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Effects of yucca extract on dynamic nutrient change, greenhouse gas emissions, and microbial community during chicken manure storage 丝兰提取物对鸡粪贮存过程中养分动态变化、温室气体排放和微生物群落的影响
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-29 DOI: 10.1186/s40538-025-00874-z
Zhipeng Wu, Simin Liu, Yaqi Li, Siyu Fan, Shuaixin Tian, Guoyan Zhang, Yichun Liu, Hongliang Wang

Liquid manure storage contributes substantially to environmental emissions within manure management systems. This study evaluated Yucca schidigera extract (YE) as a sustainable microbial modulator for mitigating ammonia (NH3) and greenhouse gas emissions during 60-day storage of liquid chicken manure. Three treatments were established: no additive (control, CK), 0.1% biological deodorant (positive control, BF), and 0.5% YE. The results demonstrated that both YE and BF significantly reduced electrical conductivity (EC) (YE: 38.35%; BF: 34.51%) and ammonium nitrogen (NH4⁺-N) content (YE: 14.15%; BF: 20.21%) relative to CK, while elevating the C/N ratio by 9.97% (YE) and 18.63% (BF). Total nitrogen decreased by 23.88% (YE) and 26.34% (BF) from initial levels. In addition, the cumulative NH3 emissions of YE and BF decreased significantly by 20.18% and 20.12% compared to CK. However, YE increased CH₄ emissions by 17.43%, elevating global warming potential, whereas BF exhibited no significant effect on CH4. Neither additive influenced CO2 or N2O emissions. Microbial analysis revealed YE enriched Firmicutes (e.g., Fermentimonas), while BF enhanced Actinobacteriota (e.g., Corynebacterium) and Proteobacteria. Both additives suppressed ammonia-producing bacteria (e.g., Proteiniphilum). Mantel tests analysis indicated NH3 emissions correlated positively with EC and NH4⁺-N (P < 0.01), while CH4 emissions correlated with organic matter (OM) content (P < 0.05). These findings elucidate the microbial mechanisms of YE in mitigating the NH3 emission during liquid manure storage, whereas YE may induce trade-offs in CH4 emission. In the future, the formulation of compound plant-derived additives will be necessary for the synergetic abatement of carbon and nitrogen gases.

Graphical Abstract

液体粪肥储存对粪肥管理系统中的环境排放有很大贡献。本研究评价了丝兰提取物(Yucca schidigera extract, YE)作为一种可持续性微生物调节剂,在液态鸡粪贮存60 d期间减少氨(NH3)和温室气体的排放。建立了3个处理:无添加剂(对照,CK)、0.1%生物除臭剂(阳性对照,BF)和0.5% YE。结果表明,与CK相比,YE和BF均显著降低了电导率(EC) (YE: 38.35%, BF: 34.51%)和铵态氮(NH4 + -N)含量(YE: 14.15%, BF: 20.21%), C/N比分别提高了9.97% (YE)和18.63% (BF)。总氮比初始水平分别下降23.88% (YE)和26.34% (BF)。此外,与对照相比,YE和BF的累积NH3排放量显著下降20.18%和20.12%。然而,YE增加了17.43%的CH4排放量,提高了全球变暖潜势,而BF对CH4没有显著影响。两种添加剂都不影响CO2或N2O的排放。微生物分析显示,YE富集了厚壁菌门(如发酵单胞菌),而BF增强了放线菌门(如棒状杆菌)和变形菌门。两种添加剂都抑制产氨细菌(如嗜蛋白菌)。Mantel测试分析表明,NH3排放量与EC、NH4 + -N呈正相关(P < 0.01), CH4排放量与有机质(OM)含量呈正相关(P < 0.05)。这些发现阐明了YE在减少液肥储存过程中NH3排放的微生物机制,而YE可能导致CH4排放的权衡。在未来,复合植物衍生添加剂的配方将是必要的,以协同减排的碳和氮气体。图形抽象
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引用次数: 0
Structural characterization and bioactivity of a novel α-(1 → 4)-glucan from Lentinus edodes with immunomodulatory and gut microbiota-modulating potential 具有免疫调节和肠道微生物调节潜力的香菇α-(1→4)-葡聚糖的结构表征和生物活性
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-27 DOI: 10.1186/s40538-025-00876-x
Xingbo Bian, Xuefeng Bian, Xiaohang Yang, Yan Zhao, Xue Zhao, Xin Sun, Xialin Sun
<div><h3>Background</h3><p><i>Lentinus edodes</i>, commonly known as shiitake mushrooms, is widely cultivated for its nutritional and medicinal properties. It has been traditionally used for enhancing immune function, reducing inflammation, and providing antioxidant protection. Among its bioactive components, polysaccharides, particularly β-glucans, have attracted considerable attention for their anti-inflammatory, immunomodulatory, and anticancer effects. However, less is known about α-glucans, which differ in structure and biological activity from β-glucans. This study aims to isolate and characterize an α-glucan from <i>L. edodes</i> (LEP1), investigating its effects on lipopolysaccharide (LPS)-induced systemic inflammation and its potential to modulate gut microbiota in mice.</p><h3>Methods</h3><p>Crude polysaccharides were extracted from <i>L. edodes</i> and purified to obtain LEP1. LEP1 was characterized using various analytical techniques, including scanning electron microscopy (SEM), molecular weight determination, and nuclear magnetic resonance (NMR) analysis. The effects of LEP1 were evaluated in a mouse model of LPS-induced systemic inflammation. Mice were treated with low- and high-doses of LEP1, and various parameters such as body weight, organ indices, and histopathological changes were assessed. The levels of inflammatory cytokines and oxidative stress markers were analyzed, and gut microbiota composition was studied using 16S ribosomal RNA (rRNA) sequencing.</p><h3>Results</h3><p>LEP1 significantly alleviated LPS-induced weight loss, reduced organ atrophy, and improved colon length. Treatment with LEP1 reduced pro-inflammatory cytokines [interleukin (IL)-1β, IL-6, and tumor necrosis factor (TNF)-α] and restored antioxidant enzyme activities [superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GPx)] in liver and colon tissues. Histopathological analysis showed that LEP1 alleviated liver and colon damage caused by LPS, including inflammation and epithelial disruption. LEP1 inhibited the activation of nuclear factor kappa-light-chain enhancer of activated B cells (NF-κB) and NLR family pyrin domain containing 3 (NLRP3) inflammasome pathways while upregulating the nuclear factor erythroid 2-related factor 2 (Nrf2)/heme oxygenase-1 (HO-1) antioxidant pathway. In addition, LEP1 reshaped the gut microbiota by increasing beneficial bacteria, such as <i>Lactobacillus</i> and <i>Allobaculum</i>, while decreasing harmful taxa such as <i>Escherichia-Shigella</i>.</p><h3>Conclusions</h3><p>LEP1, an α-glucan derived from <i>L. edodes</i>, exhibits significant anti-inflammatory and antioxidant effects in LPS-induced mice, partly through the modulation of key signaling pathways, such as NF-κB/NLRP3 and Nrf2/HO-1. In addition, LEP1 positively affects gut microbiota composition, contributing to its systemic anti-inflammatory effects. These findings indicate that LEP1 shows potential as a functional food ingredient that may mitig
香菇,俗称香菇,因其营养和药用价值而被广泛种植。传统上,它被用于增强免疫功能,减少炎症,提供抗氧化保护。在其生物活性成分中,多糖,特别是β-葡聚糖,因其抗炎、免疫调节和抗癌作用而受到广泛关注。然而,α-葡聚糖在结构和生物活性上与β-葡聚糖不同,对α-葡聚糖的了解较少。本研究旨在从L. edodes (LEP1)中分离α-葡聚糖并对其进行表征,研究其对脂多糖(LPS)诱导的全身炎症的影响及其调节小鼠肠道微生物群的潜力。方法从白羊草中提取粗多糖,纯化得到LEP1。利用扫描电子显微镜(SEM)、分子量测定和核磁共振(NMR)等多种分析技术对LEP1进行了表征。在lps诱导的全身炎症小鼠模型中评估LEP1的作用。用低剂量和高剂量LEP1处理小鼠,并评估各种参数,如体重、器官指数和组织病理学变化。分析炎症因子和氧化应激标志物水平,并利用16S核糖体RNA (rRNA)测序研究肠道微生物群组成。结果slep1显著缓解lps诱导的体重下降,减轻器官萎缩,延长结肠长度。LEP1降低了促炎细胞因子[白细胞介素(IL)-1β、IL-6和肿瘤坏死因子(TNF)-α],恢复了肝脏和结肠组织中抗氧化酶[超氧化物歧化酶(SOD)、过氧化氢酶(CAT)和谷胱甘肽过氧化物酶(GPx)]的活性。组织病理学分析显示,LEP1减轻了LPS引起的肝脏和结肠损伤,包括炎症和上皮破坏。LEP1抑制活化B细胞核因子κB轻链增强子(NF-κB)和NLR家族pyrin domain containing 3 (NLRP3)炎性小体通路的激活,上调核因子红系2相关因子2 (Nrf2)/血红素加氧酶1 (HO-1)抗氧化通路。此外,LEP1通过增加有益菌群,如乳酸杆菌和异源杆菌,同时减少有害菌群,如埃希氏志贺氏菌,重塑肠道微生物群。结论L. edodes衍生的α-葡聚糖slep1在lps诱导小鼠中具有显著的抗炎和抗氧化作用,其机制可能与调节NF-κB/NLRP3和Nrf2/HO-1等关键信号通路有关。此外,LEP1积极影响肠道菌群组成,有助于其全身抗炎作用。这些发现表明,LEP1有可能作为一种功能性食品成分,可能通过调节免疫信号和微生物群组成来减轻炎症和氧化应激。需要进一步的研究来充分了解这些影响的临床意义。图形抽象
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引用次数: 0
Competitive adsorption of phytotoxic exchangeable Al3+ and directed enrichment of microbial community introduced by base ion-enriched additive and industrial by-product enhance soil fertility and maize yield 植物毒性交换性Al3+的竞争性吸附和碱离子富集添加剂和工业副产品引入的微生物群落定向富集提高了土壤肥力和玉米产量
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-24 DOI: 10.1186/s40538-025-00872-1
Debo He, Zhixin Dong, Bo Zhu

Background

Soil acidification seriously threatens sustainable agriculture by promoting phytotoxic exchangeable aluminum ions (Al3+) accumulation and impairing crop growth. However, conventional soil amendments, such as lime and biochar, have known limitations, making the introduction of more sustainable soil amendments crucial for mitigating soil acidification. Furthermore, the biological and chemical mechanisms by which amendments alleviate acidification and enhance soil fertility remain unclear. This impedes the search for more cost-effective soil amendments to rehabilitate infertile acidic soils.

Methods

In this study, pot experiments, microbial sequencing, and molecular modeling calculations were employed to assess the response of soil fertility and maize yield to the combined application of sodium carboxymethylcellulose (CMC) and desulfurized phosphogypsum (DP) in strongly acidic soils, as well as the underlying biological and molecular dynamic mechanisms.

Results

The results indicated that CMC + DP significantly reduced soil exchangeable Al3+ by 78.68–79.60%, while enhancing the base ion concentration by 59.93–102.27% and acid buffering capacity by 46.47–49.55% compared to the control (CK) in strongly acidic soils. Additionally, CMC + DP-amended soil exhibited a 24.47–48.65% increase in photosynthetic rate and a 50.57–155.48% increase in the weight of 100 grains. CMC contributed to Al3+ immobilization and base ion release via competitive electrostatic attraction and complexation of Al3+ on the surface of –COOH and –OH functional groups. CMC + DP application promoted direct enrichment of microbial communities, increasing the abundance of functional microbial taxa, including Acidobacteriota, Gemmatimonadota, and Ascomycota, and soil enzymes related to organic matter decomposition and phosphorus metabolism.

Conclusions

These findings suggest that CMC + DP could be used as a promising strategy to mitigate soil acidification, enhance soil fertility and crop yield, and highlight the synergistic potential of biodegradable polymers and industrial by-products for acidic soil remediation. They enhance our understanding of the synergistic biological and molecular dynamic mechanisms of amendments, mitigating soil acidification and enhancing soil fertility. These findings may help identify more effective soil amendments and application strategies to ensure cropland health and promote sustainable agriculture.

Graphical Abstract

土壤酸化促进植物毒性交换性铝离子(Al3+)积累,影响作物生长,严重威胁农业可持续发展。然而,传统的土壤改良剂,如石灰和生物炭,具有已知的局限性,这使得引入更可持续的土壤改良剂对减轻土壤酸化至关重要。此外,改良剂减轻酸化和提高土壤肥力的生物和化学机制仍不清楚。这阻碍了寻找更具成本效益的土壤改良剂来恢复贫瘠的酸性土壤。方法采用盆栽试验、微生物测序和分子模拟计算等方法,研究了强酸性土壤中羧甲基纤维素钠(CMC)和脱硫磷石膏(DP)联合施用对土壤肥力和玉米产量的影响,以及潜在的生物学和分子动力学机制。结果在强酸性土壤中,与对照(CK)相比,CMC + DP显著降低土壤交换性Al3+ 78.68 ~ 79.60%,碱离子浓度提高59.93 ~ 102.27%,酸缓冲能力提高46.47 ~ 49.55%。CMC + dp处理土壤光合速率提高24.47 ~ 48.65%,百粒重提高50.57 ~ 155.48%。CMC通过竞争性静电吸引和Al3+在-COOH和-OH官能团表面的络合作用,促进了Al3+的固定和碱离子的释放。CMC + DP的施用促进了微生物群落的直接富集,增加了酸性菌门、双胞菌门和子囊菌门等功能微生物类群的丰度,以及与有机质分解和磷代谢有关的土壤酶的丰度。结论CMC + DP可作为缓解土壤酸化、提高土壤肥力和作物产量的一种有前景的策略,并突出了生物可降解聚合物和工业副产物在酸性土壤修复中的协同潜力。它们增强了我们对改良剂的协同生物学和分子动力学机制的理解,减轻了土壤酸化,提高了土壤肥力。这些发现可能有助于确定更有效的土壤改良剂和施用策略,以确保农田健康和促进可持续农业。图形抽象
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引用次数: 0
Application of plasma-activated fog (PAF) in postharvest treatments to reduce spoilage by fungal pathogens and pesticide residues in fruits 等离子体活化雾(PAF)在果实采后处理中的应用,以减少真菌病原体和农药残留对果实的破坏
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-22 DOI: 10.1186/s40538-025-00865-0
Domenico Aceto, Palma Rosa Rotondo, Sebastiano Laera, Marianna Ambrico, Crescenza Dongiovanni, Giorgio Dilecce, Francesco Faretra, Paolo Francesco Ambrico, Rita Milvia De Miccolis Angelini

Background

During storage, fruits and vegetables are susceptible to the pathogens responsible for postharvest decay. Various tools are available to manage these issues, but not all are environmentally sustainable. Low-temperature plasma (LTP) has garnered significant attention among the most promising and eco-friendly solutions. LTP can be applied directly or indirectly, offering versatile applications. One notable indirect application is the utilization of plasma-activated water (PAW). In this study, we investigated the efficacy of an aerosol made by droplets of water nebulized by the effluent gases of a plasma discharge as a delivery method of PAW to substrates. We named this novel application, reported for the first time, plasma-activated fog (PAF). In this work, it was tested as a new alternative technology for fruit decontamination against postharvest fungal pathogens and pesticide residues.

Results

PAF was generated via volume dielectric barrier discharge (VDBD) in a jet-like configuration and was applied to evaluate the in vitro effects on the conidial germination of major fungal postharvest pathogens, such as Alternaria alternata, Aspergillus carbonarius, Botrytis cinerea, Cladosporium sp., Monilinia fructicola, Penicillium italicum, Penicillium expansum and Rhizopus sp. Differences in fungal sensitivity to PAF were recorded, with A. alternata showing the lowest sensitivity to treatments. For most species, complete spore inhibition was obtained after 3–5 min of exposure. The efficacy of PAF against fungal rot was assessed on table grapes and strawberries, revealing a reduction in the percentage of rotted fruits exposed to 10 min of treatment, ranging from 45 to 80% on table grapes and from 52 to 74% on strawberries. PAF treatments also reduced pesticide residues on grape bunches and strawberry fruits, with various results depending on the active ingredient, with reductions of up to 96% for abamectin among insecticides and acaricides, and up to 38% for the fungicide fenhexamid.

Conclusions

The results obtained in the present work have the potential to refine and optimize PAF treatment conditions for the antimicrobial decontamination of plant products.

Graphical abstract

在储存过程中,水果和蔬菜很容易受到导致采后腐烂的病原体的影响。有各种各样的工具可以用来管理这些问题,但并不是所有的工具都是环境可持续的。低温等离子体(LTP)在最有前途和最环保的解决方案中引起了极大的关注。LTP可以直接或间接应用,从而提供多用途的应用程序。一个值得注意的间接应用是等离子体活化水(PAW)的利用。在这项研究中,我们研究了由等离子体放电排出气体雾化的水滴制成的气溶胶作为PAW到基材的递送方法的功效。我们将这一首次报道的新应用命名为等离子体活化雾(PAF)。本研究将其作为水果采后真菌病原体和农药残留净化的新替代技术进行了试验。结果采用体积介质阻挡放电(VDBD)以射流形式产生PAF,评价了PAF对采后主要真菌病原菌(交替孢霉、炭黑曲霉、灰霉病菌、枝孢霉、果霉菌、意大利青霉、膨化青霉和根霉)孢子萌发的体外影响,并记录了不同真菌对PAF的敏感性差异。对处理的敏感性最低。对于大多数菌种,在3-5分钟的暴露后获得完全的孢子抑制。在鲜食葡萄和草莓上评估了PAF抗真菌腐烂的功效,结果显示,在10分钟的处理下,鲜食葡萄的腐烂率从45%到80%不等,草莓的腐烂率从52%到74%不等。PAF处理还减少了葡萄串和草莓果实上的农药残留,根据活性成分的不同,结果也有所不同,在杀虫剂和杀螨剂中,阿维菌素的减少率高达96%,杀菌剂芬甲胺的减少率高达38%。结论本研究结果可为植物产品抗菌去污的PAF处理条件的优化提供参考。图形抽象
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引用次数: 0
Propylene glycol-based green extraction of polyphenols from industrial hemp stems: process optimization and bioactivity assessment 丙二醇基绿色提取工业大麻茎中多酚:工艺优化及生物活性评价
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-21 DOI: 10.1186/s40538-025-00870-3
Hla Myo, Nuntawat Khat-udomkiri, Pornpat Sam-ang, Anuchit Phanumartwiwath

Industrial hemp (Cannabis sativa L. subsp. sativa) is a multipurpose crop widely cultivated for its fibers, seeds, and oils. Despite the common use of hemp stems for fiber production in textiles and construction, they are frequently discarded as agricultural waste. This study aimed to enhance the utilization of hemp stems through the optimization of ultrasound-assisted extraction (UAE) employing aqueous propylene glycol solvent system as the extraction solvent, guided by Box–Behnken design (BBD). The optimal extraction parameters—an extraction duration of 30 min, a solvent–solute ratio of 28.25 mL/g, and a PG concentration of 32.72%—resulted in a hemp stem extract (HUPG) enriched with bioactive constituents exhibiting significant antioxidant activity. Following analysis by LC–QTOF–MS/MS, a total of 18 phytochemicals were detected, including isofeuric acid, m-coumaric acid, and chelidonic acid. HUPG exhibited antibacterial activity against Staphylococcus aureus, Streptococcus epidermidis, Escherichia coli, and Pseudomonas aeruginosa, and anti-inflammatory effects through 5-lipoxygenase inhibition and NO radical scavenging (1.41 ± 0.38 mg GAE/g). In LPS-induced RAW 264.7 macrophages, HUPG demonstrated inhibitory effect on NO production. Moreover, it enhanced wound closure in HaCaT cells (51.92 ± 6.05% at 10 mg/mL). These findings highlight the promise of HUPG as a sustainable source of bioactive compounds with potential applications in cosmetic and pharmaceutical formulations.

Graphical Abstract

工业大麻(Cannabis sativa L. subsp.)Sativa是一种多用途作物,因其纤维、种子和油脂而被广泛种植。尽管大麻茎通常用于纺织品和建筑中的纤维生产,但它们经常被作为农业废物丢弃。本研究采用Box-Behnken设计(BBD),以丙二醇水溶液为提取溶剂,对超声辅助提取(UAE)工艺进行优化,以提高大麻茎的利用率。在提取时间为30 min、溶剂溶质比为28.25 mL/g、PG浓度为32.72%的条件下,得到的大麻茎提取物具有较强的抗氧化活性。通过LC-QTOF-MS /MS分析,共检测到18种植物化学物质,包括异戊二酸、间香豆酸和chelidonic酸。HUPG对金黄色葡萄球菌、表皮链球菌、大肠杆菌和铜绿假单胞菌均具有抑菌活性,并通过抑制5-脂氧合酶和清除NO自由基(1.41±0.38 mg GAE/g)具有抗炎作用。在lps诱导的RAW 264.7巨噬细胞中,HUPG对NO的产生有抑制作用。此外,在10 mg/mL时,它能促进HaCaT细胞的创面闭合(51.92±6.05%)。这些发现突出了HUPG作为生物活性化合物的可持续来源在化妆品和药物配方中的潜在应用前景。图形抽象
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引用次数: 0
Biochar accelerates straw decomposition and reduces greenhouse gas emissions by driving microbial community dynamics 生物炭通过驱动微生物群落动态,加速秸秆分解,减少温室气体排放
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-21 DOI: 10.1186/s40538-025-00869-w
Shijing Zhang, Geyi Xu, Xiaolin Quan, Xudong Tan, Rongxuan Zhang, Xin Fu, Hua Peng, Si Luo

Background

The rational utilization of agricultural straw is crucial for improving soil fertility and reducing greenhouse gas emissions (GHGs). The purpose of this study was to investigate how rice (RB) and maize (MB) straw-derived biochar, produced at varying pyrolysis temperatures and application rates, regulated straw decomposition and GHGs by reshaping soil microbial communities and physicochemical properties.

Results

Through 90-day incubation experiments, it was found that biochar produced using low temperature (300 °C) at 2.5–5.0% application rates significantly accelerated straw decomposition by 14.94–36.04% and reduced CH₄ and N₂O emissions by up to 37.84–90.26% and 41.60–91.10%, respectively. Application of biochar produced using low-temperature method enhanced the soil organic matter (9.92–29.26%), pH (1.82–11.32%), and soil enzyme activities (cellulase: 7.84–22.90%, β-glucosidase: 49.92–75.32%), while altering microbial communities, especially increasing copiotrophic bacteria (e.g., Proteobacteria, Ascomycota) in rice grown soils linked to rapid decomposition and reducing Ascomycota dominance in maize soil with altering nutrient dynamics due to higher C/N ratios. Path analysis indicated strong biochar–enzyme–decomposition linkages (normalized coefficient: 0.92), emphasizing microbial community structure as a pivotal mediator. In contrast, biochar produced through high pyrolysis temperatures (mentioning the temperature) diminished effectiveness due to higher structural stability and potential limitations in microbial activity.

Conclusions

Our results indicate that application rates of 2.5–5.0% biochar produced through low temperature can effectively balance straw decomposition and GHGs reduction, offering a sustainable approach for straw management in rice and maize cultivation. These findings provide scientific support for optimizing biochar use in agriculture, contributing to improved soil health and climate change mitigation.

Graphical Abstract

农业秸秆的合理利用对提高土壤肥力和减少温室气体排放至关重要。本研究的目的是研究在不同热解温度和施用量下,水稻(RB)和玉米(MB)秸秆衍生生物炭是如何通过重塑土壤微生物群落和理化性质来调节秸秆分解和温室气体排放的。结果通过90 d的培养实验发现,在2.5 ~ 5.0%施用量的低温(300℃)条件下生产的生物炭能显著促进秸秆分解14.94 ~ 36.04%,降低CH₄和N₂O的排放量分别高达37.84 ~ 90.26%和41.60 ~ 91.10%。使用低温法生产的生物炭提高了土壤有机质(9.92-29.26%)、pH(1.82-11.32%)和土壤酶活性(纤维素酶:7.84-22.90%,β-葡萄糖苷酶:49.92-75.32%),同时改变了微生物群落,特别是增加了水稻土壤中的腐殖质细菌(如变形菌门、子囊菌门),这与快速分解有关,并降低了玉米土壤中子囊菌门的优势,这与较高的C/N比改变养分动态有关。通径分析表明,生物炭-酶-分解具有很强的联系(归一化系数:0.92),强调微生物群落结构是关键的中介。相比之下,通过高温热解(以下简称温度)生产的生物炭由于结构稳定性更高,微生物活性可能受到限制,因此其有效性降低。结论施用2.5 ~ 5.0%低温产生物炭可有效平衡秸秆分解和温室气体减排,为水稻和玉米秸秆管理提供了一种可持续的途径。这些发现为优化农业中生物炭的使用提供了科学支持,有助于改善土壤健康和减缓气候变化。图形抽象
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引用次数: 0
Soil derived metabolic profiling and their impact on the root growth in peanuts (Arachis hypogaea L.) 花生土壤代谢谱及其对根系生长的影响
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-15 DOI: 10.1186/s40538-025-00868-x
Lingling Wu, Muhammad J. Umer, Yanbin Hong, Weicai Jin, Zhihui Sun, Shaoxiong Li, Xiaoping Chen, Qing Lu, Yuan Xiao, Hao Liu

Plant growth is intricately regulated by soil ecosystems, where dynamic interactions between plants and soil metabolites shape root development. As critical mediators of these interactions, soil metabolites not only reflect biogeochemical cycling but also directly modulate root morphogenesis by eliciting stimulatory or inhibitory responses. To decode the mechanisms driving peanut (Arachis hypogaea L.) root system development, utilizing UPLC-HRMS we profiled 702 soil specific metabolites across soil samples collected from five different regions. Further 118 differentially expressed metabolites were identified in collected soil samples, and 10 metabolites were selected to validate their function associated with peanut root length phenotype. Through systematic screening, four root promoting metabolites (nicotinamide, carbendazim, vanillic acid, and raffinose) and four phytotoxic compounds (phthalic acid, myristic acid, formononetin, and syringic acid) were identified. Our results showed that the seedlings treated with nicotinamide, carbendazim, vanillic acid, and raffinose promotes root elongation by up to 28.3% as compared to untreated seeds. Whereas, seedlings treated with phthalic acid, myristic acid, formononetin, and syringic acid, suppressed root growth by 56.6%, demonstrating a bimodal inhibition pattern. Dose response assays revealed hierarchical efficacy among these metabolites, with carbendazim and formononetin representing the most potent enhancer and suppressor, respectively. Current findings reveal a causal link between soil metabolite composition and peanut root development, providing a biochemical basis for harnessing soil specific metabolites in precision agriculture.

Graphical Abstract

植物的生长受到土壤生态系统的复杂调控,植物和土壤代谢物之间的动态相互作用决定了根系的发育。土壤代谢物作为这些相互作用的关键介质,不仅反映生物地球化学循环,而且通过引发刺激或抑制反应直接调节根的形态发生。为了了解花生根系发育的机制,我们利用UPLC-HRMS分析了来自5个不同地区的土壤样品中的702种土壤特异性代谢物。在收集的土壤样品中鉴定了118种差异表达代谢物,并选择了10种代谢物来验证它们与花生根长表型相关的功能。通过系统筛选,鉴定出4种促根代谢物(烟酰胺、多菌灵、香草酸、棉子糖)和4种植物毒性化合物(邻苯二甲酸、肉豆酱酸、刺芒柄花素、丁香酸)。结果表明,与未处理的种子相比,经烟酰胺、多菌灵、香草酸和棉子糖处理的幼苗根系伸长率可达28.3%。而邻苯二甲酸、肉豆酱酸、刺芒柄花素和丁香酸处理的幼苗根系生长抑制率为56.6%,表现出双峰抑制模式。剂量反应试验揭示了这些代谢物之间的等级效应,多菌灵和刺芒柄花素分别代表最有效的增强和抑制。目前的研究结果揭示了土壤代谢物组成与花生根系发育之间的因果关系,为在精准农业中利用土壤特定代谢物提供了生化基础。图形抽象
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引用次数: 0
Physicochemical characterization and immune activity of water-extract polysaccharides by stepwise ethanol precipitation from wild Cordyceps sinensis 乙醇分步沉淀法提取野生冬虫夏草水提多糖的理化性质及免疫活性
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-15 DOI: 10.1186/s40538-025-00866-z
Yong Li, Xingmao Yang, Wenjing Yang, Zhiying Bian, Jiawei Fang, Anhui Zhao, Xiuwen Bao, Shuqi Niu, Jing Bai, Yongjun Zheng, Sijing Liu, Jinlin Guo

Cordyceps sinensis is widely utilized in China as an edible and medicinal fungus for the treatment of immunodeficiency-related disorders. Evidence suggests that polysaccharides are the principal bioactive components responsible for its immunostimulatory effects. However, the physicochemical properties, bioactivities, and structure–function relationships of these polysaccharides remain inadequately elucidated. In this study, four distinct crude polysaccharides from wild Cordyceps sinensis (WCP) were isolated using stepwise ethanol precipitation at final concentrations of 20%, 40%, 60%, and 80% (v/v). These fractions were designated as WCP-20, WCP-40, WCP-60, and WCP-80, respectively. Results demonstrated that the molecular weight (MW) of WCP decreased as the ethanol concentration increased. High-MW fractions (WCP-20/-40) exhibited high glucose content, a partially triple-helical structure, levorotation (−), and greater thermal stability. In contrast, the low-MW fractions (WCP-60/-80) were enriched in galactose and mannose, exhibited a higher branching density, and dextrorotation ( +). Furthermore, this study revealed that WCPs activated macrophages by enhancing phagocytosis and stimulating the secretion of nitric oxide and interleukin-1 beta. These immunostimulatory effects were mediated through the MAPK/NF-κB signaling pathway. Specifically, WCP-20 triggered macrophage activation via the ERK/JNK/p65 pathway, with P38/ERK/JNK pathway for WCP-40, P38/ERK/JNK/p65 pathway for WCP-60, and JNK/p65 pathway for WCP-80. Correlation analysis revealed that the immunostimulatory effects of WCPs were closely linked to their monosaccharide composition and secondary structures. These findings established that the physicochemical properties of WCP were critical determinants of precise immune modulation. This study provided a foundational reference for developing precision polysaccharide-based immune-enhancing nutraceuticals.

Graphical Abstract

冬虫夏草在中国被广泛用作食用和药用真菌,用于治疗免疫缺陷相关疾病。有证据表明,多糖是其免疫刺激作用的主要生物活性成分。然而,这些多糖的理化性质、生物活性和结构功能关系尚未得到充分的阐明。以冬虫夏草(WCP)为原料,采用乙醇分步沉淀法,在最终浓度为20%、40%、60%和80% (v/v)的条件下,分离得到4种不同的野生冬虫夏草粗多糖。这些馏分分别被命名为WCP-20、WCP-40、WCP-60和WCP-80。结果表明,WCP的分子量随乙醇浓度的增加而降低。高分子量馏分(WCP-20/-40)表现出高葡萄糖含量、部分三螺旋结构、左旋性(−)和更高的热稳定性。相比之下,低分子量组分(WCP-60/-80)富含半乳糖和甘露糖,具有更高的分支密度和右旋化(+)。此外,本研究还发现WCPs通过增强吞噬和刺激一氧化氮和白细胞介素-1 β的分泌来激活巨噬细胞。这些免疫刺激作用是通过MAPK/NF-κB信号通路介导的。具体来说,WCP-20通过ERK/JNK/p65通路触发巨噬细胞活化,其中WCP-40通过P38/ERK/JNK/ JNK通路,WCP-60通过P38/ERK/JNK/p65通路,WCP-80通过JNK/p65通路。相关分析表明,wcp的免疫刺激作用与其单糖组成和二级结构密切相关。这些发现表明,WCP的物理化学性质是精确免疫调节的关键决定因素。本研究为开发以多糖为基础的精密免疫增强保健品提供了基础参考。图形抽象
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引用次数: 0
Bacillus altitudinis and Bacillus cereus strains improve soil fertility, nutrient acquisition, biomass production, and yield of wheat grown on calcareous soil 高海拔芽孢杆菌和蜡样芽孢杆菌菌株提高土壤肥力、养分获取、生物量生产和小麦产量
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-14 DOI: 10.1186/s40538-025-00854-3
Muhammad Zahid Mumtaz, Rahila Aslam, Lingling Li, Shazmina Ghafoor, Shahbaz Khan, Abbas Muhammad Fahim, Waleed A. A. Alsakkaf, Hayssam M. Ali

Background

Mineral-dissolving rhizobacteria are considered ecological friendly rhizonutrifying agents capable of promoting rhizospheric enzymatic activities, microbial biomass, and nutrient availability even under nutrient-deficient alkaline soil conditions. However, comprehensive studies on their effectiveness in calcareous soil are lacking. The current study hypothesized that beneficial rhizobacteria improve soil biochemical properties in calcareous soil through their impact on enzymatic activities, microbial biomass, and nutrient availability in the rhizosphere.

Methods

Rhizobacterial strains were isolated from wheat rhizosphere and characterized in vitro for their mineral solubilization potential, production of beneficial metabolites, and various enzymatic activities. A pot experiment was conducted to investigate the effect of sole and co-inoculation treatments on wheat growth, grain attributes, nutrient availability in soil and absorption in plants, soil enzymatic activities, and microbial biomass accumulation in wheat rhizosphere under calcareous soil conditions.

Results

The most effective mineral-dissolving rhizobacteria were identified as Bacillus altitudinis (strains SAM1, SAM7, SAM13, and SAM15) and Bacillus cereus (strain SAM9) through 16S rRNA partial gene sequencing. These strains demonstrated the dissolution of insoluble tricalcium phosphate, mica, zinc oxide, and manganese oxide, and promoted nutrient availability in the soil by producing organic acids. Inoculation enhanced wheat growth and grain development by promoting nutrient acquisition and stimulating rhizospheric microbial activity. Both sole and co-inoculation with rhizobacterial strains significantly increased soil enzymatic activities, microbial biomass carbon, nitrogen, and phosphorus, and nutrient availability in the wheat rhizosphere through organic matter decomposition. Among treatments, sole inoculation with B. cereus SAM9 and co-inoculation with B. cereus SAM9 + B. altitudinis SAM13 demonstrated the most dominant increase in wheat growth and grain attributes, nutrient availability in soil and absorption in plants, deposition of microbial biomass, and soil enzymatic activities.

Conclusions

The sole inoculation with B. cereus SAM9 and co-inoculation with B. cereus SAM9 + B. altitudinis SAM13 showed strong potential as bioinoculants for calcareous soils. These strains could be effectively integrated into commercial biofertilizer formulation as sustainable alternatives or supplements to chemical fertilizers, enhancing soil productivity and crop performance.

Graphical Abstract

矿物溶根细菌被认为是生态友好的根营养剂,即使在营养缺乏的碱性土壤条件下,也能促进根际酶活性、微生物生物量和养分有效性。但目前对其在钙质土壤中的有效性还缺乏全面的研究。目前的研究假设,有益的根细菌通过影响根际酶活性、微生物生物量和养分有效性来改善钙质土壤的生化特性。方法从小麦根际分离得到根瘤菌菌株,并对其矿物质溶解能力、有益代谢产物的产生和各种酶活性进行了体外鉴定。通过盆栽试验,研究了钙质土壤条件下单独接种和共接种处理对小麦生长、籽粒性状、土壤养分有效性和植株养分吸收、土壤酶活性和小麦根际微生物生物量积累的影响。结果通过16S rRNA部分基因测序,鉴定出溶矿效果最好的根瘤菌为高原芽孢杆菌(菌株SAM1、SAM7、SAM13和SAM15)和蜡样芽孢杆菌(菌株SAM9)。这些菌株表现出溶解不溶性磷酸三钙、云母、氧化锌和氧化锰的能力,并通过产生有机酸来促进土壤中的养分有效性。接种通过促进养分获取和刺激根际微生物活性来促进小麦生长和籽粒发育。单独接种和共接种根杆菌菌株均显著提高了土壤酶活性、微生物生物量碳、氮、磷以及小麦根际有机质分解的养分有效性。其中,单纯接种蜡样芽孢杆菌SAM9和同时接种蜡样芽孢杆菌SAM9 + B。SAM13在小麦生长和籽粒性状、土壤养分有效性和植物吸收、微生物生物量沉积和土壤酶活性方面表现出最显著的增加。结论单纯接种蜡样芽孢杆菌SAM9和蜡样芽孢杆菌SAM9 + B共接种。SAM13作为钙质土壤的生物接种剂具有很强的潜力。这些菌株可以有效地整合到商业生物肥料配方中,作为化肥的可持续替代品或补充,提高土壤生产力和作物性能。图形抽象
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引用次数: 0
Frequency-dependent maize rotation modulates fungal functions for sustainable soybean production 玉米轮作频率依赖性调节真菌功能,促进大豆可持续生产
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2025-10-14 DOI: 10.1186/s40538-025-00864-1
Ming Yuan, Tianshu Wang, Shuihong Yao, Dongwei Han, Yili Meng, Shuting Yu, Wencheng Lu

Background

Soybean–maize rotation is an effective strategy for addressing the challenges associated with continuous soybean cropping. However, the effects of maize frequency in cropping sequences on soil fungal functions and their associations with soybean yields remain unclear. Through a 12-year field study comparing continuous soybean (CS), maize–soybean (MS), and maize–maize–soybean (MMS) systems, fungal community functions, system-specific taxa, and bacterial–fungal inter-kingdom co-occurrence patterns were analyzed.

Results

In contrast to conventional assumptions, CS enriched symbiotic fungi and suppressed pathogens, suggesting adaptive disease resilience. Integrating maize into soybean cropping systems increased the complexity of bacterial–fungal cross-kingdom co-occurrence networks. While the MS system increased the relative abundances of plant pathogens and saprotrophs, the MMS system stabilized fungal functions and inhibited plant pathogen accumulation. The system-specific taxa identified in the CS and MMS systems included potential plant growth-promoting microbes and were associated with the relative abundances of pathogens and saprotrophic fungi as well as soybean yield. This relationship may represent a critical link between fungal function and soybean production.

Conclusions

These findings indicate that integrating maize into soybean rotations, especially in the MMS system, can stabilize fungal functions and mitigate pathogen accumulation, ultimately increasing soybean yield. These results underscore the importance of tailored crop rotation practices to optimize soil microbial communities for sustainable agricultural production.

Graphical Abstract

大豆-玉米轮作是解决大豆连作挑战的有效策略。然而,玉米种植频率对土壤真菌功能的影响及其与大豆产量的关系尚不清楚。通过对连续大豆(CS)、玉米-大豆(MS)和玉米-玉米-大豆(MMS)系统进行为期12年的田间研究,分析了真菌群落功能、系统特异性分类群和细菌-真菌共生模式。结果与传统假设相反,CS丰富了共生真菌,抑制了病原体,表明具有适应性疾病恢复力。将玉米纳入大豆种植系统增加了细菌-真菌跨界共生网络的复杂性。虽然MS系统增加了植物病原菌和腐生菌的相对丰度,但MMS系统稳定了真菌功能,抑制了植物病原菌的积累。在CS和MMS系统中发现的系统特异性分类群包括潜在的植物生长促进微生物,并且与病原体和腐养真菌的相对丰度以及大豆产量有关。这种关系可能代表了真菌功能与大豆产量之间的关键联系。结论将玉米与大豆轮作结合,特别是在MMS系统中,可以稳定真菌功能,减轻病原菌积累,最终提高大豆产量。这些结果强调了定制轮作实践对优化土壤微生物群落对可持续农业生产的重要性。图形抽象
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引用次数: 0
期刊
Chemical and Biological Technologies in Agriculture
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