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In-silico study of rosmarinic acid roles in inhibiting breast cancer progression. 迷迭香酸抑制乳腺癌进展的计算机研究。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2025-03-01 eCollection Date: 2025-01-01 DOI: 10.37796/2211-8039.1638
Ngakan Putu Krishna Mahayana, Ngurah Bagus Agung Surya Nanda Jayesvara Dwi Sutanegara, Made Dwinanda Prabawa Mahardana, Desak Made Wihandani

Background: Breast cancer is the highest cancer incidence in the world. Chemotherapy is currently one of the main breast cancer treatments besides surgery. It is capable of evolving to become resistant to chemotherapy agents. Chemotherapy also has significant side effects. Rosmarinic acid could become an anti-cancer agent candidate for the treatment of breast cancer, but its molecular mechanism is still unclear.

Aim: This study aimed to clarify the molecular mechanism of rosmarinic acid anti-breast cancer properties via an in-silico study.

Methods: Web-based screening tools such as SwissTargetPrediction, Similarity Ensemble Approach (SEA), and TargetNet were used as initial screening. From web-based screening, potential proteins that interact with rosmarinic acid could be determined. Intersected proteins from 3 web-based screenings were assessed via literature review. We found 11 intersected proteins, and 6 of 11 proteins are involved in breast cancer development and progression. Those 6 proteins are MMP-1, MMP-2, MMP-9, MMP-12, aldose reductase, and M-phase Inducer Phosphatase 2 (CDC25B). Then molecular docking using Autodock 4.6.2 was used in ligand and protein interaction simulation. Those 6 proteins were selected as macromolecules in the docking study.

Results: Based on the docking result, we found that rosmarinic acid can bind MMP-1, MMP2, MMP-9, and MMP-12 active sites. The binding profile of rosmarinic acid with aldose reductase has similarities with other confirmed inhibitors. Docking with CDC25B showed that rosmarinic acid also binds in the same place as cyclin-dependent kinases (CDKs).

Conclusion: The ability of rosmarinic acid to inhibit MMP-1, MMP-2, MMP-9, aldose reductase, and CDC25B activity may underlie how rosmarinic acid is able to inhibit the development of breast cancer.

背景:乳腺癌是世界上发病率最高的癌症。化疗是目前除手术外的主要乳腺癌治疗方法之一。它能够进化到对化疗药物产生抗药性。化疗也有明显的副作用。迷迭香酸有望成为治疗乳腺癌的候选抗癌药物,但其分子机制尚不清楚。目的:通过硅片实验研究迷迭香酸抗乳腺癌的分子机制。方法:采用基于网络的筛选工具SwissTargetPrediction、Similarity Ensemble Approach (SEA)和TargetNet进行初步筛选。通过网络筛选,可以确定与迷迭香酸相互作用的潜在蛋白质。通过文献回顾对3种基于网络筛选的交叉蛋白进行评估。我们发现了11种交叉蛋白,其中6种与乳腺癌的发生和发展有关。这6种蛋白分别是MMP-1、MMP-2、MMP-9、MMP-12、醛糖还原酶和m期诱导磷酸酶2 (CDC25B)。然后利用Autodock 4.6.2软件进行分子对接,模拟配体与蛋白质的相互作用。选择这6个蛋白作为对接研究的大分子。结果:根据对接结果,我们发现迷迭香酸可以结合MMP-1、MMP2、MMP-9和MMP-12活性位点。迷迭香酸与醛糖还原酶的结合谱与其他已证实的抑制剂相似。与CDC25B的对接表明迷迭香酸也与细胞周期蛋白依赖性激酶(CDKs)在相同的位置结合。结论:迷迭香酸抑制MMP-1、MMP-2、MMP-9、醛糖还原酶和CDC25B活性的能力可能是迷迭香酸能够抑制乳腺癌发展的基础。
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引用次数: 0
Acute phantosmia as the first manifestaton of brain metastases in a patient with breast cancer. Case report. 急性幻影症是乳腺癌患者脑转移的第一个表现。病例报告。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2025-03-01 eCollection Date: 2025-01-01 DOI: 10.37796/2211-8039.1641
Georgios I Papageorgiou, Nikolaos Skouteris

Phantosmia belongs to the group of olfactory dysfunctions. It is more commonly described in psychiatric conditions and some cases of viral infections, but it has been also rarely described in cancer patients who develop primary or metastatic central nervous system tumors; the early identification of this symptom in this population is crucial, as it could lead to timely diagnosis and treatment through a multidisciplinary approach. With the current report we present the case of a 60-year-old lady with metastatic breast cancer and without known preexisting brain metastases, who developed acute phantosmia without other neurological deficits; computed tomography of the brain revealed multiple brain metastases, which were attributed to the malignancy, and for which she was effectively treated with whole brain irradiation and antipsychotic as well as anticonvulsant medications. Furthermore, we underline the value of cooperation between the various specialties that could aid in diagnosis and management of this symptomatology. Phantosmia is an extremely rare symptom in cancer patients, and its appearance should alarm physicians to rapidly investigate a possible progression of disease in the central nervous system. Multidisciplinary approach is needed for the optimal management of these patients.

幻视属于嗅觉功能障碍。这种症状在精神疾病和某些病毒感染病例中较为常见,但在罹患原发性或转移性中枢神经系统肿瘤的癌症患者中也很少见;在这类人群中尽早发现这种症状至关重要,因为这可以通过多学科方法进行及时诊断和治疗。在本报告中,我们介绍了一位患有转移性乳腺癌的 60 岁女士的病例,她在没有其他神经功能障碍的情况下出现了急性幻视;脑部计算机断层扫描显示她有多个脑转移灶,这些转移灶与恶性肿瘤有关,她接受了全脑照射、抗精神病药物和抗惊厥药物的有效治疗。此外,我们还强调了各专科之间合作的价值,这有助于诊断和治疗这种症状。幻视是癌症患者极为罕见的症状,它的出现应引起医生的警觉,迅速调查中枢神经系统疾病的可能进展。需要采用多学科方法对这些患者进行最佳治疗。
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引用次数: 0
Estimated levels of glycated albumin and C-reactive protein/total albumin ratio might distinguish prediabetics among the apparently healthy people and predict the vulnerability for development of steatohepatitis and cardiac risk. 糖化白蛋白和c反应蛋白/总白蛋白比值的估计水平可以在表面健康的人群中区分糖尿病前期,并预测脂肪性肝炎和心脏风险的易感性。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2025-03-01 eCollection Date: 2025-01-01 DOI: 10.37796/2211-8039.1639
Rizk S Sarhan, Raafat R Mohammed

Background: Prediabetes precedes Type-2 diabetes development, is characterized by impaired glucose tolerance (IGT) as judged by the 75-g oral glucose tolerance test (75-OGTT) and is associated with higher cardiac risk (CR), dyslipidemia, hepatosteatosis (HS) and cancer.

Aims: The study aimed to determine the distinguishing ability of estimated levels of glycated albumin (GA) and hemoglobin A1c (HbA1c), and serum C-reactive protein (CRP) and serum total albumin (TA) levels for prediabetic out of apparently healthy subjects.

Methods: IGT was diagnosed if fasting blood glucose (FBG) was 100-125 mg/dl and if < 100 mg/dl subject is normal glucose tolerant (NGT). CR, HS and insulin resistance (IR) were suggested if the calculated atherogenic index of plasma (AIP) was >0.1, HS index (HSI) was >36 with high computerized hepatorenal index (HRI) and the homeostasis model assessment of IR (HOMA-IR) score was >2, respectively.

Results: 253 subjects (50.8%) had IGT and were older, more obese and mainly females. IGT had higher GA%, HOMA-IR score, serum CRP and lower TA with high CRP/TA ratio (CAR) than NGT. The frequency of subjects had AIP>0.1, HSI>36 and high HRI was significantly higher among IGT subjects. Statistical analyses defined high GA% and CAR as predictors for IGT, HOMA-IR>36 and AIP score >0.1, while high CAR is the only predictor for HSI score >36 and high HIR score.

Conclusion: Prediabetes is not uncommon and high GA% and CAR might differentiate them among the apparently healthy population, and could predict those at increased risk for IR, HS and at CR.

背景:糖尿病前期先于2型糖尿病发展,其特征是通过75克口服糖耐量试验(75-OGTT)判断糖耐量(IGT)受损,并与较高的心脏风险(CR)、血脂异常、肝纤维化(HS)和癌症相关。目的:本研究旨在确定在表面健康的糖尿病前期受试者中糖化白蛋白(GA)和血红蛋白A1c (HbA1c)、血清c反应蛋白(CRP)和血清总白蛋白(TA)水平的估计区分能力。方法:空腹血糖(FBG)≥100 ~ 125 mg/dl诊断为IGT, < 100 mg/dl为正常糖耐量(NGT)。计算的血浆动脉粥样硬化指数(AIP)为b>.1, HS指数(HSI)为bbbb36,计算机化肝肾指数(HRI)高,IR动态模型评估(HOMA-IR)评分为b>,分别提示CR、HS和胰岛素抵抗(IR)。结果:IGT患者253例(50.8%),年龄较大,肥胖较多,以女性为主。IGT比NGT具有更高的GA%、HOMA-IR评分、血清CRP和更低的TA,且CRP/TA比值(CAR)较高。IGT组AIP值为0.1,HSI值为36,HRI值高的频率显著高于IGT组。统计分析将高GA%和CAR定义为IGT、HOMA-IR bbbb36和AIP评分b>.1的预测因子,而高CAR是HSI评分bbbb36和高HIR评分的唯一预测因子。结论:前驱糖尿病并不少见,高GA%和CAR可在表面健康人群中进行鉴别,并可预测IR、HS和CR的高危人群。
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引用次数: 0
Unveiling role of oncogenic signalling pathways in complicating breast cancer. 揭示致癌信号通路在乳腺癌并发症中的作用。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2025-03-01 eCollection Date: 2025-01-01 DOI: 10.37796/2211-8039.1640
Acharya Balkrishna, Sagar Kumar, Rohan Malik, Kuldeep Singh Mehra, Hariom Chaturvedi, Okeshwar, Rashmi Mittal

Heterogeneous nature of breast cancer has significantly affected the overall survival, disease free survival and progression free survival amongst the diseased individuals. Metastasis of cancerous cells to distant sites including bone, lungs, liver, lymph node and others have further exhilarated the adverse effects. However, ER, PR and HER-2 are responsible for normal physiological development of women but in altered conditions they may act as initiator or progressor and so far 5 subtypes of disease have been identified. Alteration of pro-survival, pro-proliferative and anti-apoptotic pathways including JAK/STAT, MAPK, PI3K/AkT/mTOR, NF-κB, BCL2 and several others have induced oncogenic events including epithelial-mesenchymal transition, intra-vasation, extra-vasation and many more. Although several US-FDA approved drugs are available in market to target above mentioned signalling pathways but issues of resistance, side effects have restricted their efficacy. The present review article aims to highlight diverse molecular subtypes and the signalling pathways involved in complicating the disease along with the US-FDA approved drugs to target them. Potential herbal medicine to target the disease have also been emphasized that can be used either as mono-therapeutic approach or in combination with conventional therapeutic regimens to target breast cancer.

乳腺癌的异质性极大地影响了患者的总生存期、无病生存期和无进展生存期。癌细胞向远处转移,包括骨、肺、肝、淋巴结等,进一步加剧了不良影响。然而,ER、PR 和 HER-2 负责女性的正常生理发育,但在发生改变的情况下,它们可能充当始作俑者或进展者的角色,迄今已发现 5 种疾病亚型。包括 JAK/STAT、MAPK、PI3K/AkT/mTOR、NF-κB、BCL2 等在内的促生存、促增殖和抗凋亡通路的改变诱发了致癌事件,包括上皮-间质转化、血管内、血管外等。虽然市场上有几种美国食品及药物管理局批准的针对上述信号通路的药物,但耐药性、副作用等问题限制了它们的疗效。本综述文章旨在重点介绍导致该病复杂化的各种分子亚型和信号通路,以及美国食品及药物管理局批准的针对这些亚型和通路的药物。文章还强调了针对该疾病的潜在草药,这些草药既可作为单一疗法,也可与针对乳腺癌的常规疗法相结合。
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引用次数: 0
Plasma levels of miR-21b and miR-146a can discriminate rheumatoid arthritis diagnosis and severity. 血浆miR-21b和miR-146a水平可以区分类风湿关节炎的诊断和严重程度。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2025-03-01 eCollection Date: 2025-01-01 DOI: 10.37796/2211-8039.1637
Rizk S Sarhan, Amr M El-Hammady, Yasmin M Marei, Sania K Elwia, Doaa M Ismail, Emtethal A S Ahmed

Objectives: This study tried to examine the ability of the estimated plasma gene-expression levels (PGEL) of microRNA (miR)-146a and miR-21b to distinguish patients with early rheumatoid arthritis (RA) out of arthritis patients who did not fulfill the diagnostic spectrum of either RA or osteoarthritis (OA); the diagnostic Gray-Zone (GZ).

Patients & methods: Enrolled patients underwent full diagnostic workup and were categorized as highseropositive and fulfilled the diagnostic spectrum for RA (RA-group), seronegative and fulfilling the diagnostic spectrum of OA (OA-group) and low-seropositive or seronegative patients who did not fulfill diagnostic criteria of RA or OA (GZ-group). Blood samples were obtained for quantification of PGEL of miR-146a and miR-21-b using the quantitative Reverse-transcriptase polymerase chain reaction and results were related to patients' seropositivity and clinical data.

Results: The mean fold change of PGEL of miR-146a and miR-21b was significantly higher in patients than in control samples, in samples of high-seropositive patients than in other samples, and in samples of low-seropositive than in seronegative patients. Both markers showed a positive significant correlation with Disease Activity Score-28 for RA-activity and seropositivity. Using the ROC curve analysis, the PGEL of both microRNAs could identify high-seropositive among the studied arthritis patients, but Regression Analysis defined high PGEL of miR-146a as the most significant predictor to identify RA patients and predict their disease activity. Statistical analyses defined miR-146a as the significant parameter that could differentiate between early RA and OA patients among GZ patients.

Conclusion: Early arthritis that does not fulfill the diagnostic spectrum of a certain type of arthritis is not uncommon and challenges therapeutic decision-making. The estimated PGEL of MicroRNA-146a might enlighten this gray diagnostic zone and allow differentiation between patients with early RA and early OA, and help to stratify RA patients according to disease activity and severity.

目的:本研究试图检验microRNA (miR)-146a和miR-21b的估计血浆基因表达水平(PGEL)区分早期类风湿关节炎(RA)患者和不符合RA或骨关节炎(OA)诊断谱的关节炎患者的能力;诊断灰色地带(GZ)。患者和方法:纳入的患者进行全面的诊断检查,分为高血清阳性且符合RA诊断谱的患者(RA-组)、血清阴性且符合OA诊断谱的患者(OA组)和低血清阳性或血清阴性但不符合RA或OA诊断谱的患者(gz组)。采集血样,采用定量逆转录酶聚合酶链反应定量检测miR-146a和miR-21-b的PGEL,结果与患者血清阳性及临床资料相关。结果:miR-146a和miR-21b PGEL的平均折叠变化在患者中显著高于对照样本,在高血清阳性患者样本中显著高于其他样本,在低血清阳性样本中显著高于血清阴性样本。两种标志物均与疾病活动评分-28的ra活性和血清阳性呈正相关。通过ROC曲线分析,两种microrna的PGEL均可识别所研究的关节炎患者的高血清阳性,但回归分析认为miR-146a的高PGEL是识别RA患者并预测其疾病活动性的最显著预测因子。统计学分析认为miR-146a是区分GZ患者早期RA和OA患者的重要参数。结论:早期关节炎不符合某种类型关节炎的诊断谱并不罕见,这对治疗决策提出了挑战。估计的MicroRNA-146a PGEL可能会照亮这一灰色诊断区,使早期RA和早期OA患者能够区分,并有助于根据疾病活动性和严重程度对RA患者进行分层。
{"title":"Plasma levels of miR-21b and miR-146a can discriminate rheumatoid arthritis diagnosis and severity.","authors":"Rizk S Sarhan, Amr M El-Hammady, Yasmin M Marei, Sania K Elwia, Doaa M Ismail, Emtethal A S Ahmed","doi":"10.37796/2211-8039.1637","DOIUrl":"10.37796/2211-8039.1637","url":null,"abstract":"<p><strong>Objectives: </strong>This study tried to examine the ability of the estimated plasma gene-expression levels (PGEL) of microRNA (miR)-146a and miR-21b to distinguish patients with early rheumatoid arthritis (RA) out of arthritis patients who did not fulfill the diagnostic spectrum of either RA or osteoarthritis (OA); the diagnostic Gray-Zone (GZ).</p><p><strong>Patients & methods: </strong>Enrolled patients underwent full diagnostic workup and were categorized as highseropositive and fulfilled the diagnostic spectrum for RA (RA-group), seronegative and fulfilling the diagnostic spectrum of OA (OA-group) and low-seropositive or seronegative patients who did not fulfill diagnostic criteria of RA or OA (GZ-group). Blood samples were obtained for quantification of PGEL of miR-146a and miR-21-b using the quantitative Reverse-transcriptase polymerase chain reaction and results were related to patients' seropositivity and clinical data.</p><p><strong>Results: </strong>The mean fold change of PGEL of miR-146a and miR-21b was significantly higher in patients than in control samples, in samples of high-seropositive patients than in other samples, and in samples of low-seropositive than in seronegative patients. Both markers showed a positive significant correlation with Disease Activity Score-28 for RA-activity and seropositivity. Using the ROC curve analysis, the PGEL of both microRNAs could identify high-seropositive among the studied arthritis patients, but Regression Analysis defined high PGEL of miR-146a as the most significant predictor to identify RA patients and predict their disease activity. Statistical analyses defined miR-146a as the significant parameter that could differentiate between early RA and OA patients among GZ patients.</p><p><strong>Conclusion: </strong>Early arthritis that does not fulfill the diagnostic spectrum of a certain type of arthritis is not uncommon and challenges therapeutic decision-making. The estimated PGEL of MicroRNA-146a might enlighten this gray diagnostic zone and allow differentiation between patients with early RA and early OA, and help to stratify RA patients according to disease activity and severity.</p>","PeriodicalId":51650,"journal":{"name":"BioMedicine-Taiwan","volume":"15 1","pages":"30-41"},"PeriodicalIF":2.1,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11959981/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143774848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Distal femur fractures: The use of a fibular strut allograft with dual locking plates allows for early weight bearing. 股骨远端骨折:使用带双锁定钢板的腓骨支撑异体移植物允许早期负重。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2025-03-01 eCollection Date: 2025-01-01 DOI: 10.37796/2211-8039.1642
Brian R K Chee, Chenghan Wu, Abhjeet A Salunke, Yongsheng Chen

Introduction: Distal femur fractures result in high morbidity and mortality - comparable to that of hip fractures. The commonly used surgical fixation techniques today, locked plating and intramedullary nailing, have shown high postoperative complication rates. Thus, many surgeons temporarily keep patients non-weight bearing in the early postoperative stage. Increased time to ambulation after surgery is known to increase systemic complications in patients. We aim to investigate if an augmented fixation technique involving the use of a fibular strut allograft with dual locking plates helps to allow early mobilization postoperatively without adverse outcomes.

Methods: Five geriatric patients (four female, one male) with distal femur fractures (native or periprosthetic) were treated in our institution with the aforementioned technique, and were allowed early postoperative weight-bearing. These patients were followed up for postoperative outcomes. The primary outcomes studied were non union, implant failure and wound complications. Secondary outcomes studied include time to union, and Sander's functional score.

Results: There were no cases of non-union, implant failure or wound related infection. All patients achieved radiological union (mean = 12.6 weeks). Using Sander's functional scoring, two patients achieved excellent, two achieved good and one had fair outcomes. All patients were followed up for at least 6 months after operation.

Conclusion: Our method of augmented fixation with fibular strut allografts potentially allows for early weight bearing without adverse outcomes. Further studies with larger sample sizes are required to validate our findings.

股骨远端骨折导致高发病率和死亡率-与髋部骨折相当。目前常用的手术固定技术,锁定钢板和髓内钉,术后并发症发生率高。因此,许多外科医生在术后早期暂时让患者不负重。术后活动时间增加会增加患者的全身并发症。我们的目的是研究增强固定技术是否包括使用带双锁定钢板的腓骨支撑异体移植物有助于术后早期活动而无不良后果。方法:5例老年患者(4女1男)股骨远端骨折(原生或假体周围)在我院接受上述技术治疗,并允许术后早期负重。对这些患者进行术后随访。研究的主要结果是不愈合、种植体失败和伤口并发症。次要结局包括愈合时间和Sander功能评分。结果:无骨不连、种植体失败或创面相关感染病例。所有患者均实现放射愈合(平均12.6周)。使用Sander功能评分,两名患者达到优秀,两名达到良好,一名达到一般结果。所有患者术后随访至少6个月。结论:我们采用同种异体腓骨支架增强固定的方法有可能使早期负重无不良后果。需要更大样本量的进一步研究来验证我们的发现。
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引用次数: 0
Mini-review of clinical data service platforms in the era of artificial intelligence: A case study of the iHi data platform. 人工智能时代临床数据服务平台小回顾——以iHi数据平台为例
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2025-03-01 eCollection Date: 2025-01-01 DOI: 10.37796/2211-8039.1643
Yu-Ting Lin, Ya-Chi Lin, Hung-Lin Chen, Che-Chen Lin, Min-Yen Wu, Sheng-Hsuan Chen, Zi-Han Lin, Yi-Ching Chang, Chuan-Hu Sun, Sheng-Ya Lu, Min-Yu Chiang, Hui-Chao Tsai, Mei-Ju Shih, David Ray Chang, Fuu-Jen Tsai, Hsiu-Yin Chiang, Chin-Chi Kuo

In the past two decades, healthcare organizations have transitioned from the early stages of digitization and digitalization to a more comprehensive process of digital transformation, a shift significantly accelerated by the advent of artificial intelligence (AI). Consequently, the development of high-quality clinical data warehouses, derived from electronic health records (EHRs) and enriched with multidomain data, such as genomics, proteomics, and Internet of Things (IoT) information, has become essential for the creation of the modern patient digital twin (PDT). This approach is critical for leveraging AI in the evolving landscape of clinical practice. Leading medical centers and healthcare institutions have adopted this model, as summarized in this review. Since 2020, China Medical University Hospital (CMUH) has been constructing its data ecosystem by integrating EHRs with extensive genomic databases. This initiative has led to the development of a data service platform, the ignite Hyper-intelligence (iHi®) platform. The iHi platform serves as a case study exemplifying the workflow of the smart data chip, which facilitates the deep cleaning and reliable de-identification of clinical data while incorporating analytical platforms related to genomics and the microbiome to enhance insight extraction processes. The ability to predict complex interactions and disease trajectories among PDTs, digital counterparts of healthcare professionals, and virtual socioeconomic environments will be pivotal in advancing personalized healthcare and optimizing patient outcomes. Future challenges will involve the unification of cross-institutional data platforms and ensuring the interoperability of AI inferences-key factors that will define the next era of AI-driven healthcare.

在过去二十年中,医疗机构已从数字化和数字化的早期阶段过渡到更全面的数字化转型过程,人工智能(AI)的出现大大加速了这一转变。因此,开发源于电子健康记录(EHR)并丰富了基因组学、蛋白质组学和物联网(IoT)信息等多域数据的高质量临床数据仓库,已成为创建现代患者数字孪生(PDT)的关键。这种方法对于在不断发展的临床实践中利用人工智能至关重要。领先的医疗中心和医疗机构已经采用了这种模式,本综述对此进行了总结。自 2020 年以来,中国医科大学附属医院(CMUH)一直在通过整合电子病历和广泛的基因组数据库来构建其数据生态系统。这一举措促成了数据服务平台--点燃超智能(iHi®)平台的开发。iHi 平台是智能数据芯片工作流程的一个案例研究,它有助于对临床数据进行深度清理和可靠的去标识化,同时结合与基因组学和微生物组相关的分析平台,加强洞察力提取过程。预测PDT、医疗保健专业人员的数字对应方以及虚拟社会经济环境之间复杂的相互作用和疾病轨迹的能力,对于推进个性化医疗保健和优化患者预后至关重要。未来的挑战将涉及跨机构数据平台的统一以及确保人工智能推断的互操作性--这些关键因素将决定下一个人工智能驱动的医疗保健时代。
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引用次数: 0
Artificial intelligence-driven prediction and validation of blood-brain barrier permeability and absorption, distribution, metabolism, excretion profiles in natural product research laboratory compounds. 人工智能驱动的血脑屏障渗透性和吸收、分布、代谢、排泄的预测和验证在天然产品研究实验室化合物。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-01 eCollection Date: 2024-01-01 DOI: 10.37796/2211-8039.1474
Jai-Sing Yang, Eddie Tc Huang, Ken Yk Liao, Da-Tian Bau, Shih-Chang Tsai, Chao-Jung Chen, Kuan-Wen Chen, Ting-Yuan Liu, Yu-Jen Chiu, Fuu-Jen Tsai

Introduction: Our previous research demonstrated that a large language model (LLM) based on the transformer architecture, specifically the MegaMolBART encoder with an XGBoost classifier, effectively predicts the blood-brain barrier (BBB) permeability of compounds. However, the permeability coefficients of compounds that can traverse this barrier remain unclear. Additionally, the absorption, distribution, metabolism, and excretion (ADME) characteristics of substances obtained from the Natural Product Research Laboratory (NPRL) at China Medical University Hospital (CMUH) have not yet been determined.

Objectives: The study aims to investigate the pharmacokinetic ADME properties and BBB permeability coefficients of NPRL compounds.

Materials and methods: A combined model using a transformer-based MegaMolBART encoder and XGBoost classifier was employed to predict BBB permeability. Machine learning (ML) tools from Discovery Studio were used to assess the ADME characteristics of the NPRL compounds. The CCK-8 assay was conducted to evaluate the cytotoxic effects of NPRL compounds on bEnd.3 brain endothelial cells after exposure to 10 μg/mL of the compounds. We assessed the permeability coefficient by subjecting bEnd.3 cell monolayers to the test compounds and measuring the permeability of FITC-dextran.

Results: There were 4956 compounds that could cross the blood-brain barrier (BBB+) and 2851 that could not (BBB-) in the B3DB dataset that was utilized for training. A total of 2461 BBB+ and 2184 BBB- compounds were used in the NPRL-CMUH dataset for testing. The permeability coefficient of temozolomide (TMZ) and 21 other BBB + compounds exceeded 10 × 10-7 cm/s. Computational analysis revealed that NPRL compounds exhibited a variety of ADME characteristics.

Conclusion: Computer-based predictions for the NPRL of CMUH compounds regarding their capacity to traverse the BBB are verified by the findings. Artificial intelligence (AI) prediction models have effectively identified the potential ADME characteristics of various compounds.

我们之前的研究表明,基于变压器架构的大型语言模型(LLM),特别是带有XGBoost分类器的MegaMolBART编码器,可以有效地预测化合物的血脑屏障(BBB)渗透率。然而,能够穿越这一屏障的化合物的渗透系数仍不清楚。此外,从中国医科大学医院(CMUH)天然产物研究实验室(NPRL)获得的物质的吸收、分布、代谢和排泄(ADME)特性尚未确定。目的:研究NPRL化合物ADME的药动学性质及血脑屏障通透系数。材料和方法:采用基于变压器的MegaMolBART编码器和XGBoost分类器的组合模型来预测血脑屏障的渗透率。使用Discovery Studio的机器学习(ML)工具来评估NPRL化合物的ADME特征。CCK-8法评价NPRL化合物对bEnd细胞的毒性作用。10 μg/mL化合物作用后3个脑内皮细胞。我们通过弯曲来评估渗透系数。3细胞单层对测试化合物和测量fitc -葡聚糖的通透性。结果:在用于训练的B3DB数据集中,有4956种化合物可以穿过血脑屏障(BBB+), 2851种化合物不能穿过血脑屏障(BBB-)。在NPRL-CMUH数据集中共使用了2461个BBB+和2184个BBB-化合物进行测试。替莫唑胺(TMZ)等21种BBB +化合物的渗透系数均超过10 × 10-7 cm/s。计算分析表明,NPRL化合物具有多种ADME特征。结论:基于计算机的CMUH化合物关于其穿越血脑屏障能力的NPRL预测得到了研究结果的验证。人工智能(AI)预测模型有效地识别了各种化合物的潜在ADME特征。
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引用次数: 0
Application of machine learning to identify risk factors for outpatient opioid prescriptions following spine surgery. 应用机器学习识别脊柱手术后门诊阿片类药物处方的危险因素。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-01 eCollection Date: 2024-01-01 DOI: 10.37796/2211-8039.1471
Alexander Bouterse, Andrew Cabrera, Adam Jameel, David Chung, Olumide Danisa

Introduction: Spine surgery is a common source of narcotic prescriptions and carries potential for long-term opioid dependence. As prescription opioids play a role in nearly 25 % of all opioid overdose deaths in the United States, mitigating risk for prolonged postoperative opioid utilization is crucial for spine surgeons.

Purpose: The aim of this study was to employ six ML algorithms to identify clinical variables predictive of increased opioid utilization across spinal surgeries, including anterior cervical discectomy and fusion (ACDF), posterior thoracolumbar fusion (PTLF), and lumbar laminectomy.

Methods: A query of the author's institutional database identified adult patients undergoing ACDF, PTLF, or lumbar laminectomy between 2013 and 2022. Six supervised ML algorithms, including Random Forest, Extreme Gradient Boosting, and LightGBM, were tasked with predicting additional opioid prescriptions at a patient's first postoperative visit based on set variables. Predictive variables were evaluated for missing data and optimized. Model performance was assessed with common analytical metrics, and variable importance was quantified using permutation feature importance. Statistical analysis utilized Pearson's Chi-square tests for categorical and independent sample t-tests for numerical differences.

Results: The author's query identified 3202 patients matching selection criteria, with 841, 1,409, and 952 receiving ACDF, PTLF, and lumbar laminectomy, respectively. The ML algorithms produced an aggregate AUC of 0.743, performing most effectively for lumbar laminectomy. Random Forest and LightGBM classifiers were selected for generation of permutation feature importance (PFI) values. Hospital length of stay was the only highly featured variable carrying statistical significance across all procedures.

Conclusion: Notable risk factors for increased postoperative opioid use were identified, including shorter hospital stays, younger age, and prolonged operative time. These findings can help identify patients at increased risk and guide strategies to mitigate opioid dependence.

脊柱外科是麻醉药处方的常见来源,并具有长期阿片类药物依赖的潜力。由于处方阿片类药物在美国近25%的阿片类药物过量死亡中起作用,因此降低术后阿片类药物长期使用的风险对脊柱外科医生至关重要。目的:本研究的目的是采用六种ML算法来识别预测脊柱手术中阿片类药物使用增加的临床变量,包括前路颈椎椎间盘切除术和融合(ACDF)、后路胸腰椎融合(PTLF)和腰椎椎板切除术。方法:查询笔者的机构数据库,确定2013年至2022年间接受ACDF、PTLF或腰椎椎板切除术的成年患者。包括随机森林、极端梯度增强和LightGBM在内的六种监督ML算法的任务是根据设置的变量预测患者术后首次就诊时额外的阿片类药物处方。对缺失数据进行预测变量评估并优化。模型性能用常用的分析指标进行评估,变量重要性用排列特征重要性进行量化。统计分析使用皮尔逊卡方检验分类和独立样本t检验数值差异。结果:作者的查询确定了3202例符合选择标准的患者,分别有841例、1409例和952例接受ACDF、PTLF和腰椎椎板切除术。ML算法产生的总AUC为0.743,在腰椎椎板切除术中表现最有效。选择Random Forest和LightGBM分类器生成排列特征重要性(PFI)值。住院时间是唯一具有高度特征的变量,在所有程序中具有统计学意义。结论:确定了术后阿片类药物使用增加的显著危险因素,包括较短的住院时间、较年轻的年龄和较长的手术时间。这些发现可以帮助识别风险增加的患者,并指导减轻阿片类药物依赖的策略。
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引用次数: 0
Juxtaposition of bone age and sexual maturity rating of the Taiwanese population. 台湾人口骨龄与性成熟等级之比较。
IF 2.1 Q2 MEDICINE, GENERAL & INTERNAL Pub Date : 2024-12-01 eCollection Date: 2024-01-01 DOI: 10.37796/2211-8039.1466
Wen-Li Lu, Chung-Hsing Wang, Yi-Chun Lin, Fuu-Jen Tsai

Background: Bone age (BA) and sexual maturity rating (SMR) are crucial measures in assessing adolescent growth and development. However, studies specifically focusing on the association between BA and SMR in the Taiwanese adolescent population are limited. This study aims to utilize AI-assessed BA results to establish a relationship between BA and SMR in the Taiwanese adolescent population, particularly regarding the initiation of puberty.

Materials and methods: The electronic medical records of bone age assessments conducted between January 1, 2019, and December 31, 2019, were reviewed retrospectively. For individuals with multiple records, only the latest entry within this period was retained. Records lacking a valid SMR or presenting significant medical conditions were excluded from the analysis. Males aged 7-17 years and females aged 6-16 years were included in the study.

Results: The onset of puberty was observed to occur at a median bone age of 11.50 years (95% CI: 11.42-11.83) for males and 9.33 years (95% CI: 9.25-9.50) for females.

Conclusion: The consistency between BA and SMR could serve as an alternative approach for assessing pubertal status in peripubertal children, providing a less intrusive evaluation regardless of chronological age (CA).

背景:骨龄(BA)和性成熟评分(SMR)是评价青少年生长发育的重要指标。然而,在台湾青少年群体中,专门关注BA与SMR之间关系的研究有限。本研究旨在利用ai评估的BA结果,在台湾青少年中建立BA与SMR之间的关系,特别是在青春期开始方面。材料与方法:回顾性分析2019年1月1日至2019年12月31日进行骨龄评估的电子病历。对于有多个记录的个人,只保留该期间内最新的记录。缺乏有效SMR或出现重大医疗状况的记录被排除在分析之外。研究对象为7-17岁的男性和6-16岁的女性。结果:青春期的开始被观察到发生在中位骨龄11.50岁(95% CI: 11.42-11.83)的男性和9.33岁(95% CI: 9.25-9.50)的女性。结论:BA和SMR的一致性可以作为评估青春期周围儿童青春期状态的一种替代方法,提供了一种较少侵入性的评估,而不考虑实足年龄(CA)。
{"title":"Juxtaposition of bone age and sexual maturity rating of the Taiwanese population.","authors":"Wen-Li Lu, Chung-Hsing Wang, Yi-Chun Lin, Fuu-Jen Tsai","doi":"10.37796/2211-8039.1466","DOIUrl":"https://doi.org/10.37796/2211-8039.1466","url":null,"abstract":"<p><strong>Background: </strong>Bone age (BA) and sexual maturity rating (SMR) are crucial measures in assessing adolescent growth and development. However, studies specifically focusing on the association between BA and SMR in the Taiwanese adolescent population are limited. This study aims to utilize AI-assessed BA results to establish a relationship between BA and SMR in the Taiwanese adolescent population, particularly regarding the initiation of puberty.</p><p><strong>Materials and methods: </strong>The electronic medical records of bone age assessments conducted between January 1, 2019, and December 31, 2019, were reviewed retrospectively. For individuals with multiple records, only the latest entry within this period was retained. Records lacking a valid SMR or presenting significant medical conditions were excluded from the analysis. Males aged 7-17 years and females aged 6-16 years were included in the study.</p><p><strong>Results: </strong>The onset of puberty was observed to occur at a median bone age of 11.50 years (95% CI: 11.42-11.83) for males and 9.33 years (95% CI: 9.25-9.50) for females.</p><p><strong>Conclusion: </strong>The consistency between BA and SMR could serve as an alternative approach for assessing pubertal status in peripubertal children, providing a less intrusive evaluation regardless of chronological age (CA).</p>","PeriodicalId":51650,"journal":{"name":"BioMedicine-Taiwan","volume":"14 4","pages":"78-81"},"PeriodicalIF":2.1,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703394/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142958565","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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BioMedicine-Taiwan
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