Intertidal subterranean estuaries (STEs), as a critical component of the Earth's Critical Zone, are biogeochemical hotspots for greenhouse gas (GHGs: N2O, CH4, and CO2) emissions. Tidal forcing fundamentally controls carbon and nitrogen cycles that driving the production/consumption of GHGs in muddy and sandy intertidal STEs. However, the sediment-dependent source/sink dynamics of GHGs and tidal responses remain poorly constrained. Through high-resolution spatiotemporal observations across sediment types in intertidal STEs, we show that the mudflat acted as a net GHGs source to coastal waters, whereas the sandy beach was a net sink of N2O but a source of CH4 and CO2. Both types were net atmospheric GHGs sources, with CO2 accounting for 79.05–99.88 %. The comparable magnitude of GHGs fluxes between sandy (N2O: 0.67±2.36 µmol m-2 h-1; CH4: 16.64±32.15 µmol m-2 h-1; CO2: 2722.19±1825.04 µmol m-2 h-1) and muddy (N2O: 2.12±1.96 µmol m-2 h-1; CH4: 69.19±163.41 µmol m-2 h-1; CO2: 4884.07±2680.89 µmol m-2 h-1) systems underscores the previously underestimated contribution of low-organic sandy coasts to marine GHGs budgets. Our analyses further identify pronounced tidal modulation of dissolved GHGs storage and transport pathways, including lateral (porewater exchange) and vertical (sediment/water-air interfaces) fluxes, with particularly strong tidal phase dependence in sandy environments. Global extrapolation of these observations estimates intertidal zones emissions at approximately 0.06±0.14 Tg N2O, 0.53±1.11 Tg CH4, and 191.22 ± 123.69 Tg CO2 annually. These findings enhance mechanistic understanding of tidal-scale GHGs variability in coastal aquifers, highlighting the necessity to integrate hydrology and biogeochemistry into global GHGs budget to refine climate predictions.
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