,使用两种互补的方法(即,沿着样带的斑块和我们至少检测到一个个体的点),并检查某些物种是否比其他物种被偷猎的强度更大。结果在改良生境中,鹦鹉的数量、丰度和丰富度呈下降趋势,尤其是在农业地区,而在人类住区中,这一趋势则相反。另一方面,我们的调查显示,非法饲养本地鹦鹉作为宠物的情况几乎无处不在,在86.6%的采样地区和81.5%的调查家庭中都有记录。一些受到威胁的金刚鹦鹉和亚马逊物种被偷猎的次数超过了预期,因为它们在野外的数量很多。虽然我们的方法不能直接比较栖息地丧失和偷猎的影响,但我们的研究结果表明,鹦鹉群落受到栖息地变化的影响,同时它们可以忍受一定程度的栖息地转变,如城市化。另一方面,人们喜欢的鹦鹉品种仍然面临着国内宠物贸易的巨大偷猎压力。仅仅把保护工作的重点放在保护生境上是不足以保护热带生态系统的这些关键组成部分的。需要采取更有效的措施来遏制偷猎,并解决将野生鹦鹉作为宠物饲养的根深蒂固的文化传统。
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引用次数: 0
Correction to ‘Migratory Connectivity and Non-Breeding Habitat Segregation Across Biogeographical Scales in Closely Related Seabird Taxa’ 更正“在密切相关的海鸟分类群中跨越生物地理尺度的迁徙连通性和非繁殖栖息地隔离”
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-23 DOI: 10.1111/ddi.70082

Morera-Pujol, V., Catry, P., Magalhães, M. et al. 2025. “Migratory Connectivity and Non-Breeding Habitat Segregation Across Biogeographical Scales in Closely Related Seabird Taxa.” Diversity and Distributions 31: e70013. https://doi.org/10.1111/ddi.70013.

The affiliation information for author Isabel Afán was incorrect in the published article. The correct affiliation information should be: Institut de Ciències del Mar, CSIC, Barcelona, Spain.

The data availability statement contained erroneous links in the published article. The correct statement should read as follows: ‘The novel code developed for this manuscript can be found at https://github.com/VirginiaMorera/Migratory-connectivity and the tracking data necessary to perform the analyses can be downloaded at https://doi.org/10.5061/dryad.g79cnp5z7. The data on colony locations and breeding populations is available in the Supporting Information of Morera-Pujol et al., 2023. Methods to detect spatial biases in tracking studies caused by differential representativeness of individuals, populations and time. Diversity and Distributions, 29, 19–38. https://doi.org/10.1111/ddi.13642’.

We apologize for this error.

Morera-Pujol, V., Catry, P., magalh, M.等人。“在密切相关的海鸟分类群中,跨越生物地理尺度的迁徙连通性和非繁殖栖息地隔离。”多样性与分布[j];https://doi.org/10.1111/ddi.70013.The作者Isabel Afán的关联信息在发表的文章中是不正确的。正确的归属信息应该是:CSIC,巴塞罗那,西班牙,马德里城市研究所。数据可用性声明在已发表的文章中包含错误链接。正确的声明应该如下:“为本文开发的新代码可以在https://github.com/VirginiaMorera/Migratory-connectivity上找到,执行分析所需的跟踪数据可以在https://doi.org/10.5061/dryad.g79cnp5z7上下载。关于种群位置和繁殖种群的数据可参见Morera-Pujol等人,2023年的《支持信息》。追踪研究中因个体、群体和时间的差异代表性而引起的空间偏差检测方法。生态学报,29(1):19-38。https://doi.org/10.1111/ddi.13642 '我们为这个错误道歉。
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引用次数: 0
Improving the Accuracy of Predicted Potential Distributions and Enhancing the Effectiveness of Priority Conservation Areas for Protected Species by Expanding the Target Area 扩大目标区域,提高潜在分布预测的准确性,增强优先保护区的有效性
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-23 DOI: 10.1111/ddi.70087
Jin Ye, Feiling Yang, Jinming Hu, Hengying Wang, Jihong Xu, Zhongxing Yang, Feng Liu, Jian Zhou, Jing Gong, Bing Han, Xuexin Yang, Ruidong Wu

Aim

Subjective study area delineation in conservation planning often overlooks species occurrences integrality, truncating the ecological niches. Incorporating occurrences from expanded areas into species distribution prediction within the study area provides an innovative approach to mitigate negative impacts, but the conservation effectiveness of this approach requires further clarification.

Location

We selected the Southeast Himalaya Biodiversity Priority Conservation Area and the Himalayas biogeographic region as the target and expanded areas, respectively.

Methods

We set three scenarios by extracting species occurrences from the target area, expanded area, and both areas (scenarios 1, 2, and 3, respectively). Using MaxEnt for predicting the potential distributions of species (SPDs) and Zonation for identifying priority conservation areas (PCAs) across the three scenarios, we evaluated the SPD prediction accuracy, conservation effectiveness, and ecological representativeness.

Results

Incorporating data from the expanded area in scenarios 2 and 3 improved the prediction accuracy and covered a wider SPD range than scenario 1. High-richness areas and PCAs in scenarios 2 and 3 were identified in the Kangrigebu South Wing Mountains, Salween and Lancangjiang Incisive Mountains, and southern Brahmaputra Great Turn and Upper Salween Incisive Mountains. These PCAs improved the coverage of the SPD areas (77.74%–82.20%) and priority forest and wetland ecosystems (11.86%–12.84%). In contrast, the PCAs in scenario 1 had a relatively larger distribution in the Himalayas Central Mountains, covering a higher proportion of their own SPD areas (83.75%) and priority steppe ecosystem (31.55%). Overall, scenarios 2 and 3 demonstrated greater conservation effectiveness and ecological representativeness, with minimal differences between them, and both outperformed scenario 1.

Main Conclusions

Our study proposed an innovative approach that expanded the study area to biogeographic regions and supplemented species occurrences from these expanded areas, thereby improving the prediction accuracy of SPDs and conservation effectiveness, while providing an easily implementable and generalizable framework in data deficient areas.

目的在自然保护规划中,主观划定研究区往往忽视物种分布的完整性,截断生态位。将扩大区域的发生情况纳入研究区域内的物种分布预测提供了一种减轻负面影响的创新方法,但这种方法的保护效果需要进一步澄清。我们选择了喜马拉雅东南部生物多样性优先保护区和喜马拉雅生物地理区域作为目标区和扩展区。方法分别从目标区、扩展区和两区提取物种发生情况,设置3种情景(情景1、情景2和情景3)。利用MaxEnt预测三种情景下物种的潜在分布和优先保护区的区划,对SPD的预测精度、保护效果和生态代表性进行了评价。结果与情景1相比,情景2和情景3中扩展区域的数据提高了预测精度,覆盖的SPD范围更广。2、3情景下的高丰饶区和高丰饶区分别位于康日格布南翼山脉、萨尔温江和澜沧江陡坡山脉、雅鲁藏布江大转弯处南部和萨尔温江陡坡上。这些措施提高了森林保护地的覆盖率(77.74% ~ 82.20%)和重点森林湿地生态系统的覆盖率(11.86% ~ 12.84%)。相比之下,情景1中pca在喜马拉雅中部地区的分布相对较大,占自身SPD区域的比例较高(83.75%),优先草原生态系统占31.55%。总体而言,情景2和情景3表现出更大的保护效果和生态代表性,两者之间的差异很小,两者都优于情景1。本研究提出了一种创新的方法,将研究范围扩大到生物地理区域,并补充这些扩展区域的物种发生情况,从而提高了SPDs的预测精度和保护效果,同时为数据不足地区提供了一个易于实施和推广的框架。
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引用次数: 0
Direct Integration of Population Genetics and Dynamic Species Distribution Modelling Improves Predictions of Post-Glacial History of Piper nigrum 种群遗传学和动态物种分布模型的直接整合改进了对黑胡椒冰期后历史的预测
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-22 DOI: 10.1111/ddi.70070
Sandeep Sen, Michael Peter Nobis, Rani M.S. Saggere, Srirama Ramanujam, Thomson Davis, Dirk Nikolaus Karger, G. Ravikanth, Yoshiaki Tsuda

Aim

Climate change has a strong impact on species ranges and the genetic structure of populations, yet conclusions are often subject to large uncertainties when both are analysed independently. Here, we develop a novel framework to directly integrate population genetics and dynamic species distribution modelling to reduce such uncertainties when reconstructing the post-glacial history of black pepper.

Location

Western Ghats, India.

Methods

Genetic data of 243 individuals from 14 populations of wild Piper nigrum were derived from six chloroplast and five nuclear DNA simple sequence repeats (SSRs). Dynamic species distribution models (DSDMs) were applied since the Last Glacial Maximum (LGM, 21,000 years BP) based on paleo-climatic suitability at a high resolution (1 km, 100 years) and evaluated for a wide range of estimated migration rates and climate niches of the species. Population genetics and DSDMs were finally combined in a genetically informed DSDM, in which the estimated model parameters were optimised by maximising the correlation between the genetic diversity of the populations and their simulated colonisation history since the LGM.

Results

We observed higher gene diversity, haplotype richness, and allelic richness at lower latitudes, and two major phylogeographic groups belonging to the southern and central Western Ghats. Demographic inference from chloroplast SSRs estimated the split of these groups around the LGM. DSDMs showed a high uncertainty in parameter estimates, which were clearly reduced for the genetically informed DSDM. With this model, the correlation between genetic diversity and colonisation time was stronger than the correlation with latitude, and the simulation showed a northward expansion from low-latitude refugia and a recent fragmentation of the species range.

Main Conclusions

Our integrative approach reduces uncertainty in DSDMs and facilitates the interpretation of the population genetic structure. This added value is not given when population genetics and species distribution modelling are applied independently and merely compared.

气候变化对物种范围和种群遗传结构有强烈的影响,然而当两者独立分析时,结论往往受到很大的不确定性。在此,我们开发了一个新的框架来直接整合群体遗传学和动态物种分布模型,以减少重建黑胡椒冰川后历史时的不确定性。地点:印度西高止山脉。方法利用6个叶绿体和5个细胞核DNA简单序列重复序列(SSRs)对野生胡椒14个居群243个个体进行遗传分析。基于高分辨率(1 km, 100年)的古气候适宜性,应用末次冰期极大期(LGM, 21000 BP)以来的动态物种分布模型(DSDMs),对物种的大范围迁移速率和气候生态位进行了评估。最后,将种群遗传学和DSDM结合在一个遗传知情的DSDM中,其中通过最大化种群遗传多样性与其自LGM以来模拟的殖民化历史之间的相关性来优化估计的模型参数。结果高止山脉的基因多样性、单倍型丰富度和等位基因丰富度在低纬度地区较高,主要分布在高止山脉的南部和中部。根据叶绿体SSRs的人口统计学推断,这些群体在LGM周围分裂。DSDM在参数估计方面显示出很高的不确定性,对于遗传知情的DSDM,这种不确定性明显降低。根据该模型,遗传多样性与殖民时间的相关性强于与纬度的相关性,并且模拟显示了从低纬度避难所向北扩展和物种范围最近的碎片化。我们的综合方法减少了DSDMs的不确定性,有助于解释群体遗传结构。当单独应用群体遗传学和物种分布模型并仅仅进行比较时,这种附加价值是不存在的。
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引用次数: 0
A Dual Role of Common Mammals as Dispersers of Plants and Micro-Invertebrates Across Isolated Wetlands 普通哺乳动物在孤立湿地中作为植物和微型无脊椎动物传播者的双重作用
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-22 DOI: 10.1111/ddi.70088
Maxi Tomowski, Katrin Kiemel, Tina Birnbach, Victor Parry, Michael Ristow, Manuel Roeleke, Ralph Tiedemann, Guntram Weithoff, Florian Jeltsch
<div> <section> <h3> Aim</h3> <p>Dispersal strategies are vital for sessile or passively moving organisms, profoundly influencing the distribution and survival of plant and small-sized animal species. The role of large mammals in dispersal and habitat (re)colonisation is well recognised, yet their full contribution across propagule taxa, various dispersers and dispersal modes remains unclear. We assessed the role of common wild mammals in dispersing (semi-aquatic) plants and micro-invertebrates among isolated wetlands, identifying the most effective dispersal agent(s) within a natural assemblage.</p> </section> <section> <h3> Location</h3> <p>Northeast Germany.</p> </section> <section> <h3> Methods</h3> <p>In a system of small semi-natural wetlands within an intensive agricultural landscape, we combined non-invasive faecal sampling with opportunistic fur collection from managed and trapped mammals, cultivating plants and micro-invertebrates from these samples to explore dispersal-network structures, quantify taxon richness and propagule abundances, and comparedisperser effectiveness.</p> </section> <section> <h3> Results</h3> <p>We found distinct network topologies for (semi-aquatic) plants and micro-invertebrates, indicating differential contributions and complementary roles of disperser groups and dispersal modes. Roe deer (<i>Capreolus capreolus</i>), wild boar (<i>Sus scrofa</i>) and raccoons (<i>Procyon lotor</i>) were key dispersers, highlighting the broad role of generalist mammals in wetland propagule dispersal. In micro-invertebrates, endozoochorous communities were nested within more diverse epizoochorous communities, with both raccoons and wild boar transporting more diverse taxa through epizoochory. No quantitative differences in endozoochorous dispersal emerged among dispersers. Transported plant communities were dominated by taxa lacking predefined zoochorous syndromes, challenging assumptions about trait-based dispersal constraints.</p> </section> <section> <h3> Main Conclusions</h3> <p>The broad spectrum of wild mammals identified as dispersers, supported by quantitative means, offers significant potential for facilitating efficient dispersal of both plants and micro-invertebrates, consistent with the concept of ‘non-classical zoochory’. Dispersal by abundant and managed mammals is crucial for ecosystem connectivity and resilience. Altered disperser communities due to population control or habitat changes may affect (re)colonisation
目的扩散策略对无根或被动移动的生物至关重要,深刻影响着植物和小型动物物种的分布和生存。大型哺乳动物在扩散和栖息地(再)定殖中的作用已得到充分认识,但它们在繁殖类群、各种分散者和扩散模式中的全部贡献仍不清楚。我们评估了普通野生哺乳动物在孤立湿地中分散(半水生)植物和微型无脊椎动物的作用,确定了自然组合中最有效的分散剂。位置:德国东北部。方法在集约化农业景观中的小型半自然湿地系统中,我们将非侵入性粪便采样与管理和捕获的哺乳动物的机会性皮毛采集相结合,从这些样本中培养植物和微型无脊椎动物,以探索分散网络结构,量化分类群丰富度和繁殖体丰度,并比较分散器的有效性。结果发现(半水生)植物和微型无脊椎动物的网络拓扑结构不同,这表明了传播者群体和传播模式的不同贡献和互补作用。鹿(Capreolus Capreolus)、野猪(Sus scrofa)和浣熊(Procyon lotor)是主要的传播者,突出了通才哺乳动物在湿地传播体传播中的广泛作用。在微型无脊椎动物中,内窥镜群落在更多样化的内窥镜群落中筑巢,浣熊和野猪都通过内窥镜运输了更多样化的类群。在分散剂之间,内毒素扩散没有数量上的差异。迁移的植物群落主要由缺乏预定义的动物性综合征的类群组成,这挑战了基于性状的扩散约束的假设。广泛的野生哺乳动物被确定为传播者,在定量手段的支持下,为促进植物和微型无脊椎动物的有效传播提供了巨大的潜力,符合“非经典动物学”的概念。数量丰富且受到管理的哺乳动物的扩散对生态系统的连通性和复原力至关重要。由于人口控制或栖息地变化而改变的散布者群落可能会影响(重新)殖民化和当地生物多样性,这突出表明需要采取策略来保护整个景观的传播功能。
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引用次数: 0
Combining eDNA and Visual Surveys Improves Detection of Reef Fishes Across Their Biogeographic Ranges 结合eDNA和视觉调查提高了对珊瑚礁鱼类生物地理范围的检测
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-22 DOI: 10.1111/ddi.70089
Chloe Hayes, Ayşe Haruka Oshima Açıkbaş, Angus Mitchell, David J. Booth, Timothy Ravasi, Ivan Nagelkerken

Aim

Rapid shifts in marine species distributions driven by ocean warming require more effective monitoring across entire ranges to detect emerging ecological change. Traditionally, visual surveys have been used to track these distributional shifts, but they often overlook small-bodied, rare or cryptic species, potentially underestimating range changes. Environmental DNA (eDNA) bypasses these limitations, yet its effectiveness in detecting species near their range limits remains understudied.

Location

Eastern Australia.

Methods

We combined eDNA metabarcoding and visual surveys to assess reef fish communities across nine sites spanning a 2000-km latitudinal gradient within a global warming hotspot encapsulating tropical, subtropical and temperate reefs. Variation in detectability across methods and biogeographic ranges was also assessed at the level of functional traits (trophic guild, thermal guild and water column position).

Results

eDNA and visual surveys revealed different fish species compositions, potentially underestimating the extent of fish biogeographic ranges. eDNA detected 44 more unique tropical species than visual surveys across their range, and was more effective at detecting tropical carnivores, omnivores, invertivores, planktivores, detritivores and all water column positions. In contrast, visual surveys were more effective at detecting temperate carnivores, invertivores and benthic species. For tropical fishes at their cold range edge in temperate ecosystems, eDNA identified 12 unique species, including herbivores and cryptic species not previously recorded by long-term visual surveys. Contrastingly, eDNA detected 20 fewer temperate species than visual surveys across their biogeographic range and was less effective (five unique species) than visual surveys (nine unique species) at detecting temperate species at their warm trailing range in subtropical ecosystems.

Conclusions

Combining eDNA and visual surveys improves the detection of reef fishes near the limits of their known distributions. This approach helps reveal overlooked species, particularly those that are cryptic, rare or low in abundance, and supports more accurate assessments of species distributions across biogeographic gradients.

目的海洋变暖导致海洋物种分布的快速变化,需要对整个范围进行更有效的监测,以发现正在出现的生态变化。传统上,视觉调查被用来追踪这些分布变化,但他们经常忽略小体,稀有或隐蔽的物种,潜在地低估了范围变化。环境DNA (eDNA)绕过了这些限制,但其在检测接近其范围限制的物种方面的有效性仍未得到充分研究。地点:澳大利亚东部。方法结合eDNA元条形码和视觉调查,对全球变暖热点地区包括热带、亚热带和温带珊瑚礁在内的9个地点的珊瑚鱼群落进行了评估,这些地点跨越2000公里的纬度梯度。在功能性状(营养行会、热行会和水柱位置)水平上,还评估了不同方法和生物地理范围的可探测性差异。结果eDNA和目视调查显示了不同的鱼类种类组成,可能低估了鱼类的生物地理范围。与目测相比,eDNA检测到44种独特的热带物种,并且在检测热带食肉动物、杂食动物、无脊椎动物、浮游动物、腐食动物和所有水柱位置时更有效。相比之下,视觉调查在发现温带食肉动物、无脊椎动物和底栖动物物种时更有效。对于温带生态系统中处于寒冷边缘的热带鱼,eDNA鉴定出了12种独特的物种,包括食草动物和以前没有通过长期视觉调查记录的隐物种。相比之下,eDNA在其生物地理范围内发现的温带物种比目测少20种,在亚热带生态系统温暖尾随范围内发现温带物种的效果(5种独特物种)低于目测(9种独特物种)。结论结合eDNA和目视调查可以提高对已知分布极限附近的礁鱼的检测。这种方法有助于揭示被忽视的物种,特别是那些隐蔽的、稀有的或丰度低的物种,并支持更准确地评估物种在生物地理梯度中的分布。
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引用次数: 0
Improving Species Distribution Models for Stream Networks by Incorporating Spatial Autocorrelation in Multi-Sourced Datasets: A Range-Wide Assessment of Idaho Giant Salamander Status and Future Risk 利用多源数据集的空间自相关改进河流网络的物种分布模型:爱达荷大鲵现状和未来风险的范围评估
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-16 DOI: 10.1111/ddi.70085
Daniel J. Isaak, Michael Dumelle, Dona L. Horan, Daniel H. Mason, Thomas W. Franklin, David E. Nagel, Jay M. Ver Hoef, Michael K. Young
<div> <section> <h3> Aim</h3> <p>Fundamental to species conservation efforts is the development of accurate distribution models. Doing so is challenging for many stream organisms, where limited funding may necessitate the compilation of incidental observations from multiple sources which lack an overall sampling design and are often spatially clustered. We demonstrate the application of specialised spatial-stream-network models (SSNMs), which incorporate autocorrelation among observations and have the potential to improve species distribution models for many organisms.</p> </section> <section> <h3> Location</h3> <p>Rocky Mountains in west-central North America.</p> </section> <section> <h3> Methods</h3> <p>We compiled a comprehensive presence-absence dataset for Idaho giant salamander (IGS; <i>Dicamptodon aterrimus</i>) from previous studies, natural resource agencies, museum collections and new surveys, and linked these data to geospatial habitat covariates. The dataset was modelled using a suite of candidate SSNMs, and results were compared to those from non-spatial generalised linear models (GLMs). The top-ranked models were used to predict range-wide IGS occurrence probabilities for scenarios that represented historical baselines and futures associated with two model covariates (water temperature and riparian tree canopy density) that are changing with environmental trends in the study area.</p> </section> <section> <h3> Results</h3> <p>The classification accuracy of salamander observations was higher with SSNMs than GLMs (90.8% vs. 63.2%) and the spatial models identified fewer significant habitat relationships, which simplified model interpretation. Baseline range estimates from the models were similar (13,090–14,114 stream km) and both predicted small range expansions (2.0%–24.8%) with future warming because many streams were sub-optimally cold for IGS. However, these expansions were partially offset in scenarios which included decreases in riparian canopy density.</p> </section> <section> <h3> Main Conclusions</h3> <p>SSNMs significantly improved species distribution models on stream networks by incorporating spatial autocorrelation and provide an inexpensive means of developing new information from many existing datasets. This incentivises aggregation of datasets, which could be further leveraged to create efficient monitoring and inventory programs using the spatially explicit outputs from SSNMs.</p> </section>
目的建立准确的分布模型是物种保护工作的基础。这样做对许多溪流生物来说是具有挑战性的,在这些地方,有限的资金可能需要汇编来自多个来源的偶然观察结果,这些来源缺乏总体抽样设计,而且往往是空间聚集的。我们展示了专门的空间流网络模型(SSNMs)的应用,该模型结合了观测结果之间的自相关性,并有可能改善许多生物的物种分布模型。落基山脉位于北美中西部。方法从前人的研究、自然资源机构、博物馆收藏和新调查中收集爱达荷大鲵(IGS; Dicamptodon aterrimus)的存在-缺失数据,并将这些数据与地理空间栖息地协变量联系起来。使用一套候选ssnm对数据集进行建模,并将结果与非空间广义线性模型(GLMs)的结果进行比较。排名靠前的模型被用来预测与两个模型协变量(水温和河岸树冠密度)相关的历史基线和未来情景的IGS发生概率,这两个模型协变量随着研究区域的环境趋势而变化。结果SSNMs对蝾螈的分类精度高于GLMs (90.8% vs. 63.2%),空间模型识别的显著生境关系较少,简化了模型解释。模型的基线范围估计相似(13,090-14,114溪流公里),并且都预测了未来变暖的小范围扩展(2.0%-24.8%),因为许多溪流对IGS来说是次优冷的。然而,在河岸冠层密度降低的情况下,这些扩张被部分抵消。SSNMs通过整合空间自相关性显著改善了物种分布模型,并提供了一种从众多现有数据集中开发新信息的廉价手段。这激励了数据集的聚合,可以进一步利用ssnm的空间明确输出来创建有效的监测和库存程序。
{"title":"Improving Species Distribution Models for Stream Networks by Incorporating Spatial Autocorrelation in Multi-Sourced Datasets: A Range-Wide Assessment of Idaho Giant Salamander Status and Future Risk","authors":"Daniel J. Isaak,&nbsp;Michael Dumelle,&nbsp;Dona L. Horan,&nbsp;Daniel H. Mason,&nbsp;Thomas W. Franklin,&nbsp;David E. Nagel,&nbsp;Jay M. Ver Hoef,&nbsp;Michael K. Young","doi":"10.1111/ddi.70085","DOIUrl":"https://doi.org/10.1111/ddi.70085","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Fundamental to species conservation efforts is the development of accurate distribution models. Doing so is challenging for many stream organisms, where limited funding may necessitate the compilation of incidental observations from multiple sources which lack an overall sampling design and are often spatially clustered. We demonstrate the application of specialised spatial-stream-network models (SSNMs), which incorporate autocorrelation among observations and have the potential to improve species distribution models for many organisms.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Rocky Mountains in west-central North America.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We compiled a comprehensive presence-absence dataset for Idaho giant salamander (IGS; &lt;i&gt;Dicamptodon aterrimus&lt;/i&gt;) from previous studies, natural resource agencies, museum collections and new surveys, and linked these data to geospatial habitat covariates. The dataset was modelled using a suite of candidate SSNMs, and results were compared to those from non-spatial generalised linear models (GLMs). The top-ranked models were used to predict range-wide IGS occurrence probabilities for scenarios that represented historical baselines and futures associated with two model covariates (water temperature and riparian tree canopy density) that are changing with environmental trends in the study area.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The classification accuracy of salamander observations was higher with SSNMs than GLMs (90.8% vs. 63.2%) and the spatial models identified fewer significant habitat relationships, which simplified model interpretation. Baseline range estimates from the models were similar (13,090–14,114 stream km) and both predicted small range expansions (2.0%–24.8%) with future warming because many streams were sub-optimally cold for IGS. However, these expansions were partially offset in scenarios which included decreases in riparian canopy density.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;SSNMs significantly improved species distribution models on stream networks by incorporating spatial autocorrelation and provide an inexpensive means of developing new information from many existing datasets. This incentivises aggregation of datasets, which could be further leveraged to create efficient monitoring and inventory programs using the spatially explicit outputs from SSNMs.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 ","PeriodicalId":51018,"journal":{"name":"Diversity and Distributions","volume":"31 9","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/ddi.70085","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145101166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Global Coastal Biogeographic Boundaries: Unveiling the Nature of Processes Shaping the Distribution of Marine Biodiversity 全球沿海生物地理边界:揭示塑造海洋生物多样性分布过程的本质
IF 4.2 2区 环境科学与生态学 Q1 BIODIVERSITY CONSERVATION Pub Date : 2025-09-08 DOI: 10.1111/ddi.70083
Everton Giachini Tosetto, Matthieu Lengaigne, Miodeli Nogueira Junior, Christophe Lett, Sigrid Neumann-Leitão, Arnaud Bertrand
<div> <section> <h3> Aim</h3> <p>Identify biogeographic boundaries that delineate the distribution of species assemblages along global non-insular coastlines, characterise the potential barriers responsible for biogeographic boundaries and realign coastal biogeographic provinces.</p> </section> <section> <h3> Location</h3> <p>Global.</p> </section> <section> <h3> Time Period</h3> <p>Not applied.</p> </section> <section> <h3> Major Taxa Studied</h3> <p>Animalia.</p> </section> <section> <h3> Methods</h3> <p>Global databases of marine animals were used to define biogeographic boundaries as regions that concentrate species range limits. To mitigate sampling bias inherent in uneven presence records in biodiversity databases, we applied a resampling methodology. We used the identified dispersal barriers to divide the study area into ecoregions in order to realign coastal biogeographic provinces. These ecoregions were then clustered into biogeographic provinces based on the similarity of their biodiversity.</p> </section> <section> <h3> Results</h3> <p>We identified 24 biogeographic boundaries along the coastlines of the Americas and 27 along Afro-Eurasia. The 52 ecoregions delimited by the biogeographic boundaries were classified into 23 biogeographic provinces. In most cases, the proportion of exclusive species within each province was higher than 25%. When comparing the proportion of exclusive species to the previous classifications of biogeographic provinces, a higher proportion was found. Of the 21 boundaries of the new biogeographic provinces, nine are aligned with and six are close to previous boundaries between the biogeographic provinces or realms defined in previous studies. Our analysis revealed the presence of 6 additional subdivisions and significant realignments within the marine biogeographic provinces.</p> </section> <section> <h3> Main Conclusions</h3> <p>The objective data-driven approach was effective to identify biogeographic boundaries and realign biogeographic provinces. Most boundaries were associated with strong thermohaline gradients, which typically occur along water-mass fronts due to converging currents, upwelling or river discharge. Such processes, in conjunction with geomorphology and circulation patterns, interact to restri
目的确定全球非岛屿海岸线上物种分布的生物地理边界,描述生物地理边界的潜在障碍,并重新调整沿海生物地理省。位置 全球。时间段不适用。研究动物的主要分类群。方法利用全球海洋动物数据库,将生物地理边界定义为物种分布范围集中的区域。为了减轻生物多样性数据库中不均匀存在记录所固有的采样偏差,我们采用了重采样方法。为了重新调整沿海生物地理省,我们利用确定的扩散屏障将研究区划分为生态区。然后根据生物多样性的相似性将这些生态区聚类为生物地理省。结果沿美洲海岸线确定了24个生物地理界线,沿非洲-欧亚大陆确定了27个生物地理界线。按生物地理界线划分的52个生态区可划分为23个生物地理省。在大多数情况下,各省特有种的比例都在25%以上。与以往生物地理省的分类相比,特有种的比例更高。在21个新生物地理省域边界中,9个与前人研究确定的生物地理省域边界一致,6个与前人研究确定的生物地理省域边界接近。分析结果表明,在海洋生物地理省域中存在6个额外的细分和显著的重新调整。结论客观数据驱动方法是确定生物地理边界和调整生物地理省域的有效方法。大多数边界与强温盐梯度有关,这种梯度通常发生在水团前沿,由于汇聚流、上升流或河流排放。这些过程与地貌和环流模式一起,通过限制移动和根据生态位过滤物种,相互作用,限制海洋生物的扩散。
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