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Characterization of Polarization Holographic Gratings Obtained on Azopolymer Thin Films by Digital Holographic Microscopy 偶氮聚合物薄膜上偏振全息光栅的数字全息显微镜表征
Q3 Physics and Astronomy Pub Date : 2021-09-30 DOI: 10.18287/jbpe21.07.030306
V. Cazac, C. Loshmanschii, E. Achimova, A. Meshalkin, V. Abashkin, V. Podlipnov
. Polarization diffraction gratings are formed by one-step polarization holographic recording in azopolymer thin films. The evolution of the gratings parameters, such as the modulation of diffraction efficiency and relief depth with regard to different exposure dose is analyzed. Phase-shifting digital holographic microscopy is applied for the measurement of the light-induced polarization diffraction gratings. For the accurate hologram acquisition and reconstruction of the complex amplitude transmitted by the gratings, we performed all-optical (without moving components) phase-shifting implemented within in the imaging system of the digital holographic microscope. The experimental measurement results and theoretical predictions were compared and analyzed. © 2021 Journal of Biomedical Photonics & Engineering.
. 采用一步偏振全息记录技术在偶氮聚合物薄膜上形成偏振衍射光栅。分析了衍射效率和浮雕深度等光栅参数随辐照剂量的变化规律。采用移相数字全息显微镜对光致偏振衍射光栅进行了测量。为了准确地获取和重建光栅传输的复振幅,我们在数字全息显微镜成像系统中实现了全光学(无运动元件)相移。对实验测量结果与理论预测结果进行了对比分析。©2021生物医学光子学与工程杂志。
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引用次数: 0
Registration of Regeneration in Planarians from Photographic Images 利用摄影图像进行涡虫再生的登记
Q3 Physics and Astronomy Pub Date : 2021-09-30 DOI: 10.18287/jbpe21.07.030303
K. Tiras, L. Mestetsky, S. Nefedova, N. Lomov
. In this study, an approach to constructing a mathematical model for quantifying the dynamics of regeneration of planarian flatworms in biological experiments is considered, based on an analysis of a series of digital microscopic images. A method is proposed to describe the body shape of a planarian using a continuous morphological model, based on the concept of a medial representation of the worm’s silhouette. The silhouette in this case is a polygon approximating the contours of the planarian’s body. The medial representation of the figure includes a medial axis and a radial function that describes the width of the figure relative to the medial axis. We propose a set of morphological criteria for assessing the dynamics of regeneration based on a continuous morphological model and present the results of computational experiments. © 2021 Journal of Biomedical Photonics & Engineering.
在本研究中,基于对一系列数字显微图像的分析,考虑了一种在生物实验中构建数学模型以量化涡虫再生动力学的方法。基于涡虫轮廓的中间表示概念,提出了一种使用连续形态学模型来描述涡虫体型的方法。这种情况下的轮廓是一个多边形,近似于涡虫的身体轮廓。图形的中间表示包括中间轴线和描述图形相对于中间轴线的宽度的径向函数。我们提出了一套基于连续形态学模型的形态学标准来评估再生动力学,并给出了计算实验的结果。©2021生物医学光子与工程杂志。
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引用次数: 1
A Method for Assessing the Pupil Center Coordinates in Eyetracking with a Free Head Position 一种评估自由头位置眼动中瞳孔中心坐标的方法
Q3 Physics and Astronomy Pub Date : 2021-09-30 DOI: 10.18287/jbpe21.07.030302
Gennadiy I. Gromilin, N. S. Yakovenko
. IR-illuminated Eyetracking systems include cornea reflection and pupil center coordinates detection to calculate the ope rator’ s gaze fixation point. When you turn a view of a large angle, some of the frames are blurred, and the coordinates are unreliable. The article describes a method for determining the center of the pupil in the gaze fixation system for operation at an increased camera frame rate. Comparison with known algorithms is given. The algorithm execution average time is about 1.2 ms on a typical office computer by processing images in fragments of the order of 340x240 pixels. © 2021 Journal of Biomedical Photonics & Engineering.
红外照明的眼动追踪系统包括角膜反射和瞳孔中心坐标检测,以计算操作者的注视注视点。当您将视图转为大角度时,某些帧会变得模糊,并且坐标不可靠。该文章描述了一种在凝视固定系统中确定瞳孔中心的方法,用于在增加的相机帧速率下操作。并与已知算法进行了比较。在典型的办公计算机上,通过处理340x240像素量级的片段中的图像,算法执行的平均时间约为1.2ms。©2021生物医学光子与工程杂志。
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引用次数: 0
Numerical Modeling of Radiation Focusing by Dielectric Microcylinders with Several Layers 多层介质微柱辐射聚焦的数值模拟
Q3 Physics and Astronomy Pub Date : 2021-09-30 DOI: 10.18287/jbpe21.07.030304
A. Savelyeva, E. Kozlova
In this paper, the light focusing by dielectric microcylinders with several layers was numerically studied by using the finite element method implemented in COMSOL Multiphysics. Different materials for the top layer were proposed during the research (refractive indices are 1.59, 1.8, 1.9) while the core was proposed from fused silica glass (refractive index is 1.45). It was shown that the dielectric shell allows to increases the maximum intensity of the formed photonic nanojet. Choosing the design of a two-layered microcylinder it is possible to form a compact focal spot (TE-polarization) or increase the length of the produced photonic nanojet. Obtained results were verified by another software package FullWAVE which implements a finite difference time domain method. The simulation results are in good agreement. © 2021 Journal of Biomedical Photonics & Engineering.
本文利用COMSOL Multiphysics软件实现的有限元方法,对多层介质微柱的光聚焦进行了数值研究。研究中提出了不同的顶层材料(折射率分别为1.59、1.8、1.9),芯层材料采用熔融石英玻璃(折射率为1.45)。结果表明,介质壳可以提高形成的光子纳米射流的最大强度。选择双层微柱结构可以形成紧凑的焦斑(te偏振)或增加产生的光子纳米射流的长度。用另一个实现时域有限差分法的软件包FullWAVE对所得结果进行了验证。仿真结果与仿真结果吻合较好。©2021生物医学光子学与工程杂志。
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引用次数: 0
Phthalocyanines Structure Versus Photodynamic Effectiveness towards Pathogenic Microorganisms: Our Recent Experience 酞菁结构对光动力对致病微生物的作用:我们最近的经验
Q3 Physics and Astronomy Pub Date : 2021-09-25 DOI: 10.18287/jbpe21.07.040202
V. Mantareva, I. Angelov, Meliha Syuleyman, V. Kussovski, I. Eneva, L. Avramov, E. Borisova
. The present review paper aims to summarize our recent experience in research and development of new phthalocyanine complexes and investigations of the main photophysical, photochemical and photobiological properties which are related to antimicrobial photodynamic therapy (aPDT) as alternative method for inactivation of the resistant pathogens. The effect of functionalization of Zn(II) phthalocyanine (ZnPc) with biologically-active natural substances such as amino acids, sugars and steroids was studied in comparison to the basic ZnPc ring molecule. The structural features of the substitution groups were chosen to facilitate the main properties responsible for PDT outcome. For example, the linkage groups of amino acids tyrosine, phenylalanine, lysine and arginine have positive charge in physiological media to the better attachment to bacterial wall and some of them have a good fluorescence for a contribution to the visualization of the infected area. Also, ZnPcs linked to sugars and steroids was expecting to possess receptor specific selectivity. The physicochemical properties of the novel functionalized ZnPcs are presented in respect to their efficiency for a number of pathogenic bacterial and fungal species. Additionally, the complexes of two heavy metal ions such as lutetium(III) (Lu(III)) and tin(IV) (Sn(IV)) were synthesized and evaluated for antimicrobial PDT. These complexes were designed with the same structural skeleton as our previous water-soluble methylpiridyloxy-substituted phthalocyanine complexes with zinc (II), silicon (IV), germanium (IV), indium (III) and gallium (III), all with relatively promising antibacterial efficiency. © 2021 Journal of Biomedical Photonics & Engineering.
本文旨在总结我们最近在新型酞菁配合物的研究和开发方面的经验,以及与抗微生物光动力疗法(aPDT)作为灭活耐药病原体的替代方法相关的主要光物理、光化学和光生物特性的研究。与碱性ZnPc环分子相比,研究了用生物活性天然物质如氨基酸、糖和类固醇对Zn(II)酞菁(ZnPc)的功能化作用。选择取代基团的结构特征是为了促进PDT结果的主要性质。例如,氨基酸酪氨酸、苯丙氨酸、赖氨酸和精氨酸的连接基团在生理介质中具有正电荷,以更好地附着在细菌壁上,其中一些具有良好的荧光,有助于感染区域的可视化。此外,与糖和类固醇连接的ZnPcs有望具有受体特异性选择性。介绍了新型功能化ZnPcs的物理化学性质及其对多种病原细菌和真菌的效率。此外,合成了两种重金属离子的络合物,如镥(III)(Lu(III))和锡(IV)(Sn(IV)),并对其抗微生物PDT进行了评价。这些配合物的结构骨架与我们以前的水溶性甲基铱氧基取代酞菁与锌(II)、硅(IV)、锗(IV),铟(III)和镓(III)的配合物相同,所有这些都具有相对有希望的抗菌效率。©2021生物医学光子与工程杂志。
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引用次数: 2
Accuracy of Common Motion Estimators in Wave-Based Optical Coherence Elastography 波基光学相干弹性成像中常用运动估计器的精度
Q3 Physics and Astronomy Pub Date : 2021-09-21 DOI: 10.18287/jbpe21.07.040303
Justin R. Rippy, Manmohan Singh, S. Aglyamov, K. Larin
Motion estimators are commonly used in shear wave optical coherence elastography to compute small displacements. This work focuses on comparing three motion estimators: Kasai, Loupas, and the vector method. Our results show that the vector method is superior in low-SNR, low-amplitude situations for group velocity calculation and profile reconstruction. © 2021 Journal of Biomedical Photonics & Engineering.
在剪切波光学相干弹性成像中,运动估计器通常用于计算小位移。本文重点比较了三种运动估计器:Kasai、Loupas和矢量方法。我们的结果表明,矢量方法在低信噪比、低振幅的情况下对群速度计算和剖面重建具有优越性。©2021生物医学光子与工程杂志。
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引用次数: 1
Tissue Spectroscopy and Optical Clearing of Colorectal Mucosa in the Pursuit of New Cancer Diagnostic Approaches 结直肠粘膜的组织光谱学和光学清除在寻求新的癌症诊断方法中的应用
Q3 Physics and Astronomy Pub Date : 2021-09-08 DOI: 10.18287/JBPE21.07.040302
Luís Fernandes, H. Silva, Inês H Martins, S. Carvalho, I. Carneiro, R. Henrique, V. Tuchin, Luís Manuel Couto Oliveira
In this paper we present three studies that demonstrate the applicability of spectroscopy methods and optical clearing treatments in pathology identification and monitoring. In the first study, by obtaining the absorption spectra of human healthy and pathological (adenocarcinoma) colorectal mucosa tissues, it was possible to identify a higher content of a pigment in the diseased tissues. This study also shows that machine learning methods can be used to reach the same differentiated results  in vivo  through diffuse reflectance spectroscopy. In the second study, the combination of collimated transmittance spectroscopy with optical clearing treatments allowed to obtain the diffusion coefficients of glucose in healthy and pathological colorectal mucosa as:  D glucose =5.8x 10 – 7  cm 2 /s and  D glucose =4.4x 10 – 7  cm 2 /s, respectively. This study also demonstrated that the diseased tissues contains about 5% more mobile water than the healthy tissues. The third study was performed to evaluate the protein dissociation mechanism of optical clearing. By treating both healthy and pathological colorectal mucosa tissues with 93%-glycerol, a protein dissociation rate of about 3 times higher was obtained for the pathological mucosa. All the discriminating parameters that result from these studies can be obtained in the  in vivo  situation through diffuse reflectance spectroscopy and further studies to evaluate their values in different stages of cancer progression are of great importance to develop disease monitoring protocols.
在本文中,我们提出了三项研究,证明了光谱方法和光学清除处理在病理学鉴定和监测中的适用性。在第一项研究中,通过获得人类健康和病理性(腺癌)结肠直肠粘膜组织的吸收光谱,可以确定病变组织中较高含量的色素。这项研究还表明,机器学习方法可以通过漫反射光谱在体内达到相同的差异化结果。在第二项研究中,将准直透射光谱与光学清除处理相结合,可以获得葡萄糖在健康和病理性结肠直肠粘膜中的扩散系数,分别为:D葡萄糖=5.8x 10–7 cm 2/s和D葡萄糖=4.4x 10–7cm 2/s。这项研究还表明,患病组织比健康组织多含约5%的流动水。第三项研究评估了光学清除剂的蛋白质解离机制。通过用93%的甘油治疗健康和病理性结肠直肠粘膜组织,病理性粘膜的蛋白质解离率提高了约3倍。这些研究得出的所有判别参数都可以通过漫反射光谱在体内情况下获得,进一步研究评估其在癌症进展不同阶段的价值对制定疾病监测方案具有重要意义。
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引用次数: 0
A Review of EEG Signal Analysis for Diagnosis of Neurological Disorders using Machine Learning 脑电信号分析在神经系统疾病诊断中的应用综述
Q3 Physics and Astronomy Pub Date : 2021-09-07 DOI: 10.18287/10.18287/JBPE21.07.040201
Vandana Joshi, Nirali R. Nanavati
Neurological disorders are diseases that affect the brain and the central autonomic nervous systems. These disorders take a huge toll on an individual's health and general well-being. After cardiovascular diseases, neurological disorders are the main cause of death. These disorders include epilepsy, Alzheimer ’ s disease, dementia, cerebrovascular diseases including stroke, migraine, Parkinso n ’s disease and numerous other disorders. This manuscript presents a state-of-the-art consolidated review of research on the diagnosis of the three most common neurological disorders using electroencephalogram (EEG) signals with machine learning techniques. The disorders discussed in this manuscript are the more prevalent disorders  like  epilepsy, Attention-deficit/hyperactivity disorder (ADHD), and Alzheimer’s disease. This manuscript helps in understanding the details about EEG signal processing for diagnosis and analysis of neurological disorders along with a discussion of the datasets, limitations, results and research scope of the various techniques.
神经系统疾病是影响大脑和中枢自主神经系统的疾病。这些疾病对个人健康和整体福祉造成了巨大的损害。继心血管疾病之后,神经系统疾病是导致死亡的主要原因。这些疾病包括癫痫、阿尔茨海默病、痴呆、脑血管疾病,包括中风、偏头痛、帕金森氏病和许多其他疾病。这份手稿提出了对使用脑电图(EEG)信号和机器学习技术诊断三种最常见神经系统疾病的研究的最新综合综述。本文讨论的疾病是更普遍的疾病,如癫痫、注意力缺陷/多动障碍(ADHD)和阿尔茨海默病。这篇手稿有助于理解脑电图信号处理的细节,用于诊断和分析神经系统疾病,并讨论了各种技术的数据集、局限性、结果和研究范围。
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引用次数: 4
Photodynamic Action in Thin Sensitized Layers: Estimating the Utilization of Light Energy 薄感光层的光动力学作用:估计光能的利用
Q3 Physics and Astronomy Pub Date : 2021-07-28 DOI: 10.18287/jbpe21.07.040301
G. Meerovich, I. Romanishkin, E. Akhlyustina, M. Strakhovskaya, E. Kogan, I. Angelov, V. Loschenov, E. Borisova
. The result of photodynamic action significantly depends on the density of the light dose absorbed by the photosensitizer. The efficiency of using light to excite photosensitizer molecules and minimization of its loss plays an important role in ensuring the overall success of the process. When carrying out photodynamic treatment of thin sensitized layers (such as inactivation of surface pathogens or in vitro screening studies of photosensitizers), only a part of the light dose is absorbed in the layer, while a significant part is lost, especially at low concentrations of the photosensitizer. In this work, we evaluate the decrease in absorbed light dose depending on the extinction and concentration of the photosensitizer in a thin sensitized layer, the shape of its absorption spectrum, and the shape of the excitation light source spectrum. It was found out that a significant loss of the absorbed dose occurs upon excitation of photosensitizers, especially with low extinction, when using light sources with a broad emission spectrum. This loss must be taken into consideration when predicting the results of photodynamic exposure and optimizing its tactics. © 2021 Journal of Biomedical Photonics & Engineering.
. 光动力作用的结果在很大程度上取决于光敏剂吸收的光剂量的密度。利用光激发光敏剂分子的效率及其损失的最小化在确保整个过程的成功中起着重要的作用。在对薄的敏化层进行光动力处理时(如表面病原体灭活或光敏剂的体外筛选研究),层中只有一部分光剂量被吸收,而相当一部分光剂量丢失,特别是在低浓度的光敏剂下。在这项工作中,我们评估了吸收光剂量的减少取决于光敏剂在薄敏化层中的消光和浓度,其吸收光谱的形状和激发光源光谱的形状。研究发现,当使用发射光谱较宽的光源时,光敏剂的激发,特别是低消光时,吸收剂量的损失很大。在预测光动力曝光的结果和优化其策略时,必须考虑到这种损失。©2021生物医学光子学与工程杂志。
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引用次数: 5
The Sedimentation Rate of Free Erythrocytes and Their Associates, the Influence of a Standing Ultrasonic Wave 游离红细胞及其相关物质的沉积速率及驻波的影响
Q3 Physics and Astronomy Pub Date : 2021-07-28 DOI: 10.18287/JBPE21.07.040501
V. Doubrovski, S. V. Markov, S. O. Torbin, E. P. Karpocheva
A comparative analysis of the sedimentation rates of free erythrocytes and their associates – aggregates and agglutinates was carried out. The influence of a standing ultrasonic (US) wave on the blood sedimentation process was investigated. The problem was dictated not only by a purely scientific interest in the sedimentation of micro–objects in a liquid medium, but from a practical point of view also – the development of an instrumental acousto–optical method for human blood group typing. Registration of the blood sedimentation process was carried out by means of digital video recording with subsequent computer processing of the photographic images obtained. The magnitude of blood sedimentation rate was experimentally determined for various samples and conditions: 1) blood solutions with / without ultrasound exposure for different time dosages; 2) a mixture of blood samples with hemagglutinating substances (Tsoliklon) without / with ultrasonic action both for a positive agglutination reaction (formation of agglutinates) and negative ones (absence of agglutinates). Two approaches were used to process the photographic images: 1) in the case of agglutinates sedimentation the discrete counting and analysis of agglutinate parameters were used; 2) in other cases, the blood sedimentation rate was determined by the movement of the "supernatant – sediment" (plasma solution – erythrocytes mass) boundary. For the experimental conditions accepted the blood sedimentation rates were compared and, correspondently, the influence of the ultrasonic standing wave upon the process under study was estimated. It was shown that in the presence of ultrasound the sedimentation rate of RBC agglutinates (positive agglutination reaction) is more than an order higher than the sedimentation rate of free erythrocytes and their aggregates (negative agglutination reaction). Such a great difference in the sedimentation rates of agglutinates in comparison with free erythrocytes and their aggregates makes it possible to obtain a high degree of resolution of acousto–optical method for instrumental blood typing, and, hence, high reliability in blood group determination.
对游离红细胞及其相关聚集体和凝集素的沉降速率进行了比较分析。研究了驻波对血液沉积过程的影响。这个问题不仅是由对液体介质中微小物体沉积的纯粹科学兴趣决定的,而且从实践的角度来看,也是由人类血型分型仪器声光方法的发展决定的。通过数字视频记录以及随后对所获得的照片图像的计算机处理来进行血液沉积过程的配准。实验测定了不同样品和条件下的血液沉降率大小:1)不同时间剂量的有/无超声照射的血液溶液;2) 血液样品与血凝物质(Tsoliklon)的混合物,没有/有用于阳性凝集反应(形成凝集物)和阴性凝集反应(不存在凝集物)的超声作用。两种方法用于处理照片图像:1)在凝集物沉淀的情况下,使用凝集物参数的离散计数和分析;2) 在其他情况下,血液沉降率由“上清液-沉积物”(血浆溶液-红细胞质量)边界的运动决定。在接受的实验条件下,比较了血液沉降率,并相应地估计了超声波驻波对研究过程的影响。结果表明,在超声存在下,红细胞凝集物的沉降速率(阳性凝集反应)比游离红细胞及其聚集体的沉降速率高出一个数量级以上(阴性凝集反应)。与游离红细胞及其聚集体相比,凝集素的沉积速率存在如此大的差异,这使得有可能获得用于仪器血型分型的声光方法的高分辨率,从而获得血型测定的高可靠性。
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引用次数: 0
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Journal of Biomedical Photonics and Engineering
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