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POLARIS is a copper-binding peptide that interacts with ETR1 to negatively regulate ethylene signaling in Arabidopsis. POLARIS是一种铜结合肽,与ETR1相互作用,负向调节拟南芥中的乙烯信号。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-06-25 DOI: 10.1016/j.xplc.2025.101432
Anna J Mudge, Saher Mehdi, Will Michaels, Beatriz Orosa-Puente, Weiran Shen, Charlie Tomlinson, Wenbin Wei, Claudia Hoppen, Buket Uzun, Dipan Roy, Flora M Hetherington, Jennifer F Topping, Ari Sadanandom, Georg Groth, Nigel J Robinson, Keith Lindsey

Ethylene signaling is one of the classic hormonal pathways in plants, with diverse roles in development and stress responses. The dimeric ethylene receptor localizes to the endoplasmic reticulum and contains Cu(I) ions essential for ethylene binding and signal transduction. We previously discovered that mutants of the Arabidopsis gene POLARIS (PLS), encoding a 36-amino-acid peptide, exhibit enhanced ethylene signaling responses suggestive of reduced receptor activity, but the role and activity of the PLS peptide in this signaling cascade have not been defined. Here, we report that Arabidopsis PLS binds copper as a 1:2 thiol-dependent Cu(I):PLS2 complex with an affinity of 3.79 (±1.5) × 1019 M-2 via two cysteine residues conserved in the related species Camelina sativa. These residues are also essential for biological function. This affinity precludes a role for PLS as a cytosolic Cu chaperone. We demonstrate that PLS localizes to endomembranes and interacts with the transmembrane domain of the receptor protein ETR1. PLS-ETR1 binding is increased in the presence of copper, and this interaction provides a Cu-dependent mechanism for mediating the repression of ethylene responses. Because PLS transcription is upregulated by auxin and downregulated by ethylene, PLS-ETR1 interactions also provide a mechanism for modulation of ethylene responses in high-auxin tissues.

乙烯信号是植物体内典型的激素通路之一,在植物发育和应激反应中发挥着多种作用。二聚体乙烯受体定位于内质网(ER),含有乙烯结合和信号转导所必需的Cu(I)离子。我们之前发现,拟南芥基因POLARIS (PLS)的突变体编码一个36个氨基酸的肽,表现出增强的乙烯信号反应,表明受体活性降低,但该肽在这一信号级联中的作用和活性尚未确定。在这里,我们报道了PLS与铜结合为1:2硫醇依赖的Cu(I):PLS2复合物,其亲和力为3.79(±1.5)x1019 M-2,通过在相关物种Camelina sativa中也发现的两个半胱氨酸残基。这些残基对于生物功能也是必不可少的。这种亲和力排除了PLS作为细胞质Cu伴侣。我们证明了PLS定位于膜内,并与受体蛋白ETR1的跨膜结构域相互作用。在铜的存在下,PLS-ETR1结合增加,这种相互作用提供了一种cu依赖的机制来介导乙烯反应的抑制。生长素上调了PLS转录,乙烯下调了PLS转录,因此PLS- etr1相互作用也为生长素含量高的组织中调节乙烯应答提供了机制。
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引用次数: 0
The 'non-conventional' peptidome: A new layer in plant regulatory mechanisms. “非常规”肽穹:植物调控机制的新层面。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-07-08 DOI: 10.1016/j.xplc.2025.101437
Raquel Álvarez-Urdiola, José Luis Riechmann

A substantial but largely unexplored fraction of eukaryotic proteomes is composed of peptides and small proteins (the peptidome). In recent years, short open reading frames (sORFs) capable of encoding functional peptides have been identified within transcripts annotated as non-coding RNAs or in intergenic regions. These sORF-encoded peptides (SEPs) were previously overlooked due to their small size and difficulties in detection, both experimentally and computationally. However, analyses of translating RNAs (ribosome profiling) and proteomics (mass spectrometry) have provided growing evidence for the existence of numerous novel 'non-conventional' peptides in eukaryotic organisms, including plants. In animals, mounting evidence indicates that long non-coding RNAs are an important source of SEPs, and that SEPs participate in crucial cellular and physiological processes and can mediate the evolution of novel characteristics. Similar findings are now emerging in plants. The SEP-coding capacity and the full repertoire of functional SEPs within eukaryotic genomes remain unclear, but systematic, large-scale molecular screenings are beginning to address this gap. Here, we review current progress in understanding the plant non-conventional peptidome, explore parallels between plants and animals, and illustrate how findings in animals can help guide plant research on this topic.

真核生物蛋白质组中有相当一部分是由多肽和小蛋白(肽穹)组成的,但大部分是未知的。近年来,在标记为非编码rna的转录本或基因间区发现了可以编码功能肽的短开放阅读框(sorf)。这些sorf编码的肽(sep)由于其体积小且难以在实验和计算中检测而在过去被忽视。然而,对翻译rna(核糖体谱分析)和蛋白质组学(质谱分析)的分析提供了越来越多的证据,证明在真核生物(包括植物)中存在大量新的“非常规”肽。在动物中,越来越多的证据表明,长链非编码rna是sep的重要来源,并且sep参与关键的细胞和生理过程,并可以介导新特征的进化。类似的发现也开始在植物中出现。真核生物基因组的sep编码能力和功能性sep的全部序列尚不清楚,但系统的、大规模的分子筛选正在开始解决这个问题。在这里,我们回顾了目前对植物“非常规”肽穹窿的理解进展,探讨了植物和动物之间的相似之处,并说明了动物的发现如何有助于指导这一主题的植物研究。
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引用次数: 0
DeepPGDB: A novel paradigm for AI-guided interactive plant genomic database. DeepPGDB:人工智能引导的交互式植物基因组数据库的新范式。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-09-08 DOI: 10.1016/j.xplc.2025.101494
Fangping Li, Jiaxuan Chen, Wei Luo, Jieying Liu, Guodong Chen, Binyu Shuai, Zhuangwei Hou, Zhenpeng Gan, Hongyuan Zhao, Penglin Zhan, Changwei Bi, Zefu Wang, Haifei Hu, Shaokui Wang
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引用次数: 0
Structural insights into the catalytic mechanism of the phenylethanoid glycoside rhamnosyltransferase UGT79G15 from Rehmannia glutinosa. 地黄苯乙醇糖苷鼠李糖基转移酶UGT79G15催化机制的结构分析。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-09-25 DOI: 10.1016/j.xplc.2025.101539
Ruolong Ma, Hongli Wei, Yibin Zhuang, Yanan Wu, Zhishuai Li, Yangyang Chen, Jing Huang, Xiaohui Yan, Weidong Liu, Tao Liu

Phenylethanoid glycosides (PhGs) are a group of important natural products widely distributed in medicinal plants and known for their remarkable pharmacological properties. Uridine diphosphate (UDP) glycosyltransferase 79G15 (UGT79G15) from Rehmannia glutinosa catalyzes the conversion of osmanthuside A to osmanthuside B, a key intermediate in the PhG biosynthetic pathway, through the formation of a (1→3) glycosidic bond. In this study, we present the crystal structures of UGT79G15 in its apo form, UDP-bound form, and, notably, its ternary complex containing UDP and a mimic acceptor, forsythiaside A, within its active site. Structural and comparative analyses revealed that UGT79G15 possesses a distinctive funnel-shaped acceptor-binding pocket with a small auxiliary cavity capable of accommodating the 4'-hydroxycinnamoyl group of PhGs, explaining the enzyme's regiospecificity toward the 3'-OH of the acceptor. Additional structural examination and site-directed mutagenesis identified key residues that recognize and stabilize UDP-rhamnose and the sugar acceptor. Among the variants generated, I204W exhibits enhanced catalytic efficiency for osmanthuside A conversion, reaching up to 2.2-fold higher activity than the wild type. This study provides mechanistic insight into the donor specificity and acceptor regioselectivity of PhG 1,3-rhamnosyltransferase and expands the structural understanding of plant UGTs.

苯乙醇苷(Phenylethanoid glycosides, PhGs)是一类重要的天然产物,广泛存在于多种药用植物中,具有重要的药理作用。地黄二磷酸尿苷(UDP)糖基转移酶79G15 (UGT79G15)通过形成一个(1→3)糖苷键,催化桂花苷A转化为桂花苷B,这是PhG生物合成途径中的关键中间体。在这项研究中,我们报道了UGT79G15的载脂蛋白形式,UDP结合形式,最重要的是,它的三元复合物形式包含UDP和模拟受体,连翘苷a,在其活性位点。结构和比较分析表明,UGT79G15具有独特的“漏斗形”受体结合袋,其附带的小洞穴足以容纳PhG的4'-羟基肉桂基,这解释了该酶对PhG的3'-OH的区域特异性。进一步的结构分析和定点诱变探索了该酶的许多变体,并确定了识别和稳定鼠李糖和糖受体的关键残基。同时,在此过程中获得的点变体I204W对桂花苷a的转化具有更高的催化效率,达到野生型的2.2倍。该研究为phg1,3 -鼠李糖基转移酶的供体特异性和受体区域选择性提供了机制见解,并丰富了植物ugt的结构信息。
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引用次数: 0
Cis-regulatory elements co-opting core circadian clock regulator CCA1 underlie enhanced expression of HMA4 for metal hyperaccumulation in Arabidopsis halleri. 顺式调控元件选择核心生物钟调节因子CCA1,是HMA4在拟南芥金属超积累中表达增强的基础。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-10-03 DOI: 10.1016/j.xplc.2025.101540
Leonardo Castanedo, Justyna Cebula, Cécile Nouet, Julien Spielmann, Nedežda Janina, Marc Hanikenne, Ute Krämer

The naturally selected extreme traits of zinc and cadmium hyperaccumulation and hypertolerance in Arabidopsis halleri depend on strongly elevated HEAVY METAL ATPase 4 (HMA4) transcript levels compared to those in the closely related Arabidopsis thaliana. This difference is regulated in cis; AhHMA4 upstream sequences alone are sufficient to confer increased expression, as previously demonstrated using reporter gene fusions stably introduced into both A. halleri and A. thaliana. However, the underlying cis-regulatory divergence specific to A. halleri remains unknown. Here, we identify cis-regulatory metal hyperaccumulation elements (MHEs) that increase AhHMA4 promoter activities by examining stably transformed reporter lines carrying partial deletions or mutations in AhHMA4 upstream sequences. MHE1 (consensus TGTAAC) functions in the distal regions of AhHMA4 promoters, and all three tandem AhHMA4 gene copies share a proximal upstream pair of MHE2 motifs (consensus AAATATCT), corresponding to the evening element. The evening element is a known target of Arabidopsis CIRCADIAN CLOCK-ASSOCIATED 1 (CCA1), a core circadian clock transcription factor that mediates light-dependent and circadian gene expression. We show that the elevated activity of the AhHMA4-1 promoter depends on MHE2 in cis and CCA1 in trans, and it can be recapitulated by introducing an intact pair of MHE2 motifs into the A. thaliana HMA4 promoter using site-directed mutagenesis. We also found that HMA4 transcript levels show diel rhythmicity in A. halleri but not in A. thaliana. In summary, we identify the causal cis-regulatory elements that co-opt a known regulator of diel and seasonal transcriptional rhythms to mediate enhanced expression of a gene critical for a naturally selected extreme trait syndrome.

与亲缘关系密切的拟南芥相比,halleri拟南芥自然选择的锌/镉超积累和超耐受性的极端性状依赖于重金属atp酶4 (HMA4)转录水平的显著升高。这是顺式控制的,这意味着上游AhHMA4序列是足够的,正如之前使用报告基因融合稳定地引入到拟南芥和拟南芥中所证明的那样。然而,潜在的顺式调控突变特异性哈里哈里仍然是未知的。在这里,我们通过检测报告结构的缺失和突变变体稳定转化的细胞系,确定了顺式调控的金属超积累元件(MHE),该元件有助于增加三个串联AhHMA4基因拷贝的启动子活性。MHE1(共识TGTAAC)在AhHMA4启动子的远端区域起作用,所有三个AhHMA4基因拷贝共享一个近端上游的MHE2对(共识AAATATCT, Evening Element, EE)。EE是拟南芥昼夜节律时钟相关1 (CCA1)的已知靶标,CCA1是一种介导光调节基因表达并在昼夜节律时钟中起作用的转录因子。我们发现AhHMA4-1启动子的活性升高取决于顺式中的MHE2和反式中的CCA1,并且通过位点定向诱变在拟南芥HMA4启动子序列中产生一对完整的MHE2来重现。HMA4转录水平在哈里拟南芥中表现出节律性,而在拟南芥中没有。综上所述,我们确定了因果顺式调控因素,这些因素是HMA4转录水平增强的基础,而HMA4转录水平对于自然选择的极端性状综合征和功能至关重要,通过选择昼夜和季节性转录节律的调节因子。
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引用次数: 0
A small peptide APP3-14 disrupts pathogen-insect mutualism by modulating plant MYC2-mediated olfactory defense. 一种小肽APP3-14通过调节植物myc2介导的嗅觉防御来破坏病虫共生。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-10-06 DOI: 10.1016/j.xplc.2025.101544
Pingzhi Zhao, Yanwei Sun, Xiaoyue Chen, Jingyin Zhang, Huan Yang, Xiaojiang Hao, Rongxiang Fang, Jian Ye

The dissemination of insect-borne plant pathogens relies on their ability to influence vector behavior. Certain bacteria-infected plants exhibit increased attractiveness to vectors; however, the underlying mechanisms remain poorly characterized. Huanglongbing (HLB), a devastating citrus disease, is primarily caused by the bacterium "Candidatus Liberibacter asiaticus" (CLas) and transmitted by psyllid vectors. In this study, we demonstrate that the effector protein SDE5, secreted by CLas, suppresses the biosynthesis of volatile terpenoids in host citrus plants, thereby enhancing psyllid attraction. Biochemically, SDE5 functions as an inhibitor of bacterial C-type lysozyme, facilitating both CLas infection and psyllid vector attraction. Two plant U-box (PUB) E3 ligases, PUB10 and PUB21, are recruited by SDE5 to promote ubiquitination and proteasomal degradation of MYC2, a key transcription factor in jasmonate signaling and terpene-based anti-herbivore defenses. Furthermore, SDE5 interferes with MYC2 dimerization, diminishing its ability to activate terpene biosynthesis genes. This dual suppression markedly reduces volatile terpenoid emissions in SDE5-transgenic citrus lines, resulting in increased psyllid attraction and enhanced psyllid fitness. Conversely, the anti-proteolysis peptide 3-14 (APP 3-14), which stabilizes the MYC2 protein and inhibits the HLB pathogen, enhances volatile terpenoid emission and repels psyllids. These findings provide a novel strategy for disrupting mutualistic interactions between plant bacterial pathogens and insect vectors by modulation of olfactory defense.

昆虫传播的植物病原体的传播取决于它们操纵其媒介行为的能力。一些被细菌感染的植物对病媒更有吸引力,但其潜在机制仍然知之甚少。黄龙病(HLB)是柑橘的一种破坏性病害,主要由亚洲假假杆菌(Candidatus Liberibacter asiaticus, CLas)引起,并通过木虱媒介传播。在本研究中,我们发现CLas分泌的效应蛋白SDE5抑制寄主柑橘植物挥发性萜类化合物的生物合成,从而增强木虱载体的吸引力。生物化学上,SDE5作为细菌c型溶菌酶的抑制剂,促进CLas感染和木虱载体吸引。SDE5可招募两个植物U-box (PUB) E3连接酶PUB10和PUB21,促进茉莉酸信号通路和萜类抗草食动物防御的关键转录因子MYC2的泛素化和蛋白酶体降解。此外,SDE5破坏MYC2二聚化,有效削弱其激活萜烯生物合成基因的能力。这种双重抑制功能显著减少了sde5转基因柑橘系挥发性萜类化合物的排放,从而提高了木虱的吸引力和木虱的适应性。相反,抗蛋白水解肽3-14 (APP 3-14)稳定MYC2蛋白,抑制HLB病原体,增加挥发性萜类物质的释放,以抵抗木虱。这些发现为通过操纵嗅觉防御来破坏植物细菌病原体和昆虫媒介之间的互惠联盟提供了一种新的策略。
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引用次数: 0
Wheat powdery mildew resistance gene Pm52/Pm6 from Triticum timopheevii encodes an NLR protein with an integrated PRK domain. 小麦抗白粉病基因Pm52/Pm6编码一个与PRK结构域整合的NLR。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-10-21 DOI: 10.1016/j.xplc.2025.101569
Dan Qiu, Lingli Dong, Chengzhi Jiao, Jinghuang Hu, Yi Liu, Keyu Zhu, Qiuhong Wu, Miaomiao Li, Huaizhi Zhang, Ping Lu, Zihui Zhao, Yiwen Li, Yongxing Chen, Guanghao Guo, Yahui Li, Jingzhong Xie, Gaojie Wang, Wenling Li, Lei Dong, Beibei Li, Yikun Hou, Xuejia Cui, Baoge Huang, Hongkui Fu, Chenchen Hu, Xueyong Zhang, Zhiyong Liu, Hongjie Li
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引用次数: 0
Three PP2C phosphatases modulate FERONIA receptor kinase activity to regulate pollen-stigma interaction in Arabidopsis. 三种PP2C磷酸酶调节FERONIA受体激酶活性调控拟南芥花粉-柱头相互作用
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-07-30 DOI: 10.1016/j.xplc.2025.101468
Lijun Cheng, Zhiwen Liu, Baiyan Lu, Sihan Gao, Junwei Zhao, Chao Li

Pollen hydration represents the initial and critical step in pollen-stigma interactions and is necessary for successful plant fertilization. The FERONIA (FER) receptor kinase regulates pollen hydration by modulating stigmatic reactive oxygen species (ROS) accumulation through rapid alkalinization factor 23/33 (RALF23/33) and pollen coat protein B-class peptide (PCP-B) signaling. However, the function and regulatory mechanism of FER's receptor kinase activity in pollen hydration remain poorly understood. In this study, we found that the kinase-dead form of FERK565R fails to restore stigmatic ROS accumulation and pollen hydration in the fer-4 mutant. By integrating RNA sequencing database analyses with yeast two-hybrid assays, we identified three type 2C phosphatases (PP2Cs)-protein phosphatase 2C clade H 1 (PP2CH1) and clade-E Growth-Regulating 1 and 2 (EGR1 and EGR2)-that interact with FER at the plasma membrane. These PP2Cs dephosphorylate FER at Ser695 and Thr696 within the activation segment, thereby inhibiting its kinase activity. Mutations at these two residues reduced ROS levels in the stigma and increased pollen hydration rates. Altogether, this study reveals a crucial regulatory mechanism of FER signaling, demonstrating that PP2CH1, EGR1, and EGR2 act as negative regulators of FER kinase activity to modulate stigmatic ROS accumulation and promote pollen hydration.

花粉水化是花粉-柱头相互作用的初始和关键步骤,是植物成功受精所必需的。FERONIA (FER)受体激酶通过快速碱化因子23/33 (RALF23/33)和花粉外壳蛋白b类肽(PCP-Bs)信号通路调节柱头活性氧(ROS)积累,从而调控花粉水化。然而,对花粉水化过程中FER受体激酶活性的作用和调控机制尚不清楚。在本研究中,我们发现FERK565R的激酶死亡形式不能恢复fer-4突变体的柱头ROS积累和花粉水化。结合RNA-seq数据库分析和酵母双杂交实验,我们鉴定出3种2C型磷酸酶(PP2C),即蛋白磷酸酶2C clade h1 (PP2CH1), clade E生长调节1和2 (EGR1和EGR2),它们与质膜上的FER相互作用。这三种pp2c使FER在活化段的Ser695和Thr696位点去磷酸化,从而抑制了FER激酶的活性。FER的Ser695和Thr696位点突变导致柱头内ROS水平降低,花粉水化率增加。总之,本研究揭示了FER信号通路的一个重要调控机制,表明pp2c PP2CH1、EGR1和EGR2作为FER激酶活性的负调控因子,从而调节柱头内ROS的积累,促进花粉水化。
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引用次数: 0
ZmHSCF1 enhances Agrobacterium-mediated transformation frequency in commercial maize inbred lines by promoting embryogenic callus proliferation. ZmHSCF1通过促进胚性愈伤组织增殖,提高农杆菌介导的玉米商品自交系转化频率。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-09-18 DOI: 10.1016/j.xplc.2025.101525
Yingshuang Li, Yan Geng, Xiangyu Qing, Xiaoya Yin, Feng Xu, Liangliang Huang, Renzhao Zhu, Baojian Chen, Tianxia Yang, Weibin Song, Haiming Zhao, Jinsheng Lai, Yunlu Shi, Shengnan Liu
{"title":"ZmHSCF1 enhances Agrobacterium-mediated transformation frequency in commercial maize inbred lines by promoting embryogenic callus proliferation.","authors":"Yingshuang Li, Yan Geng, Xiangyu Qing, Xiaoya Yin, Feng Xu, Liangliang Huang, Renzhao Zhu, Baojian Chen, Tianxia Yang, Weibin Song, Haiming Zhao, Jinsheng Lai, Yunlu Shi, Shengnan Liu","doi":"10.1016/j.xplc.2025.101525","DOIUrl":"10.1016/j.xplc.2025.101525","url":null,"abstract":"","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101525"},"PeriodicalIF":11.6,"publicationDate":"2025-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12744725/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145093022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A complete telomere-to-telomere genome assembly of Solanum melongena uncovers key regulators in pan-tissue anthocyanin biosynthesis. 一个完整的端粒到端粒基因组组装茄龙葵揭示泛组织花青素生物合成的关键调控因子。
IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 Epub Date: 2025-09-23 DOI: 10.1016/j.xplc.2025.101533
Qingzhen Wei, Wuhong Wang, Yunzhu Wang, Jiaqi Ai, Tianhua Hu, Haijiao Hu, Jinglei Wang, Yaqin Yan, Hongtao Pang, Na Hu, Chonglai Bao

This study presents a gap-free, telomere-to-telomere (T2T), cytogenetically integrated genome assembly of eggplant (Smel HQ v.2.0), providing insights into universal and tissue-specific roles of SmeMYBs in anthocyanin biosynthesis. This high-quality reference genome will significantly facilitate future genetic and genomic studies in eggplant.

摘要:我们首次构建了茄子的T2T基因组(SmeMYBs v2.0),揭示了SmeMYBs在不同组织花青素生物合成中的具体作用。完整的T2T茄子基因组可以极大地促进茄子遗传和基因组研究的深入和精细化。
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引用次数: 0
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Plant Communications
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