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Quality Assurance in Tissue Resources Supporting Biomedical Research. 支持生物医学研究的组织资源质量保证。
Pub Date : 2008-07-30 DOI: 10.1089/CPT.2008.9993
W. Grizzle, Katherine C. Sexton, W. Bell
Modern biomedical research requires access to high quality specimens of human tissue with or without extensive clinical annotation. Multiple types of organizations have developed to supply human tissues to support biomedical research. These organizations follow different models including the specific models of 1) prospective collection, 2) tissue banking, and 3) tissue collection associated with clinical trials as well as the model of 4) a tissue resource that incorporates features of the other models. These types of organizations devoted to supplying tissues for research have chosen different goals to meet the different tissue and informational needs of the investigators to whom they supply tissue. In order to provide high quality tissues to support research, all models should rely on a strong quality assurance program with extensive quality control of the tissues being provided to support research. In addition to facilities which collect, process, store and provide tissues, the need for a rigorous QA program applies to all resources and infrastructures used to support biomedical research. The UAB Tissue Collection and Banking Facility which provides human tissue to support biomedical research has been functioning and developing since 1979. To our knowledge, similar programs in providing tissues from animals are less developed, but could easily follow the models which UAB and other institutions providing human tissues have established, including the approaches of UAB and others to QA and QC. This manuscript reviews the current concepts of QA and QC in use in organizations supplying tissue to support biomedical research as well as new approaches in QA and QC that have been proposed.
现代生物医学研究需要获得高质量的人体组织标本,有或没有广泛的临床注释。多种类型的组织已经发展为提供人体组织来支持生物医学研究。这些组织遵循不同的模型,包括1)前瞻性收集的特定模型,2)组织库,3)与临床试验相关的组织收集,以及4)结合其他模型特征的组织资源模型。这些致力于为研究提供组织的组织选择了不同的目标,以满足他们提供组织的研究人员的不同组织和信息需求。为了提供高质量的组织来支持研究,所有模型都应该依赖于强有力的质量保证计划,对所提供的组织进行广泛的质量控制,以支持研究。除了收集、处理、储存和提供组织的设施外,严格的质量保证程序也适用于用于支持生物医学研究的所有资源和基础设施。自1979年以来,UAB组织收集和银行设施一直在运作和发展,为生物医学研究提供人体组织支持。据我们所知,提供动物组织的类似项目还不太发达,但可以很容易地遵循UAB和其他机构提供人体组织的模式,包括UAB和其他机构的QA和QC方法。本文回顾了目前在组织中使用的QA和QC概念,以支持生物医学研究,以及已经提出的QA和QC新方法。
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引用次数: 32
An Application of Stream Imaging Technique in the Study of Osmotic Behaviors of Multiple Cells. 流成像技术在多细胞渗透行为研究中的应用。
Pub Date : 2008-06-01 DOI: 10.1089/cpt.2008.0002
Hsiu-Hung Chen, Edward H Lin, Shelly Heimfeld, Dayong Gao

Light microscopy method offers unique abilities for the determination of membrane transport properties of either single or multiple cells. A stream imaging system composed of a microfluidic device, a charge-coupled device camera, and a microscope has been developed to study the osmotic behavior of multiple cells in response toward their extracellular environment. Cells of interest were first mixed with the desired extracellular medium and streamed into a microchannel. The microchannel confines the movement of the cells in a monolayer and allows cells to move along the flow direction only. The cells then pass through a sensing zone where the images of cells were capable of being captured under a microscope. Using mouse dendritic cells (mDCs) as a model system, the membrane transport properties were investigated. The kinetics volume changes of mDCs under various extracellular conditions at room temperature (22°C) were analyzed using a biophysical model to determine water and cryoprotectant transport properties of the cell membrane. This prototype system directly allows us to observe, trace, capture, and store the sample information in terms of number, concentration, dynamic size, or shape for further analyses and documentations. We believe that the system has the potential of being used as a stand-alone equipment, or integrated into a lab-on-a-chip system, or embedded into commercialized instruments.

光学显微镜法为测定单个或多个细胞的膜运输特性提供了独特的能力。本文研制了一种由微流控装置、电荷耦合器件相机和显微镜组成的流成像系统,用于研究多细胞对细胞外环境的渗透行为响应。首先将感兴趣的细胞与所需的细胞外培养基混合,并将其流到微通道中。微通道将细胞的运动限制在一个单层中,并且只允许细胞沿流动方向移动。然后细胞通过一个感应区,在那里细胞的图像可以在显微镜下被捕捉到。以小鼠树突状细胞(mDCs)为模型系统,研究了其膜转运特性。利用生物物理模型分析了室温(22°C)下不同胞外条件下mDCs的动力学体积变化,以确定细胞膜的水和冷冻保护剂运输特性。这个原型系统直接允许我们在数量、浓度、动态大小或形状方面观察、跟踪、捕获和存储样品信息,以便进一步分析和记录。我们相信该系统具有作为独立设备使用的潜力,或集成到芯片实验室系统中,或嵌入到商业化仪器中。
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引用次数: 0
Design and Applications of the National Institute of Standards and Technology's (NIST's) Environmental Specimen Banking Programs 美国国家标准与技术研究院(NIST)环境标本库项目的设计与应用
Pub Date : 2008-04-01 DOI: 10.1089/CPT.2007.0517
R. Pugh, P. Becker, B. Porter, M. Ellisor, A. Moors, S. Wise
ABSTRACT The National Institute of Standards and Technology (NIST) environmental specimen banking system consists of two environmental specimen banks (ESBs): the National Biomonitoring Specimen Bank established in 1979, and the Marine Environmental Specimen Bank established in 2002. Both facilities were specifically designed to store environmental specimens over long periods of time (50–100 years) and in such a way that future researchers could use these specimens to answer questions regarding trends in newly recognized environmental contaminants and verification of past analytical results. The NIST environmental banking system maintains collections of human liver specimens, human blood serum and blood spots, human diet samples, marine sediments, fish tissues, mussels, oysters, marine mammal tissues, and bird eggs and feathers collected as part of several monitoring and research programs supported by the U.S. Government. The NIST environmental banking system emphasizes: (1) carefully designed (and publish...
美国国家标准技术研究院(NIST)环境标本库系统由两个环境标本库(ESBs)组成:1979年建立的国家生物监测标本库和2002年建立的海洋环境标本库。这两个设施都是专门为长期(50-100年)储存环境标本而设计的,这样未来的研究人员就可以使用这些标本来回答有关新发现的环境污染物趋势和验证过去分析结果的问题。NIST环境银行系统保存了人类肝脏标本、人类血清和血斑、人类饮食样本、海洋沉积物、鱼类组织、贻贝、牡蛎、海洋哺乳动物组织、鸟蛋和羽毛的收集,这些收集是美国政府支持的几个监测和研究项目的一部分。NIST环境银行系统强调:(1)精心设计(并发布…
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引用次数: 13
Cryopreservation of Brown Bear Skin Biopsies 棕熊皮肤组织切片的低温保存
Pub Date : 2008-04-01 DOI: 10.1089/CPT.2007.0518
J. N. Caamaño, Aida Rodríguez, M. Muñoz, C. Frutos, C. Díez, E. Gómez
ABSTRACT Genetic resource banks and assisted reproductive technologies support the conservation of endangered or threatened species. In this study we assessed two procedures to cryopreserve skin biopsies from live brown bears. Skin biopsies were taken from six live, anesthetized brown bears. Single biopsies (n = 3) of each animal were cut into small pieces and assigned to one of the three experimental groups: freezing, vitrification, or untreated fresh. There were no differences on cell attachment. However, both freezing and fresh culture allowed for higher cell proliferation (p < 0.05) and less days to reach 70% to 80% confluence (p < 0.03) than vitrification. Skin biopsies from brown bears can be preserved long term, allowing fibroblasts to proliferate in culture. Slow freezing was effective to cryopreserve skin biopsies from brown bears.
遗传资源库和辅助生殖技术支持濒危或受威胁物种的保护。在这项研究中,我们评估了两种冷冻保存活棕熊皮肤活检的方法。对6只麻醉的活棕熊进行了皮肤活检。每只动物的单个活组织切片(n = 3)被切成小块,并分配到三个实验组之一:冷冻,玻璃化或未经处理的新鲜。细胞附着无明显差异。然而,冷冻和新鲜培养都比玻璃化培养具有更高的细胞增殖(p < 0.05)和更短的时间达到70%至80%的融合(p < 0.03)。棕熊的皮肤活检可以长期保存,使成纤维细胞在培养中增殖。慢速冷冻对棕熊皮肤活检组织的冷冻保存是有效的。
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引用次数: 10
ISBER: Best Practices for Repositories and Trends at the Institute for Problems of Cryobiology and Medicine ISBER:低温生物学和医学问题研究所的最佳知识库和趋势实践
Pub Date : 2008-04-01 DOI: 10.1089/CPT.2008.9996
J. Baust
1 WITH THIS ISSUE the Journal begins a partnership with the Institute for Problems of Cryobiology & Cryomedicine of the National Academy of Sciences of the Ukraine, which entails the publication of the abstracts from the annual conference of young scientists. The conference, traditionally titled “Cold in Biology and Medicine,” features the work of post-graduate students and young scientists from a diversity of regional institutions. The two-day conference is held mutually with the UNESCO Chair in Cryobiology, and the reports are published in the Problems of Cryobiology journal. The Institute for Problems of Cryobiology and Cryomedicine of the National Academy of Sciences of the Ukraine was organized in 1972 with two laboratories, the Institute of Low Temperature Physics and Engineering of the National Academy of Sciences of the USSR and the Research and Development Laboratory for Low Temperature Preservation of Bone Marrow and Blood at Kharkov Institute for Physicians Advanced Training. The Institute is structured uniquely to integrate both the physical and biological aspects of low temperature biology. The Institute is the largest in the world focused on “problems in cryobiology and cryomedicine.” It has a staff of 326, including 19 doctors of sciences and 116 candidates of sciences. Dr. Valentin I. Grischenko of the National Academy of Sciences of the Ukraine is the head of the Institute. The major research interests of the varied scientific departments of the Institute include:
本期杂志开始与乌克兰国家科学院低温生物学和低温医学问题研究所合作,发表青年科学家年度会议的摘要。该会议传统上以“生物学和医学中的寒冷”为主题,以来自不同地区机构的研究生和年轻科学家的工作为特色。为期两天的会议与联合国教科文组织低温生物学主席共同举行,报告发表在《低温生物学问题》杂志上。乌克兰国家科学院低温生物学和低温医学问题研究所成立于1972年,有两个实验室,即苏联国家科学院低温物理和工程研究所和哈尔科夫医生高级培训研究所的骨髓和血液低温保存研究和发展实验室。该研究所的结构独特,将低温生物学的物理和生物方面结合起来。该研究所是世界上最大的专注于“低温生物学和低温医学问题”的研究所。现有教职工326人,其中理学博士19人,理学研究生116人。乌克兰国家科学院的Valentin I. Grischenko博士是该研究所的负责人。研究所各科学部门的主要研究兴趣包括:
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引用次数: 23
Quantitative Analysis of Epstein-Barr Virus Supernatant by Real-Time PCR Assay 实时荧光定量PCR法定量分析eb病毒上清液
Pub Date : 2008-04-01 DOI: 10.1089/CPT.2007.0515
Karen Fecenko-Tacka, Laura Schina, C. Beiswanger
ABSTRACT Transformation of B cells by Epstein-Barr Virus (EBV) is used by the CCR at Coriell Institute for Medical Research to produce renewable cell lines and DNA to further genomic and proteomic studies of inherited and complex diseases alike. Optimal and efficient transformation requires an accurate assessment of the titer of the virus in each virus preparation. However, current methods to determine EBV titer assess transformation efficiency using large-scale biological assays ending in the establishment of lymphoblastoid cell lines (LCLs). This method determines the virus dilution capable of producing LCL outgrowth but does not determine virion number and optimal dilution will vary with the preparation. Therefore, we developed a real-time PCR method to detect and quantify EBV DNA. In addition to quantifying the titer of the viral supernatants, we evaluated both the biological activity of the viral dilutions as measured by LCL outgrowth and the use of diluted EBV viral stocks to transform previously fr...
eb病毒(EBV)转化B细胞被科里尔医学研究所的CCR用于产生可再生细胞系和DNA,以进一步研究遗传和复杂疾病的基因组和蛋白质组学。最佳和有效的转化需要准确评估每种病毒制剂中的病毒滴度。然而,目前测定EBV滴度的方法是通过大规模的生物试验来评估转化效率,最终建立淋巴母细胞样细胞系(LCLs)。该方法确定能够产生LCL产物的病毒稀释度,但不确定病毒粒子数,最佳稀释度随制剂而变化。因此,我们开发了一种实时PCR方法来检测和定量EBV DNA。除了量化病毒上清液的滴度外,我们还评估了通过LCL生长测量的病毒稀释物的生物活性,以及使用稀释的EBV病毒库转化先前的病毒。
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引用次数: 3
Approaches to Improving Biospecimen Quality Through Research 通过研究提高生物标本质量的方法
Pub Date : 2007-12-01 DOI: 10.1089/CPT.2007.9986
J. Vaught, M. Cosentino
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引用次数: 0
The Use of Compressor Cycle Patterns: The Ability to Predict Freezer Failure 压缩机循环模式的使用:预测冷冻机故障的能力
Pub Date : 2007-12-01 DOI: 10.1089/CPT.2007.0510
K. Groover, K. Drew, J. Franke
Biorepositories are tasked with the care and storage of priceless collections of biological specimens. Critical to the success of biorepository operations is the safe, secure, viable storage of the specimens entrusted to its care. The primary means by which this is accomplished is to ensure proper function of ultralow freezers. For a large biorepository this involves the tracking and monitoring of hundreds of freezers. Biorepository procedures typically require recording of the temperature of each freezer on a daily basis. At the Central Repository of the National Cancer Institute in Frederick, Maryland, temperature monitoring has been taken one step further. New procedures utilize the in-house 24-h temperature monitoring system to produce daily printouts of the fluctuation of temperature with time. These graphs are reviewed, and based upon an understanding of freezer compressor cycles are used to identify potential problems with freezer function. These new procedures, which can be used to predict failure...
生物储存库的任务是照料和储存无价的生物标本。生物库操作成功的关键是安全、可靠、可行地储存委托其照料的标本。实现这一目标的主要手段是确保低温冷冻机的正常运行。对于一个大型生物储存库来说,这涉及到对数百个冷冻库的跟踪和监控。生物储存程序通常需要每天记录每个冷冻室的温度。在马里兰州弗雷德里克的国家癌症研究所中央储存库,温度监测又向前迈进了一步。新程序利用内部24小时温度监测系统,每天打印温度随时间波动的输出。这些图表进行了审查,并基于对冷冻机压缩机循环的理解,用于识别冷冻机功能的潜在问题。这些可以用来预测故障的新程序……
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引用次数: 1
Modifications to a Standard Buccal Collection Protocol: Effects on Human DNA Yield 对标准口腔采集方案的修改:对人类DNA产率的影响
Pub Date : 2007-12-01 DOI: 10.1089/CPT.2007.0512
Wen Shao, M. García-Closas, J. Alguacil, N. Rothman, A. Schatzkin, J. Vaught, A. Sigurdson, M. Cosentino
A standard mouthwash protocol (a single 10-mL swish of mouthwash for 45 sec) was modified in an attempt to increase the amount of human buccal cell DNA per collection and to reduce the percentage of low yielding human DNA collections (<4 μg). A group of 22 healthy individuals donated a buccal sample each week for several weeks according to the standard protocol without or with one of the following modifications: (1) decreasing the volume of mouthwash, (2) having participants externally rub or not rub their cheeks before donating a specimen, (3) donating two consecutive specimens at each collection, (4) substituting saline for mouthwash, and (5) having individuals expectorate into mouthwash. There was no significant difference in the amount of human DNA collected when 10 mL or 5 mL of mouthwash was used. Externally rubbing cheeks before donating did not significantly alter the amount of human DNA collected, regardless of whether it was one or two donations. Addition of a second donation resulted in 24% to ...
修改标准漱口方案(单次10毫升漱口水45秒),试图增加每次收集的人颊细胞DNA的数量,并减少低产量的人DNA收集的百分比(<4 μg)。一组22名健康个体根据标准方案每周捐献口腔样本,持续数周,不做或不做以下修改:(1)减少漱口水的量,(2)在捐献样本前让参与者从外部摩擦或不摩擦脸颊,(3)每次采集时连续捐献两个样本,(4)用生理盐水代替漱口水,(5)让个体将唾液放入漱口水中。当使用10毫升或5毫升漱口水时,收集的人类DNA数量没有显着差异。不管是一次还是两次捐献,捐献前在脸颊外摩擦都不会显著改变采集到的人类DNA的数量。加上第二笔捐款,使…
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引用次数: 0
Biospecimen Research: Enabling Translational Medicine 生物标本研究:促进转化医学
Pub Date : 2007-12-01 DOI: 10.1089/CPT.2007.9985
J. Baust
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引用次数: 1
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Cell Preservation Technology
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