Fungal Biology and Biotechnology最新文献

During the past decades, the importance of fungal biotechnology in advancing a bioeconomy and a circular economy has been emphasized in both scientific literature, project proposals, awarded grants and social media. Filamentous fungi have been proven to provide sustainable solutions for various industrial applications, ranging from bioremediation and medicine to the production of food, feed, materials, chemicals and energy. This is where we are today, but where could tomorrow's fungal biotechnology take us? How can the seemingly infinite potential of fungal biotechnology for a circular economy become unlocked? In this editorial, we will cover some of the critical aspects that we believe are essential for the success and impact of fungal biotechnology to a future bioeconomy.

Fusarium head blight, caused by Fusarium graminearum, is one of the most threatening fungal diseases of cereals worldwide. Current practices for control of F. graminearum are not always efficient, as epidemics still occur and there is low resistance in wheat varieties. Therefore, novel antifungal targets must be discovered by analyzing the molecular interaction between F. graminearum and its host. Fungal extracellular vesicles (EVs) are small membrane-bound compartments (30-1000 nm) that carry macromolecules and support fungal virulence, hence the disruption of EV production could lead to reduced fungal pathogenicity. However, EV study is limited by the lack of surface protein markers to aid in their characterization. Therefore, the aim of this report was to target a surface protein marker with an antibody, to unlock advanced EV characterization techniques. Using the list of potential EV markers for Candida albicans, we selected the tetraspanin-like Sur7 to perform immunogold microscopy, revealing that this protein is a surface marker of F. graminearum EVs. SUR7 is present on the surface of some but not all vesicles. EVs carrying SUR7 were larger than those without the marker, suggesting that there are subtypes of fungal EVs. The epitope recognized by the anti-Sur7 antibody is conserved in other Fusarium pathogens, making Sur7 a potential pan-Fusarium EV marker. Our results unlock techniques, such as immunoaffinity chromatography and antibody labeling, to track fungal EVs and understand their biogenesis, which may lead to the development of novel antifungals.

Fungal-based biomaterials are emerging as sustainable alternatives to synthetic polymers, offering biodegradability and low environmental impact. However, the interaction between mycelium and 3D-printed biopolymers, particularly regarding mechanical performance, remains underexplored. This research investigates the tensile behavior of biopolymer specimens produced by Material Extrusion Additive Manufacturing (MEX AM), focusing on the effects of Fomes fomentarius mycelium colonization. The study examines how pre- and post-processing steps, as well as different 3D-printing infill patterns, influence mycelial growth and its mechanical impact. Both pure PLA and PLA_Hemp biopolymers were studied to assess the role of natural particles in fungal interaction and structural performance. The results indicate that mycelial colonization has a minor impact on the mechanical properties of PLA, while PLA_Hemp shows more pronounced, time-dependent effects. Environmental conditions such as humidity and incubation also affect mechanical performance, whereas certain pretreatments, like autoclaving, can significantly weaken the material. Overall, this work provides insight into the integration of mycelium within 3D-printing biopolymers, demonstrating the feasibility of hybrid biocomposites and highlighting both opportunities and challenges, thereby paving the way for more sustainable materials design and construction practices.

The genus Trichoderma (Hypocreaceae, Ascomycota) compromises over 400 known species, that are found in various soils, on plant surfaces and as plant endophytes. Interactions between the mycoparasitic Trichoderma spp. and beneficial ectomycorrhizal fungi such as Laccaria bicolor (Hydnangiaceae, Basidiomycota) can influence the structure of fungal communities and plant symbioses. In this study, we conducted in vitro dual-culture experiments involving L. bicolor and four Trichoderma strains (T. harzianum WM24a1, MS8a1, ES8g1, and T. atrobrunneum) to analyze their metabolic responses in relation to varying degrees of physical contact. Using integrated analyses of volatile organic compounds (VOCs), hyphal metabolomes, and secreted exudates, we uncovered strong contact- and strain-dependent growth inhibition patterns: Trichoderma growth was suppressed under shared headspace, whereas L. bicolor was more strongly inhibited under direct contact. Metabolomic profiling revealed distinct and strain-specific alterations in both VOC and soluble metabolite profiles during co-cultivation, with hundreds of discriminant mass features affected. Key metabolic pathways, including amino acid, carbohydrate, lipid, and secondary metabolite biosynthesis, showed differential enrichment depending on the interaction stage and fungal partner. These results demonstrate that Trichoderma-Laccaria interactions are mediated by dynamic, contact-specific chemical reprogramming and suggest that fungal recognition and competition involve coordinated changes in both volatile and non-volatile metabolite production. Our findings provide a foundation for exploring how such antagonistic interactions may influence tripartite communication in plant-associated microbial networks. They also highlight the potential role of both emitted and secreted fungal metabolites in shaping interaction dynamics through putative non-self-recognition mechanisms.

Background: Fungal volatile organic compounds (fVOCs) serve as crucial mediators in ecological interactions and hold significant potential for applications in agriculture and biotechnology. Fungi establish inter-organism communication through volatile molecules, enabling them to regulate plant growth and interact with diverse soil-dwelling organisms. This study integrates a comprehensive literature survey and bibliometric analysis to capture the complexity and interdisciplinary nature of fVOC research, drawing on PubMed, Google Scholar, and Scopus databases spanning 2000 to 2023.

Results: The findings highlight the role of fVOCs as essential chemical messengers in inter-organismic communication, their contribution to sustainable agricultural practices as plant growth promoters, and their significance in human sensory perception, particularly in culinary contexts. Our bibliometric analysis of 3,738 publications maps fVOC research trends worldwide using co-occurrence and -citation analyses. The latter uncovered an early research focus on yeast fermentation and antimicrobial activity, which has since expanded to sustainable agriculture, biofumigation, endophytic fungi, and the development of advanced analytical techniques. Emerging research clusters focus on plant-fungus communication, the biotechnological production of aroma compounds, and the influence of fVOCs on human sensory experiences.

Conclusions: The fVOC research field has matured during the last two decades. Promising avenues for future exploration include the improvement of crop resilience, the advancements of eco-friendly technologies, such as biological pest management or VOC-driven fertilisation, and a better understanding of the intricate volatile communication that drives fungal interactions with other kingdoms of life.

Paecilomyces marquandii IBWF 003-21 produces vibrant purple pigmented conidia, the color of which can be attributed to the naphthacenedione natural product saintopin (1). The target compound was previously reported to exhibit potent topoisomerase-inhibitory activity, yet has not been extensively studied nor has the biosynthesis been elucidated. In an effort to elucidate the biosynthesis of 1, we mined the genome of Paecilomyces marquandii for non-reducing polyketide synthases (nrPKS), introduced them into the heterologous host Aspergillus oryzae OP12 and identified a prime candidate for the biosynthesis of 1 we termed stpA. Deletion of stpA in the native producer P. marquandii abolished production of 1, rendering conidia hyaline in color. stpA phylogenetically clusters with clade V nrPKS, canonically requiring trans-acting metallo-β-lactamase-like thioesterases (MβL) for product offloading, however, no MβL is encoded in the vicinity of stpA. Instead, a BLAST-search revealed a single MβL, stpB, encoded elsewhere in the P. marquandii genome, accompanied by a flavin-dependent monooxygenase (FMO), stpC, and an O-methyltransferase, stpD. Heterologous coexpression of stpA and stpC sufficed for reconstituting 1 biosynthesis in A. oryzae OP12 even without additional coexpression of stpB. Coexpression of stpC alongside the decaketide-synthase adaA involved in TAN-1612 biosynthesis also resulted in the production of 1, which implies that the formation of 1 proceeds via a decaketide precursor that is subsequently shortened. While the structure and biosynthesis of 1 are unique compared to other fungal naphthacenediones, further research is necessary to elucidate the elusive mechanism underlying the formation of 1.

Stillage is a byproduct of distilleries which is rich in organic matter, minerals, and acidic components. It is commonly used as animal feed and has high potential for use as an alternative substrate for microorganisms. Filamentous fungi are saprophytes that can utilize stillage solids to grow as threadlike mycelium. The structure and composition of the filamentous mycelium has shown promise to produce pure mycelium materials (PMM), which might have potential to serve as leather-like or other novel materials with improved environmental impact profiles. Basidiomycota fungi (including true mushrooms) species are presently used in industry to produce PMM due to the ease of suppressing sporulation and encouraging vegetative growth. Other fungal phyla such as Mucoromycota offer benefits of faster growth, but suppression of sporulation is often more difficult. The production of PMM is a relatively new area and sufficient quantitative data is lacking on the effective cultivation and processing steps required to optimize the materials for different potential applications. In this study, a cultivation system capable of producing PMM with solid-state fermentation (SSF) of stillage substrate by Mucoromycota fungus Rhizopus microsporus var. oligosporus was designed and tested. The influence of important operational parameters on the aerial mycelium growth characteristics was studied including (1) substrate packing density, (2) external support geometry, (3) substrate carbon-to-nitrogen (C: N) ratio, and (4) aerial delivery of additives. The results showed that stillage was a favorable substrate to produce PMM and that the studied operational parameters allowed for effective control of the mycelium fiber length, density, and moisture content. R. oligosporus displayed rapid growth, enhanced 3 to 4 times compared to Basidiomycota fungus Pleurotus ostreatus (oyster mushroom). Increasing substrate packing density and the length of external supports was found to encourage development of longer aerial mycelium fibers while aerial delivery of additives was found to have limited effects on fiber length but significantly influenced mycelium density and moisture content. It was also found that the use of unprocessed stillage solids was effective at delaying the sporulation of this Mucoromycota fungus and promoting development of aerial mycelium, which was hypothesized to be related to its natively low C: N ratio. Together, these results indicate promise for the efficient production of tunable PMM from inexpensive organic substrates.

New fungal biotechnologies are advancing applied and conservation mycology to support global regenerative outcomes for natural and human systems. Here, we propose the Applied and Conservation Mycology Framework to align fungal biotechnology and Indigenous Knowledge Systems in support of planetary health, "the health of human civilization and the state of the natural systems it depends on." The Kunming-Montreal Global Biodiversity Framework (KM-GBF) adopted at the 2022 United Nations Biodiversity Conference is humanity's best effort at reconciling the sustainable development of all societies and biodiversity loss while reaffirming the rights of Indigenous Peoples (IPs). Through Indigenous Data Sovereignty (IDSov) and Governance (IDGov), fungal biotechnologies could help address all 23 KM-GBF Targets. In this opinion paper, we apply Indigenous relational science and knowledge systems to explore how advancements in fungal biotechnology and digital technology enable Indigenous Peoples to develop, practice, and govern fungal biotechnologies for applied and conservation mycology. We focus on the Kara & Kichwa Nations, Indigenous Peoples of Ecuador, the Cultural Mountain of Andea, and the Cultural Rainforest of Amazonia. The ACMF centers on fungal biotechnological innovation by Indigenous Peoples and their participation in the global bioeconomy in the service of planetary health and all 23 KM-GBF Targets. We offer a starting point for envisioning future fungal technologies developed by Indigenous Peoples and in service of planetary health.

Background: On a future lunar habitat, acquiring needed resources in situ will inevitably come from the Lunar regolith. Biomining, i.e. the use of microorganisms to extract metals from the regolith, is sustainable and energy-efficient, making it highly promising for space exploration applications. Given the extensive use of filamentous fungi in industrial biotechnology, we investigated the ability of the fungus Penicillium simplicissimum to extract metals from the European Astronaut Centre lunar regolith simulant 1 (EAC-1 A), which will be used as the analogue soil at the European Lunar Exploration Laboratory (LUNA) facility at the European Space Agency (ESA) and German Aerospace Centre (DLR) site.

Results: Biocompatibility tests demonstrated P. simplicissimum tolerance to high concentrations of EAC-1 A lunar regolith simulant (up to 60%), both on Earth gravity and Lunar simulated gravity via clinorotation. We reveal that a fungal bioleaching setup using low nutrient medium (20% PDB) enables P. simplicissimum to extract metals from EAC-1 A regolith over the course of 2 weeks at room temperature. Inductively coupled plasma mass spectrometry (ICP-MS) analysis of the leachate revealed the extraction of magnesium (up to 159 mg/L), calcium (151 mg/L), iron (68 mg/L), aluminium (32 mg/L), manganese (3 mg/L) as well as traces of titanium (0.02 mg/L). The recovered metal oxide powder from the leachate, obtained via centrifugation (14,500 g, 4,000 rpm), followed by filtration (0.22 μm) and drying at 60 °C overnight, achieved a promising average of 10 ± 3 g/L. Further analysis via SEM/EDS and XRD confirmed the presence of aluminium [as boehmite (AlO(OH))], magnesium, and iron [possibly as haematite (Fe₂O₃)] and magnetite [possibly as (Fe₃O₄)].

Conclusion: Our study demonstrates successful fungal biomining of lunar regolith simulant EAC-1 A and emphasizes the utilization of fungal-based approaches as promising ISRU technologies in future space exploration missions.

Wastewater treatment plants (WWTPs), particularly activated sludge systems, generate significant amounts of various types of waste, including screenings, primary sludge, and secondary sludge. While substantial research has been conducted on the recovery and valorization of sewage sludge, the treatment and utilization of screenings remain underexplored. In response, this study investigates the potential of white rot fungi to degrade cellulose-containing waste screened during the preliminary treatment and examines the production patterns of lignocellulolytic enzymes in the presence of this waste. The studied fungi exhibited variable enzymatic responses depending on the type of substrate, however, their adaptability highlighted the potential in fungal-mediated bioconversion processes. P. dryinus and T. versicolor were identified as strong and adaptive candidates for oxidative enzyme production, with P. dryinus showing laccase activity up to 1691.75 ± 12.22 U/mg and degrading 44.46% of carbohydrates in tested screenings. I. lacteus and B. adusta were predominantly observed in cellulolytic enzyme production, with B. adusta ensuring a 43.49% reduction in carbohydrate content of screenings. As a result of fungal cultivation in WWTP waste, the production potential of 34 to 46 kg of sugars per ton of screenings was determined. Therefore, the study presents a promising approach for the sustainable treatment of screenings and the development of waste management and resource recovery strategies for WWTP-derived waste.