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The complete chloroplast genome of Diarthron linifolium (Thymelaeaceae), a species found on a limestone outcrop in eastern Asia 在东亚石灰岩露头上发现的一个物种——丽叶菊的完整叶绿体基因组
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-12-31 DOI: 10.11110/kjpt.2021.51.4.345
Sang-Tae Kim, Sang-Hun Oh, Jongsun Park
Diarthron linifolium Turcz. is an annual herb usually found in sandy soil or limestone areas. Plants in the genus Diarthron are known to have toxic chemicals that may, however, be potentially useful as an anticancer treatment. Diarthron linifolium is a unique species among the species of the genus distributed in Korea. Here, we determine the genetic variation of D. linifolium collected in Korea with a full chloroplast genome and investigate its evolutionary status by means of a phylogenetic analysis. The chloroplast genome of Korean D. linifolium has a total length of 172,644 bp with four subregions; 86,158 bp of large single copy and 2,858 bp of small single copy (SSC) regions are separated by 41,814 bp of inverted repeat (IR) regions. We found that the SSC region of D. linifolium is considerably short but that IRs are relatively long in comparison with other chloroplast genomes. Various simple sequence repeats were identified, and our nucleotide diversity analysis suggested potential marker regions near ndhF. The phylogenetic analysis indicated that D. linifolium from Korea is a sister to the group of Daphne species.
三叶草。是一种一年生草本植物,常见于沙质土壤或石灰岩地区。众所周知,Diarsron属植物含有有毒化学物质,但这些化学物质可能有潜在的抗癌作用。李氏小菊是分布于韩国的小菊属植物中的一个特有种。在这里,我们用完整的叶绿体基因组确定了在韩国采集的D.liniffolium的遗传变异,并通过系统发育分析研究了其进化状况。韩国三叶草叶绿体基因组全长172644bp,共有四个亚区;86158bp的大单拷贝和2858bp的小单拷贝(SSC)区被41814bp的反向重复(IR)区分开。我们发现,与其他叶绿体基因组相比,盾叶草的SSC区域相当短,但IRs相对较长。鉴定了各种简单的序列重复,我们的核苷酸多样性分析表明ndhF附近有潜在的标记区。系统发育分析表明,来自韩国的D.linifolium是Daphne类群的姊妹种。
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引用次数: 6
New records of flowering plants collected from the Phou Khao Khouay National Biodiversity Conservation Area for the flora of Laos 老挝Phou Khao Khouay国家生物多样性保护区开花植物新记录
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.305
C. Lim, Kyoung-Eun Lee, Hyun-Sung Cho, Veosavanh Saysavanh, Hyosig Won
We report 14 species of flowering plants as new additions to the flora of Laos. These are Illex viridis (Aquifoliaceae), Capparis erycibe (Capparaceae), Euphorbia bokorensis (Euphorbiaceae), Exacum darae (Gentianaceae), Aeschynanthus cambodiensis (Gesneriaceae), Tetraphyllum roseum (Gesneriaceae), Utricularia gibba (Lentibulariaceae), Macrosolen brandisianus (Loranthaceae), Decaschistia siamensis (Malvaceae), Nyssa yunnanensis (Nyssaceae), Adenia penangiana var. penangiana (Passifloraceae), Pentaphylax euryoides (Pentaphylacaceae), Wikstroemia bokorensis (Thymelaeaceae), and Debregeasia wallichiana (Urticaceae). We discovered the species during a botanical survey of the Phou Khao Khouay National Biodiversity Conservation Area (PKKNBCA) of Lao PDR in 2015-2019. In addition, nine rarely collected flowering plant species in Laos are newly reported for the PKKNBCA.
我们报告了14种开花植物作为老挝植物区系的新成员。它们分别是绿色Illex viridis(Aquifoliceae)、丹皮Capparis erycibe(Capparaceae,槟榔Adenia penangiana var.penangianna(西番莲科)、宽叶五门(五门科)、博科威氏菌Wikstroemia bokorensis(百里香科)和沃利奇亚黛布拉(荨麻科)。我们在2015-2019年对老挝Phou Khao Khouay国家生物多样性保护区(PKKNBCA)进行的植物调查中发现了该物种。此外,PKKNBCA新报道了老挝9种罕见的开花植物。
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引用次数: 2
Chromosome numbers of eight Carex taxa in Korea (Cyperaceae) 韩国八个苔草分类群的染色体数目(莎草科)
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.192
Kyong-Sook Chung, G. Chung
In the flora of Korea, Carex L. is one of the most species-rich genera. Among nearly 157 Carex taxa, less than 30 have had their chromosome numbers reported. We report the meiotic chromosome numbers of eight Carex taxa from Korean populations, which include the first count for C. accrescens Ohwi (n = 37II) and the first chromosome investigations of Korean populations for three taxa: C. bostrychostigma Maxim. (n = 22II), C. lanceolata Boott (n = 36II), and C. paxii Kük. (n = 38II). In most species, chromosome counts observed in the study are included within the variation ranges of previous chromosome numbers. However, C. bostrychostigma Maxim. (n = 22II) and C. planiculmis Kom. (n = 29II) are assigned new chromosome numbers. Carex is known to have holocentric chromosomes, lacking visible primary constrictions and exhibiting great variance in its chromosome number. Further investigations of the diversity of Carex chromosomes will provide basic information with which to understand the high species diversity of the genus.
在韩国植物区系中,Carex L.是种类最丰富的属之一。在157个苔属植物分类群中,仅有不到30个的染色体数目被报道。本文报道了韩国人群中8个苔属植物类群的减数分裂染色体数目,其中包括首次计数的C. accrescens Ohwi (n = 37II)和3个分类群的首次染色体调查:C. bostrychostigma Maxim。(n = 22II)、杉木(n = 36II)和杉木(n = 36II)。(n = 38II)。在大多数物种中,研究中观察到的染色体计数都包含在先前染色体数目的变异范围内。然而,C. bostrychostigma Maxim。(n = 22II)和C. planiculmis Kom。(n = 29II)被分配了新的染色体编号。已知苔草具有全新中心的染色体,缺乏可见的初级缩窄,并且在染色体数量上表现出很大的差异。对苔属植物染色体多样性的进一步研究将为了解苔属植物的高度物种多样性提供基础信息。
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引用次数: 2
Re-examination of the vascular plants on Hongdo Island, Korea 韩国红岛维管植物的再考察
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.205
Young-Jong Jang, Jongsun Park, J. Lee, Ji-yeon Lee, Byoung-Hee Choi
This study was carried out to survey the flora of Hongdo Island in Sinan-gun, Jeollanam-do, South Korea. Specimens collected from previous Hongdo flora studies were reexamined using a relevant biodiversity database, and field surveys were carried out 22 times from April of 2003 to October of 2020. Based on the specimens collected during both previous studies and this study, the identified vascular plants of Hongdo consisted of 472 taxa comprising 102 families, 296 genera, 425 species, 6 subspecies, and 41 varieties. Among them, 111 taxa are newly recorded in this study, and 6 taxa are described in detail in terms of their morphological characteristics and habitat. Also, 29 taxa were reviewed or re-identified with corresponding taxonomic annotations. In Korea, Hongdo represents the northern distributional limit of the 4 taxa of Goodyera biflora, Damnacanthus major, Calanthe aristulifera, and Hemerocallis hongdoensis. Moreover, Hosta yingeri and Saussurea polylepis are endemic to Hongdo and nearby islands in Korea. Distribution maps of these species were prepared. Protected species designated by the Ministry of Environment were 7 taxa consisting of 2 taxa of level I, specifically Sedirea japonica and Neofinetia falcata, and 5 taxa of level II, which were Cymbidium macrorhizon, Woodwardia japonica, Dendrobium moniliforme, Calanthe aristulifera, and Bulbophyllum inconspicuum. Red list plants as designated by the National Institute of Biological Resources numbered 11 taxa. Naturalized plants numbered 40 taxa.
对韩国全罗南道新安郡红岛的植物区系进行了调查。从2003年4月至2020年10月,利用相关生物多样性数据库对以往收集的红岛植物区系标本进行了重新检查,并进行了22次野外调查。根据前人和本研究收集的标本,红岛维管植物共包括102科296属425种6亚种41变种472个分类群。其中,新记录111个分类群,对6个分类群的形态特征和生境进行了详细描述。对29个分类群进行了鉴定或重新鉴定,并进行了相应的分类注释。在韩国,红岛代表了Goodyera biflora、Damnacanthus major、Calanthe aristulifera和Hemerocallis hongdoensis 4个分类群的北部分布界限。此外,韩国红岛及附近岛屿特有的有金丝莲(Hosta yingeri)和雪莲(sausurea polylepis)。绘制了这些物种的分布图。环境保护部确定的保护物种有7个分类群,其中一级分类群2个,主要是Sedirea japonica和nefinetia falcata;二级分类群5个,主要是Cymbidium macrorhizon、Woodwardia japonica、Dendrobium moniliforme、Calanthe aristulifera和Bulbophyllum in。国家生物资源研究所指定的红色名录植物共有11个分类群。归化植物40个分类群。
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引用次数: 2
The complete chloroplast genome of Limonium tetragonum (Plumbaginaceae) isolated in Korea 韩国分离的白桦属植物(Limonium tetragonum)叶绿体全基因组
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.337
Yongsung Kim, Hong Xi, Jongsun Park
The chloroplast genome of Limonium tetragonum (Thunb.) Bullock, a halophytic species, was sequenced to understand genetic differences based on its geographical distribution. The cp genome of L. tetragonum was 154,689 bp long (GC ratio is 37.0%) and has four subregions: 84,572 bp of large single-copy (35.3%) and 12,813 bp of small singlecopy (31.5%) regions were separated by 28,562 bp of inverted repeat (40.9%) regions. It contained 128 genes (83 proteincoding genes, eight rRNAs, and 37 tRNAs). Thirty-five single-nucleotide polymorphisms and 33 INDEL regions (88 bp in length) were identified. Maximum-likelihood and Bayesian inference phylogenetic trees showed that L. tetragonum formed a sister group with L. aureum, which is incongruent with certain previous studies, including a phylogenetic analysis.
对盐生植物四角藻(Limonium tetragonum(Thunb.)Bullock)的叶绿体基因组进行了测序,以了解其地理分布的遗传差异。L.tetragonum的cp基因组长154689bp(GC比率为37.0%),有四个亚区:84572bp的大单拷贝(35.3%)和12813bp的小单拷贝(31.5%)区域被28562bp的反向重复(40.9%)区域分开。它包含128个基因(83个蛋白质编码基因、8个rRNA和37个tRNA)。鉴定出35个单核苷酸多态性和33个INDEL区(长度为88bp)。最大似然和贝叶斯推断系统发育树表明,四角乳杆菌与金色乳杆菌形成姐妹群,这与之前的某些研究(包括系统发育分析)不一致。
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引用次数: 3
Mapping and analyzing the distribution of the species in the genus Tulipa (Liliaceae) in the Ferghana Valley of Central Asia 标题中亚费尔干纳山谷郁金香属植物分布的制图与分析
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.181
Davron Dekhkonov, K. Tojibaev, Dilmurod Makhmudjanov, Nu-ree Na, S. Baasanmunkh, Z. Yusupov, H. Choi, C. Jang
Tulips are bulbous geophytes that have considerable commercial value worldwide. This genus primarily originated in the Tien Shan and Pamir-Alai mountain ranges, which surround the Ferghana Valley. The Ferghana Valley is home to five sections of the genus Tulipa L, represented by 23 taxa (22 species). However, there is a lack of detailed information about the distribution of Tulipa species in the natural geographic area of the Ferghana Valley. Therefore, to address this knowledge gap, we comprehensively investigated the spatial distribution of all Tulipa species in the valley. To assess the spatial distribution, the entire area was divided into 32 squares consisting of four latitudinal and eight longitudinal zones. The results showed that latitudinal zones B and C with 15 and 13 taxa, respectively, along with five longitudinal zones (A5, B3, B4, C2, and C3) with 5 to 10 taxa were hotspots for this genus. Additionally, the spatial distributions of the species in terms of the corresponding state borders, mountain ranges, endemism, and conservation issues were assessed. The findings of this study provide comprehensive information about the distribution of Tulipa species to assist with conservation initiatives ultimately to ensure the survival of various species.
郁金香是一种球茎植物,在世界范围内具有相当大的商业价值。该属主要起源于费尔干纳山谷周围的天山和帕米尔-阿莱山脉。Ferghana山谷是Tulipa L属五个部分的家园,共有23个分类群(22种)。然而,缺乏关于Tulipa物种在Ferghana山谷自然地理区域分布的详细信息。因此,为了解决这一知识差距,我们全面调查了山谷中所有Tulipa物种的空间分布。为了评估空间分布,将整个区域划分为32个正方形,由四个纬度区和八个经度区组成。结果表明,纬度带B和C分别有15个和13个分类群,以及5个纵向带(A5、B3、B4、C2和C3)有5到10个分类群是该属的热点。此外,还评估了该物种在相应州边界、山脉、特有种和保护问题方面的空间分布。这项研究的结果提供了关于图里帕物种分布的全面信息,有助于保护举措,最终确保各种物种的生存。
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引用次数: 4
The complete chloroplast genome sequence of Korean Neolitsea sericea (Lauraceae) 韩国蚕桑(樟科)叶绿体全基因组序列
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.332
Yoon-Jung Park, Kyeong-Sik Cheon
The complete chloroplast (cp) genome sequence of Neolitsea sericea was determined by Illumina sequencing. The complete cp genome was 152,446bp in length, containing a large single-copy region of 93,796 bp and a small single-copy region of 18,506bp, which were separated by a pair of 20,072bp inverted repeats. A total of 112 unique genes were annotated, including 78 protein-coding genes (PCGs), 30 transfer RNAs, and four ribosomal RNAs. Among the PCGs, 18 genes contained one or two introns. A very low level of sequence variation between two cp genomes of N. sericea was found with seven insertions or deletions and only one single nucleotide polymorphism. An analysis using the maximum likelihood method showed that N. sericea was closely related to Actinodaphne trichocarpa.
采用Illumina测序法测定了蚕桑新石藻叶绿体(cp)全基因组序列。完整的cp基因组长度为152446bp,包含一个93796bp的大单拷贝区和一个18506bp的小单拷贝区,由一对20072bp的反向重复序列分离。共注释了112个独特基因,包括78个蛋白质编码基因(PCG)、30个转移RNA和4个核糖体RNA。在PCG中,有18个基因含有一个或两个内含子。两个蚕桑cp基因组之间的序列变异水平很低,有7个插入或缺失,只有一个单核苷酸多态性。最大似然法分析表明,蚕桑与毛果放线菌亲缘关系密切。
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引用次数: 1
Two unrecorded Elymus taxa (Poaceae) newly added to Korean flora: E. humidus and E. shandongensis 韩国植物群中新增加的两个未记录的披碱草分类群:胡氏披碱草和山东披碱草
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.294
S. Choi, Jonghwan Kim, Y. Park, C. Kim
Given that the Korean genus Elymus L. (Poaceae) is often confused with Agropyron Gaertn., the categories and characteristics of Elymus s.l. have been reviewed morphologically. Two unrecorded taxa of Elymus, E. humidus (Ohwi & Sakam.) T. Osada and E. shandongensis B. Salomon, not previously recorded in Korean flora to date, we report here as an unrecorded species based on samples collected from Chungcheongbuk-do, Gyeongsangnam-do, Jeollanam-do, and Jeollabuk-do. E. humidus is distinguished from other taxa in terms of its habitat around riversides, erect inflorescences, spikelets appressed to rachides of inflorescence, and new individuals asexually propagated at the lower nodes of aerial stems. E. shandongensis is similar to E. tsukushiensis var. transiens (Hack.) H. Osada but is distinguished by the flowering time, slightly curved inflorescences, number of veins of the glumes, and spikelets appressed to the rachides. Descriptions of the two unrecorded Korean taxa, photographs, and keys to neighboring taxa are presented.
鉴于韩国的披碱草属(Poaceae)经常与冰草属(Agropyron Gaertn)混淆。,从形态学角度对披碱草的种类和特征进行了综述。Elymus的两个未记录分类群,E.humidus(Ohwi&Sakam.)T.Osada和E.shandongensis B.Salomon,迄今为止尚未在韩国植物区系中记录,我们在这里根据从忠清北道、庆尚南道、全罗南道和全罗北道收集的样本作为未记录物种进行报告。E.humidus与其他分类群的区别在于其在河边的栖息地、直立的花序、贴伏在花序轴上的小穗,以及在地上茎的下节无性繁殖的新个体。E.shandongensis与E.tsukushiensis var.transiens(Hack.)H.Osada相似,但其区别在于开花时间、略微弯曲的花序、颖片的脉数和贴伏在轴上的小穗。介绍了两个未记录的韩国分类群的描述、照片和相邻分类群的钥匙。
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引用次数: 0
Tripterygium wilfordii (Celastraceae): A new generic and species record for the flora of Vietnam 雷公藤(卫矛科):越南植物区系新属新种记录
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.319
D. Hai, B. Quang, T. Bach, Tran Duc Binh, R. Choudhary, Joongku Lee
Tripterygium wilfordii Hook.f. (Celastraceae), collected from Phia Oac-Phia Den National Park of Vietnam, is reported here as a new generic and species record for the flora of Vietnam. The genus Tripterygium differs from other genera of Celastraceae by its samara fruits, which become three-winged at maturity, and a scandent shrub. Taxonomic notes, descriptions, line drawing and photographs are provided, together with short notes on the distribution, ecology and phenology of Tripterygium wilfordii.
本文报道了从越南Phia Oac Phia Den国家公园采集的雷公藤(卫矛科)为越南植物区系的新属和新种记录。雷公藤属与卫矛科其他属的不同之处在于其翅果和攀缘灌木,翅果成熟时变成三翅。提供了雷公藤的分类注释、描述、线描和照片,并简要介绍了雷公藤的分布、生态学和酚学。
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引用次数: 0
The complete chloroplast genome of Zoysia macrostachya (Poaceae): Insights into intraspecific variations and species delimitation of the Zoysia species 大结缕草(禾科)叶绿体全基因组:结缕草种内变异和种划分的认识
IF 1 Q4 PLANT SCIENCES Pub Date : 2021-09-30 DOI: 10.11110/kjpt.2021.51.3.326
Sung‐Dug Oh, Seong-Kon Lee, D. Yun, Hyeon-jin Sun, Hong-Gyu Kang, H. Lee, Hong Xi, Jongsun Park, Bumkyu Lee
The complete chloroplast genome of Zoysia macrostachya Franch. & Sav. isolated in Korea is 135,902 bp long (GC ratio is 38.4%) and has four subregions; 81,546 bp of large single-copy (36.3%) and 12,586 bp of small single-copy (32.7%) regions are separated by 20,885 bp of inverted repeat (44.1%) regions, including 130 genes (83 protein-coding genes, eight rRNAs, and 39 tRNAs). Thirty-nine single nucleotide polymorphisms and 11 insertions and deletion (INDEL) regions were identified from two Z. macrostachya chloroplast genomes, the smallest among other Zoysia species. Phylogenetic trees show that two Z. macrostachya chloroplast genomes are clustered into a single clade. However, we found some incongruency with regard to the phylogenetic position of the Z. macrostachya clade. Our chloroplast genome provides insights into intraspecific variations and species delimitation issues pertaining to the Zoysia species.
大结缕草叶绿体全基因组。和干腊肠。国内分离的长135902 bp (GC比38.4%),有4个子区;81,546 bp的大单拷贝区(36.3%)和12,586 bp的小单拷贝区(32.7%)被20,885 bp的反向重复区(44.1%)隔开,包括130个基因(83个蛋白质编码基因,8个rnas和39个tRNAs)。从两个结缕草叶绿体基因组中鉴定出39个单核苷酸多态性和11个插入和缺失(INDEL)区,是结缕草中最小的。系统发育树显示,两个大竹叶叶绿体基因组聚集在一个分支中。然而,我们发现在系统发育位置上存在一些不一致的地方。我们的叶绿体基因组提供了有关结缕草物种的种内变异和物种划分问题的见解。
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引用次数: 5
期刊
KOREAN JOURNAL OF PLANT TAXONOMY
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