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Mycobacteriophages and Their Applications. 噬分枝杆菌病毒及其应用。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-27 DOI: 10.3390/antibiotics13100926
Andrea Bonacorsi, Caterina Ferretti, Mariagrazia Di Luca, Laura Rindi

Mycobacterial infections caused by tuberculous and non-tuberculous strains pose significant treatment challenges, especially among immunocompromised patients. Conventional antibiotic therapies often fail due to bacterial resistance, highlighting the need for alternative therapeutic strategies. Mycobacteriophages are emerging as promising candidates for the treatment of mycobacteria. This review comprehensively explores phage isolation, characterization, and clinical applications. Despite the need for more extensive in vitro and in vivo studies, existing evidence shows their efficacy against both sensitive and antibiotic-resistant mycobacterial strains, even under disease-mimicking conditions, particularly when used in cocktails to minimize resistance development. Mycobacteriophages can be engineered and evolved to overcome limitations associated with lysogeny and narrow host range. Furthermore, they exhibit activity in ex vivo and in vivo infection models, successfully targeting mycobacteria residing within macrophages. Delivery methods such as bacterial and liposomal vectors facilitate their entry into human cells. Considering the potential for phage-treatment-induced bacterial resistance, as described in this review, the combination of mycobacteriophages with antibiotics shows efficacy in countering mycobacterial growth, both in the laboratory setting and in animal models. Interestingly, phage-encoded products can potentiate the activity of relevant antibiotics. Finally, the application of phages in different compassionate cases is reported. The positive outcomes indicate that phage therapy represents a promising solution for the treatment of antibiotic-resistant mycobacteria.

结核菌株和非结核菌株引起的分枝杆菌感染给治疗带来了巨大挑战,尤其是在免疫力低下的患者中。传统的抗生素疗法往往会因细菌耐药性而失败,这凸显了对替代治疗策略的需求。噬菌体正在成为治疗分枝杆菌的有前途的候选药物。这篇综述全面探讨了噬菌体的分离、表征和临床应用。尽管还需要进行更广泛的体外和体内研究,但现有证据表明,噬菌体对敏感和耐抗生素的分枝杆菌菌株都有疗效,即使在模拟疾病的条件下也是如此,尤其是在鸡尾酒疗法中使用时,能最大限度地减少耐药性的产生。噬分枝杆菌病毒可以通过工程设计和进化来克服溶解基因和宿主范围狭窄的限制。此外,噬分枝杆菌病毒在体内外感染模型中均表现出活性,可成功针对巨噬细胞内的分枝杆菌。细菌和脂质体载体等传递方法有助于它们进入人体细胞。考虑到噬菌体治疗可能导致细菌产生抗药性,正如本综述所述,在实验室环境和动物模型中,噬菌体与抗生素的结合显示出对抗分枝杆菌生长的功效。有趣的是,噬菌体编码产物可以增强相关抗生素的活性。最后,报告了噬菌体在不同病例中的应用。积极的结果表明,噬菌体疗法是治疗耐抗生素分枝杆菌的一种有前途的解决方案。
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引用次数: 0
Antimicrobial Use in Cats in a University Veterinary Hospital in Central Italy: A Retrospective Study. 意大利中部一所大学兽医院中猫的抗菌药使用情况:回顾性研究
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-27 DOI: 10.3390/antibiotics13100927
Matilde Vernaccini, Lucia De Marchi, Angela Briganti, Ilaria Lippi, Veronica Marchetti, Valentina Meucci, Luigi Intorre

Background: Monitoring antimicrobial use is crucial for understanding current prescribing practices. Such information helps in establishing stewardship programs for effectively using antimicrobials and combating resistance to them. Objectives: This study describes how antimicrobials are prescribed at the Veterinary Teaching Hospital of the University of Pisa and compares how the internal medicine and intensive care units differ in their usage of antimicrobials. Methods: The study involved cats that were presented in the units in 2021 and 2022. Antimicrobial prescriptions were obtained via the hospital's management software (OCIROE). Results: In a population of 1164 non-surgical cats with 397 antimicrobials prescribed, the most prescribed ones were amoxicillin-clavulanic acid in the internal medicine unit and ampicillin in the intensive care unit. Twenty-five percent of all antimicrobials were Highest-Priority Critically Important Antimicrobials or Antimicrobial Advice Ad Hoc Expert Group Category B. The oral route was the main route of administration in the internal medicine unit, while parenteral was the most common route used in the intensive care unit. Most antimicrobials were prescribed to treat pathologic conditions affecting the urinary (39%), gastroenteric (21%), respiratory (13%), and integumentary (12%) systems. A diagnosis, accurate dosage, and the use of species-approved medications were recorded in the antimicrobial prescriptions. However, only 11% of these prescriptions were supported by antimicrobial susceptibility tests. Conclusions: These results suggest room for improvement, particularly in increasing the use of antimicrobial susceptibility testing to ensure more targeted antimicrobial therapy. Given the importance of antimicrobial resistance and the One Health approach, the study also highlights the need to consider the broader impact of antimicrobial use in animals, including the potential contribution to resistance in bacteria that affect both animal and human health.

背景:监测抗菌药物的使用情况对于了解当前的处方做法至关重要。这些信息有助于制定有效使用抗菌药物和消除抗药性的管理计划。研究目的本研究描述了比萨大学兽医教学医院如何开具抗菌药处方,并比较了内科和重症监护室在使用抗菌药方面的差异。研究方法:研究对象为 2021 年和 2022 年在这些科室就诊的猫。抗菌药处方通过医院的管理软件(OCIROE)获得。研究结果在1164只非手术猫中,共开出了397种抗菌药物,内科病房开出最多的抗菌药物是阿莫西林-克拉维酸,重症监护病房开出最多的抗菌药物是氨苄西林。所有抗菌药物中有 25% 属于最高优先级的 "极其重要抗菌药物 "或 "抗菌药物建议特设专家组 B 类抗菌药物"。口服途径是内科病房的主要给药途径,而肠外给药是重症监护病房最常用的给药途径。大多数抗菌药物用于治疗影响泌尿系统(39%)、肠胃系统(21%)、呼吸系统(13%)和皮肤系统(12%)的病症。抗菌药处方中记录了诊断、准确剂量和使用物种认可的药物。然而,只有 11% 的处方有抗菌药物药敏试验的支持。结论:这些结果表明还有改进的余地,特别是在增加抗菌药物药敏试验的使用方面,以确保更有针对性的抗菌治疗。鉴于抗菌药耐药性和 "一体健康 "方法的重要性,本研究还强调有必要考虑在动物身上使用抗菌药的更广泛影响,包括可能导致影响动物和人类健康的细菌产生耐药性。
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引用次数: 0
A Novel Bifidobacterium longum Subsp. longum T1 Strain from Cow's Milk: Homeostatic and Antibacterial Activity against ESBL-Producing Escherichia coli. 牛乳中的新型长双歧杆菌亚种 T1 菌株:对产 ESBL 大肠杆菌的同源性和抗菌活性
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-27 DOI: 10.3390/antibiotics13100924
Andrey V Machulin, Vyacheslav M Abramov, Igor V Kosarev, Evgenia I Deryusheva, Tatiana V Priputnevich, Alexander N Panin, Ashot M Manoyan, Irina O Chikileva, Tatiana N Abashina, Dmitriy A Blumenkrants, Olga E Ivanova, Tigran T Papazyan, Ilia N Nikonov, Nataliya E Suzina, Vyacheslav G Melnikov, Valentin S Khlebnikov, Vadim K Sakulin, Vladimir A Samoilenko, Alexey B Gordeev, Gennady T Sukhikh, Vladimir N Uversky, Andrey V Karlyshev

Background/Objectives: The global emergence of antibiotic-resistant zooanthroponotic Escherichia coli strains, producing extended-spectrum beta-lactamases (ESBL-E) and persisting in the intestines of farm animals, has now led to the development of a pandemic of extra-intestinal infectious diseases in humans. The search for innovative probiotic microorganisms that eliminate ESBL-E from the intestines of humans and animals is relevant. Previously, we received three isolates of bifidobacteria: from milk of a calved cow (BLLT1), feces of a newborn calf (BLLT2) and feces of a three-year-old child who received fresh milk from this calved cow (BLLT3). Our goal was to evaluate the genetic identity of BLLT1, BLLT2, BLLT3 isolates using genomic DNA fingerprinting (GDF), to study the tolerance, adhesion, homeostatic and antibacterial activity of BLLT1 against ESBL-E. Methods: We used a complex of microbiological, molecular biological, and immunological methods, including next generation sequencing (NGS). Results: GDF showed that DNA fragments of BLLT2 and BLLT3 isolates were identical in number and size to DNA fragments of BLLT1. These data show for the first time the possibility of natural horizontal transmission of BLLT1 through with the milk of a calved cow into the intestines of a calf and the intestines of a child. BLLT1 was resistant to gastric and intestinal stresses and exhibited high adhesive activity to calf, pig, chicken, and human enterocytes. This indicates the unique ability of BLLT1 to inhabit the intestines of animals and humans. We are the first to show that BLLT1 has antibacterial activity against ESBL-E strains that persist in humans and animals. BLLT1 produced 145 ± 8 mM of acetic acid, which reduced the pH of the nutrient medium from 6.8 to 5.2. This had an antibacterial effect on ESBL-E. The genome of BLLT1 contains ABC-type carbohydrate transporter gene clusters responsible for the synthesis of acetic acid with its antibacterial activity against ESBL-E. BLLT1 inhibited TLR4 mRNA expression induced by ESBL-E in HT-29 enterocytes, and protected the enterocyte monolayers used in this study as a bio-model of the intestinal barrier. BLLT1 increased intestinal alkaline phosphatase (IAP) as one of the main molecular factors providing intestinal homeostasis. Conclusions: BLLT1 shows promise for the creation of innovative functional nutritional products for humans and feed additives for farm animals that will reduce the spread of ESBL-E strains in the food chain.

背景/目的:全球范围内出现了对抗生素产生耐药性的动物源性大肠埃希氏菌株,这些菌株可产生广谱β-内酰胺酶(ESBL-E)并在农场动物肠道中持续存在,现已导致人类肠道外传染病的大流行。寻找能消除人类和动物肠道中 ESBL-E 的创新益生微生物具有现实意义。此前,我们从一头产犊牛的牛奶(BLLT1)、一头新生小牛的粪便(BLLT2)和一名从这头产犊牛那里获得鲜牛奶的三岁儿童的粪便(BLLT3)中获得了三种双歧杆菌分离物。我们的目标是利用基因组 DNA 指纹图谱(GDF)评估 BLLT1、BLLT2 和 BLLT3 分离物的遗传特性,研究 BLLT1 对 ESBL-E 的耐受性、粘附性、同源性和抗菌活性。方法:我们使用了包括新一代测序(NGS)在内的微生物学、分子生物学和免疫学综合方法。结果:GDF 显示,BLLT2 和 BLLT3 分离物的 DNA 片段在数量和大小上与 BLLT1 的 DNA 片段相同。这些数据首次表明,BLLT1 有可能通过犊牛的乳汁自然水平传播到犊牛的肠道和儿童的肠道。BLLT1 对胃肠道应激具有抵抗力,对小牛、猪、鸡和人的肠细胞具有很高的粘附活性。这表明 BLLT1 具有在动物和人类肠道中栖息的独特能力。我们首次发现 BLLT1 对人类和动物体内持续存在的 ESBL-E 菌株具有抗菌活性。BLLT1 产生 145 ± 8 mM 的乙酸,将营养培养基的 pH 值从 6.8 降至 5.2。这对 ESBL-E 有抗菌作用。BLLT1 的基因组含有 ABC 型碳水化合物转运体基因簇,负责合成乙酸,并对 ESBL-E 具有抗菌活性。BLLT1 可抑制 ESBL-E 在 HT-29 肠细胞中诱导的 TLR4 mRNA 表达,并保护本研究中用作肠屏障生物模型的肠细胞单层。BLLT1能增加肠道碱性磷酸酶(IAP),而IAP是维持肠道平衡的主要分子因子之一。结论BLLT1 有望创造出创新的人类功能性营养产品和农场动物饲料添加剂,从而减少 ESBL-E 菌株在食物链中的传播。
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引用次数: 0
Trends in Antimicrobial Resistance of Uropathogens Isolated from Urinary Tract Infections in a Tertiary Care Hospital in Dhaka, Bangladesh. 孟加拉国达卡一家三级医院从尿路感染中分离出的尿路病原体的抗菌药耐药性趋势。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-27 DOI: 10.3390/antibiotics13100925
Sara Sadia Chowdhury, Promi Tahsin, Yun Xu, Abu Syed Md Mosaddek, Howbeer Muhamadali, Royston Goodacre

Background/Objectives: Urinary tract infection (UTI) is a prevalent microbial infection in medical practise, leading to significant patient morbidity and increased treatment costs, particularly in developing countries. This retrospective study, conducted at a tertiary care hospital in Dhaka, Bangladesh, aims to examine the antimicrobial resistance (AMR) patterns of uropathogens and evaluate whether these patterns are influenced by demographic factors such as gender, age, or patient status. Methods: Standard microbiological techniques were used to identify uropathogens, and AMR patterns were determined using the Kirby-Bauer disc diffusion method. Results: Out of 6549 urine samples, 1001 cultures were positive. The infection was more prevalent in females compared to males. The incidence of UTIs in children aged 0-10 years accounted for 12.59% of the total cases, with this age group also exhibiting the highest rate of polymicrobial infections. Among the bacterial uropathogens, 71.19% of isolates were multidrug resistant (MDR) and 84.27% were resistant to at least one antibiotic. Escherichia coli (n = 544, 73.90% MDR) and Klebsiella species (n = 143, 48.95% MDR) were the most common Gram-negative uropathogens, while Enterococcus species (n = 78, 94.87% MDR) was the predominant Gram-positive isolate in this study. Our results indicate that most uropathogens showed resistance against ceftazidime, followed by cefuroxime, trimethoprim-sulfamethoxazole, amoxicillin-clavulanate, and netilmicin. Moderate levels of resistance were observed against ciprofloxacin, levofloxacin, aztreonam, and cefpodoxime. Conclusions: Amikacin was observed to be effective against Gram-negative uropathogens, whereas cefixime was more active against Gram-positive microorganisms, such as Enterococcus species. Moreover, a principal coordinate analysis (PCoA) depicted no significant influence of gender, patient status, or age on AMR patterns. For the continued usefulness of most antibiotics, periodic analysis of the AMR patterns of uropathogens can help assess the rise of MDR bacteria, and therefore guide the selection of appropriate antibiotic treatment strategies.

背景/目标:尿路感染(UTI)是医疗实践中普遍存在的一种微生物感染,导致患者发病率和治疗成本大幅上升,尤其是在发展中国家。这项回顾性研究在孟加拉国达卡的一家三级护理医院进行,旨在检查泌尿道病原体的抗菌药耐药性(AMR)模式,并评估这些模式是否受性别、年龄或患者状况等人口统计学因素的影响。研究方法使用标准微生物学技术鉴定尿路病原体,并使用柯比-鲍尔盘扩散法确定 AMR 模式。结果在 6549 份尿液样本中,有 1001 份培养呈阳性。女性感染率高于男性。0-10 岁儿童尿路感染的发病率占病例总数的 12.59%,该年龄组的多菌感染率也最高。在细菌性尿路病原体中,71.19%的分离株具有多重耐药性(MDR),84.27%的分离株对至少一种抗生素具有耐药性。大肠埃希菌(n = 544,73.90% MDR)和克雷伯菌(n = 143,48.95% MDR)是最常见的革兰氏阴性尿路病原体,而肠球菌(n = 78,94.87% MDR)是本研究中最主要的革兰氏阳性分离菌。我们的研究结果表明,大多数尿路病原体对头孢他啶产生耐药性,其次是头孢呋辛、三甲双氨-磺胺甲噁唑、阿莫西林-克拉维酸和奈替米星。对环丙沙星、左氧氟沙星、阿曲南和头孢泊肟也有中度耐药性。结论阿米卡星对革兰氏阴性尿路病原体有效,而头孢克肟对革兰氏阳性微生物(如肠球菌)更有效。此外,主坐标分析(PCoA)显示,性别、患者状况或年龄对 AMR 模式没有显著影响。为了使大多数抗生素继续发挥作用,定期分析尿路病原体的 AMR 模式有助于评估 MDR 细菌的增加情况,从而指导选择适当的抗生素治疗策略。
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引用次数: 0
Primary Healthcare Physicians' Insufficient Knowledge Is Associated with Antibiotic Overprescribing for Acute Upper Respiratory Tract Infections in China: A Cross-Sectional Study. 中国初级保健医生知识不足与急性上呼吸道感染抗生素处方过量有关:一项横断面研究。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-26 DOI: 10.3390/antibiotics13100923
Muhtar Kadirhaz, Yushan Zhang, Naveel Atif, Wenchen Liu, Wenjing Ji, Nan Zhao, Jin Peng, Sen Xu, Miaomiao Xu, Chengzhou Tang, Yu Fang, Jie Chang

Objectives: Overuse of antibiotics in healthcare remains prevalent and requires urgent attention in China, particularly in primary healthcare (PHC) facilities. This study aimed to describe the patterns of antibiotic prescriptions for acute upper respiratory tract infections (URTIs) in PHC facilities in China and to investigate how PHC physicians' knowledge influences their antibiotic prescribing behavior.

Methods: A cross-sectional survey linking physician questionnaire responses and their prescription data was conducted in Shaanxi Province, China. The proportions of URTI visits that received at least one antibiotic, combined antibiotics, and broad-spectrum antibiotics were the main outcomes reflecting antibiotic prescribing behavior. Multivariate mixed-effects logistic regressions were applied to analyze the relationship between PHC physicians' knowledge about antibiotics and their antibiotic prescribing behavior.

Results: A total of 108 physicians filled out the questionnaires between February 2021 and July 2021, and a sample of 11,217 URTI visits attended by these physicians from 1 January 2020 to 31 December 2020 were included in the analysis. The overall mean score of our respondents on the knowledge questions was 5.2 (total score of 10). Over sixty percent (61.2%; IQR 50.2-72.1) of the URTI visits received antibiotics. The percentages of URTI visits prescribed with combined and broad-spectrum antibiotics were 7.8% (IQR 2.3-10.2) and 48.3% (IQR 36.7-58.7), respectively. Third-generation cephalosporins were the most frequently used antibiotics. Physicians with lower antibiotic knowledge scores were more inclined to prescribe antibiotics (p < 0.001), combined antibiotics (p = 0.001), and broad-spectrum antibiotics (p < 0.001).

Conclusions: Physicians' insufficient knowledge was significantly associated with antibiotic overprescribing. Professional training targeting physicians' knowledge of antibiotics is urgently needed to improve the rational use of antibiotics in grassroots healthcare facilities in China.

目的:在中国,尤其是在基层医疗卫生机构中,过度使用抗生素的现象仍然普遍存在,亟需引起重视。本研究旨在描述中国初级卫生保健机构中急性上呼吸道感染(URTI)的抗生素处方模式,并探讨初级卫生保健机构医生的知识水平如何影响其抗生素处方行为:方法: 在中国陕西省开展了一项横断面调查,将医生的问卷回答与处方数据联系起来。至少使用一种抗生素、联合使用抗生素和广谱抗生素的尿毒症就诊比例是反映抗生素处方行为的主要结果。采用多变量混合效应逻辑回归分析了初级保健医生的抗生素知识与抗生素处方行为之间的关系:共有 108 名医生在 2021 年 2 月至 2021 年 7 月期间填写了调查问卷,这些医生在 2020 年 1 月 1 日至 2020 年 12 月 31 日期间接诊的 11,217 例 URTI 患者被纳入分析样本。受访者在知识问题上的总平均分为 5.2 分(总分 10 分)。超过六成(61.2%;IQR 50.2-72.1)的 URTI 就诊者使用了抗生素。在就诊的 URTI 患者中,使用联合抗生素和广谱抗生素的比例分别为 7.8%(IQR 2.3-10.2)和 48.3%(IQR 36.7-58.7)。第三代头孢菌素是最常用的抗生素。抗生素知识得分较低的医生更倾向于处方抗生素(p < 0.001)、联合抗生素(p = 0.001)和广谱抗生素(p < 0.001):结论:医生的抗生素知识不足与抗生素处方过量有很大关系。中国基层医疗机构急需开展针对医生抗生素知识的专业培训,以提高抗生素的合理使用。
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引用次数: 0
Antimicrobial Resistance in Diverse Escherichia coli Pathotypes from Nigeria. 尼日利亚多种大肠埃希菌病型的抗菌药耐药性。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-26 DOI: 10.3390/antibiotics13100922
Kenneth Nnamdi Anueyiagu, Chibuzor Gerald Agu, Uzal Umar, Bruno Silvester Lopes

Escherichia coli is a gram-negative commensal bacterium living in human and animal intestines. Its pathogenic strains lead to high morbidity and mortality, which can adversely affect people by causing urinary tract infections, food poisoning, septic shock, or meningitis. Humans can contract E. coli by eating contaminated food-such as raw or undercooked raw milk, meat products, and fresh produce sold in open markets-as well as by coming into contact with contaminated settings like wastewater, municipal water, soil, and faeces. Some pathogenic strains identified in Nigeria, include Enterohemorrhagic (Verotoxigenic), Enterotoxigenic, Enteropathogenic, Enteroinvasive, and Enteroaggregative E. coli. This causes acute watery or bloody diarrhoea, stomach cramps, and vomiting. Apart from the virulence profile of E. coli, antibiotic resistance mechanisms such as the presence of blaCTX-M found in humans, animals, and environmental isolates are of great importance and require surveillance and monitoring for emerging threats in resource-limited countries. This review is aimed at understanding the underlying mechanisms of evolution and antibiotic resistance in E. coli in Nigeria and highlights the use of improving One Health approaches to combat the problem of emerging infectious diseases.

大肠杆菌是一种生活在人类和动物肠道中的革兰氏阴性共生菌。其致病菌株会导致高发病率和高死亡率,可引起尿路感染、食物中毒、脓毒性休克或脑膜炎,对人类造成不利影响。人类可通过食用受污染的食物(如生的或未煮熟的生牛奶、肉制品和露天市场出售的新鲜农产品)以及接触受污染的环境(如废水、市政用水、土壤和粪便)感染大肠杆菌。在尼日利亚发现的一些致病菌株包括肠出血性(Verotoxigenic)、肠毒性、肠致病性、肠侵入性和肠聚集性大肠杆菌。这种大肠杆菌会导致急性水样或血样腹泻、胃痉挛和呕吐。除了大肠杆菌的毒力特征外,抗生素耐药机制(如在人类、动物和环境分离物中发现的 blaCTX-M)也非常重要,需要在资源有限的国家对新出现的威胁进行监测和监控。本综述旨在了解尼日利亚大肠杆菌的进化和抗生素耐药性的基本机制,并强调利用不断改进的 "一体健康 "方法来应对新出现的传染病问题。
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引用次数: 0
Prevalence and Molecular Epidemiology of Intestinal Colonization by Multidrug-Resistant Bacteria among Hematopoietic Stem-Cell Transplantation Recipients: A Bulgarian Single-Center Study. 造血干细胞移植受者肠道耐多药细菌定植的流行率和分子流行病学:保加利亚单中心研究》。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-26 DOI: 10.3390/antibiotics13100920
Denis Niyazi, Stoyan Vergiev, Rumyana Markovska, Temenuga Stoeva

Background/Objectives: Intestinal colonization by multidrug-resistant (MDR) bacteria is considered one of the main risk factors for invasive infections in the hematopoietic stem-cell transplant (HSCT) setting, associated with hard-to-eradicate microorganisms. The aim of this study was to assess the rate of intestinal colonization by MDR bacteria and their microbial spectrum in a group of post-HSCT patients to study the genetic determinants of beta-lactam and glycopeptide resistance in the recovered isolates, as well as to determine the epidemiological relation between them. Methods: The intestinal colonization status of 74 patients admitted to the transplantation center of University Hospital "St. Marina"-Varna in the period January 2019 to December 2021 was investigated. Stool samples/rectal swabs were screened for third-generation cephalosporin and/or carbapenem-resistant Gram-negative bacteria, methicillin-resistant Staphylococcus aureus (MRSA), vancomycin-resistant enterococci (VRE), and Stenotrophomonas maltophilia. Identification and antimicrobial susceptibility testing were performed by Phoenix (BD, Sparks, MD, USA) and MALDI Biotyper sirius (Bruker, Bremen, Germany). Molecular genetic methods (PCR, DNA sequencing) were used to study the mechanisms of beta-lactam and glycopeptide resistance in the collected isolates, as well as the epidemiological relationship between them. Results: A total of 28 patients (37.8%) were detected with intestinal colonization by MDR bacteria. Forty-eight non-duplicate MDR bacteria were isolated from their stool samples. Amongst them, the Gram-negative bacteria prevailed (68.8%), dominated by ESBL-producing Escherichia coli (30.3%), and followed by carbapenem-resistant Pseudomonas sp. (24.2%). The Gram-positive bacteria were represented exclusively by Enterococcus faecium (31.2%). The main beta-lactam resistance mechanisms were associated with CTX-M and VIM production. VanA was detected in all vancomycin-resistant enterococci. A clonal relationship was observed among Enterobacter cloacae complex and among E. faecium isolates. Conclusions: To the best of our knowledge, this is the first Bulgarian study that presents detailed information about the prevalence, resistance genetic determinants, and molecular epidemiology of MDR gut-colonizing bacteria in HSCT patients.

背景/目的:耐多药(MDR)细菌的肠道定植被认为是造血干细胞移植(HSCT)环境中侵袭性感染的主要风险因素之一,这与难以根除的微生物有关。本研究的目的是评估一组造血干细胞移植术后患者肠道中 MDR 细菌的定植率及其微生物谱,研究回收分离菌株中β-内酰胺类药物和糖肽类药物耐药性的遗传决定因素,并确定它们之间的流行病学关系。研究方法调查了 "圣玛丽娜"-瓦尔纳大学医院移植中心在 2019 年 1 月至 2021 年 12 月期间收治的 74 名患者的肠道定植情况。粪便样本/直肠拭子筛查了第三代头孢菌素和/或碳青霉烯类耐药革兰氏阴性菌、耐甲氧西林金黄色葡萄球菌(MRSA)、耐万古霉素肠球菌(VRE)和嗜麦芽血单胞菌。鉴定和抗菌药物敏感性测试由 Phoenix(BD,Sparks,MD,USA)和 MALDI Biotyper sirius(Bruker,Bremen,Germany)进行。分子遗传学方法(PCR、DNA 测序)用于研究收集到的分离菌株对β-内酰胺类和糖肽类药物产生耐药性的机制,以及它们之间的流行病学关系。研究结果共检测到 28 名患者(37.8%)肠道内有 MDR 细菌定植。从他们的粪便样本中分离出 48 个非重复的 MDR 细菌。其中,革兰氏阴性菌占多数(68.8%),主要是产 ESBL 的大肠埃希菌(30.3%),其次是耐碳青霉烯类的假单胞菌(24.2%)。革兰氏阳性菌中仅有粪肠球菌(31.2%)。主要的β-内酰胺耐药机制与 CTX-M 和 VIM 的产生有关。在所有耐万古霉素肠球菌中都检测到了 VanA。在泄殖腔肠杆菌复合体和粪肠杆菌分离物中发现了克隆关系。结论:据我们所知,这是保加利亚的第一项研究,详细介绍了造血干细胞移植患者肠道定植细菌耐 MDR 的流行率、耐药基因决定因素和分子流行病学。
{"title":"Prevalence and Molecular Epidemiology of Intestinal Colonization by Multidrug-Resistant Bacteria among Hematopoietic Stem-Cell Transplantation Recipients: A Bulgarian Single-Center Study.","authors":"Denis Niyazi, Stoyan Vergiev, Rumyana Markovska, Temenuga Stoeva","doi":"10.3390/antibiotics13100920","DOIUrl":"https://doi.org/10.3390/antibiotics13100920","url":null,"abstract":"<p><p><b>Background/Objectives</b>: Intestinal colonization by multidrug-resistant (MDR) bacteria is considered one of the main risk factors for invasive infections in the hematopoietic stem-cell transplant (HSCT) setting, associated with hard-to-eradicate microorganisms. The aim of this study was to assess the rate of intestinal colonization by MDR bacteria and their microbial spectrum in a group of post-HSCT patients to study the genetic determinants of beta-lactam and glycopeptide resistance in the recovered isolates, as well as to determine the epidemiological relation between them. <b>Methods</b>: The intestinal colonization status of 74 patients admitted to the transplantation center of University Hospital \"St. Marina\"-Varna in the period January 2019 to December 2021 was investigated. Stool samples/rectal swabs were screened for third-generation cephalosporin and/or carbapenem-resistant Gram-negative bacteria, methicillin-resistant <i>Staphylococcus aureus</i> (MRSA), vancomycin-resistant enterococci (VRE), and <i>Stenotrophomonas maltophilia</i>. Identification and antimicrobial susceptibility testing were performed by Phoenix (BD, Sparks, MD, USA) and MALDI Biotyper sirius (Bruker, Bremen, Germany). Molecular genetic methods (PCR, DNA sequencing) were used to study the mechanisms of beta-lactam and glycopeptide resistance in the collected isolates, as well as the epidemiological relationship between them. <b>Results</b>: A total of 28 patients (37.8%) were detected with intestinal colonization by MDR bacteria. Forty-eight non-duplicate MDR bacteria were isolated from their stool samples. Amongst them, the Gram-negative bacteria prevailed (68.8%), dominated by ESBL-producing <i>Escherichia coli</i> (30.3%), and followed by carbapenem-resistant <i>Pseudomonas</i> sp. (24.2%). The Gram-positive bacteria were represented exclusively by <i>Enterococcus faecium</i> (31.2%). The main beta-lactam resistance mechanisms were associated with CTX-M and VIM production. <i>VanA</i> was detected in all vancomycin-resistant enterococci. A clonal relationship was observed among <i>Enterobacter cloacae</i> complex and among <i>E. faecium</i> isolates. <b>Conclusions</b>: To the best of our knowledge, this is the first Bulgarian study that presents detailed information about the prevalence, resistance genetic determinants, and molecular epidemiology of MDR gut-colonizing bacteria in HSCT patients.</p>","PeriodicalId":54246,"journal":{"name":"Antibiotics-Basel","volume":"13 10","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11504062/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142512938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of the Efficacy of Intravenous Push and Intravenous Piggyback Ceftriaxone in Critically Ill Patients. 评估重症患者静脉推注和静脉捎带头孢曲松的疗效。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-26 DOI: 10.3390/antibiotics13100921
Elly R Sherman, Nha Hue Ta, Trisha N Branan, Natt Patimavirujh, Luren Ashton Dickinson, Christopher M Bland, Susan E Smith

Background/Objective: Intravenous fluid shortages have led to fluid-sparing measures such as intravenous push (IVP) administration of antibiotics. This study aimed to compare the safety and efficacy of IVP and intravenous piggyback (IVPB) ceftriaxone in critically ill patients. Results: Demographics were similar in IVP (n = 201) and IVPB (n = 200) groups. Sequential Organ Failure Assessment (SOFA) score was higher, and sepsis and septic shock were more common in the IVP group. Treatment failure occurred in 37.8% of IVP and 19.5% of IVPB groups (p < 0.001). Hospital mortality was more common with IVP (21.4% vs. 9.5%, p < 0.001). Hospital LOS was longer with IVP while intensive care unit (ICU) LOS was similar between the groups. IVP ceftriaxone (OR 2.33, 95% CI 1.43-3.79) and the SOFA score (OR 1.18, 95% CI 1.1-1.27) were associated with treatment failure. Methods: A single-center, retrospective cohort study included adults admitted to an ICU from 2016 to 2021 who received empiric ceftriaxone for ≥72 h. The primary outcome was treatment failure, defined as a composite of inpatient mortality or escalation of antibiotics. Secondary outcomes included length of stay (LOS) and mortality. Chi-squared and independent-sample t-tests were used. Treatment failure was evaluated using multivariate logistic regression. Conclusions: Compared to IVPB, IVP ceftriaxone was associated with higher treatment failure in critically ill patients. Both safety and efficacy should be considered before implementing novel antibiotic administration strategies in practice based primarily on convenience.

背景/目的:由于静脉输液短缺,人们采取了静脉推注(IVP)抗生素等节约输液的措施。本研究旨在比较重症患者静脉推注和静脉回输头孢曲松的安全性和有效性。研究结果IVP组(n = 201)和IVPB组(n = 200)的人口统计学特征相似。IVP组的序贯器官衰竭评估(SOFA)评分更高,脓毒症和脓毒性休克更常见。IVP组和IVPB组分别有37.8%和19.5%的患者出现治疗失败(P < 0.001)。IVP 组的住院死亡率更高(21.4% 对 9.5%,P < 0.001)。IVP组的住院时间更长,而两组重症监护室(ICU)的住院时间相似。静脉滴注头孢曲松(OR 2.33,95% CI 1.43-3.79)和 SOFA 评分(OR 1.18,95% CI 1.1-1.27)与治疗失败有关。研究方法一项单中心回顾性队列研究纳入了2016年至2021年期间入住ICU并接受经验性头孢曲松治疗≥72小时的成人。次要结果包括住院时间(LOS)和死亡率。采用卡方检验和独立样本 t 检验。采用多变量逻辑回归对治疗失败进行评估。得出结论:与 IVPB 相比,IVP 头孢曲松对重症患者的治疗失败率更高。在主要基于方便性的基础上实施新型抗生素给药策略之前,应同时考虑安全性和有效性。
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引用次数: 0
Beyond Antibiotics: What the Future Holds. 超越抗生素:未来会怎样?
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-25 DOI: 10.3390/antibiotics13100919
Payam Benyamini

The prevalence of multidrug resistance (MDR) and stagnant drug-development pipelines have led to the rapid rise of hard-to-treat antibiotic-resistant bacterial infections. These infectious diseases are no longer just nosocomial but are also becoming community-acquired. The spread of MDR has reached a crisis level that needs immediate attention. The landmark O'Neill report projects that by 2050, mortality rates associated with MDR bacterial infections will surpass mortality rates associated with individuals afflicted with cancer. Since conventional antimicrobials are no longer very reliable, it is of great importance to investigate different strategies to combat these life-threatening infectious diseases. Here, we provide an overview of recent advances in viable alternative treatment strategies mainly targeting a pathogen's virulence capability rather than viability. Topics include small molecule and immune inhibition of virulence factors, quorum sensing (QS) quenching, inhibition of biofilm development, bacteriophage-mediated therapy, and manipulation of an individual's macroflora to combat MDR bacterial infections.

多重耐药性(MDR)的普遍存在和药物开发渠道的停滞不前,导致难以治疗的抗生素耐药细菌感染迅速增加。这些传染病已不再是单纯的病原性传染病,也正在成为社区获得性传染病。MDR 的传播已达到危机程度,需要立即引起重视。具有里程碑意义的奥尼尔报告预计,到 2050 年,与 MDR 细菌感染相关的死亡率将超过与癌症患者相关的死亡率。由于传统的抗菌药物已不再十分可靠,研究不同的策略来应对这些威胁生命的传染病就显得尤为重要。在此,我们将概述可行的替代治疗策略的最新进展,这些策略主要针对病原体的毒力而非存活能力。主题包括小分子和免疫抑制毒力因子、法定量感应(QS)淬灭、抑制生物膜发展、噬菌体介导的疗法,以及操纵个体的大型菌群对抗 MDR 细菌感染。
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引用次数: 0
Phenotypic and Genotypic Profiles of Extended-Spectrum Beta-Lactamase-Producing Multidrug-Resistant Klebsiella pneumoniae in Northeastern Thailand. 泰国东北部产广谱β-乳酰胺酶耐多药肺炎克雷伯氏菌的表型和基因型概况。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2024-09-25 DOI: 10.3390/antibiotics13100917
Sumontha Chaisaeng, Nattamol Phetburom, Pachara Kasemsiri, Nuntiput Putthanachote, Naowarut Wangnadee, Parichart Boueroy, Anusak Kerdsin, Peechanika Chopjitt

The global emergence of extended-spectrum beta-lactamase (ESBL)-producing Klebsiella pneumoniae presents a significant public health threat and complicates antibiotic treatment for infections. This study aimed to determine the prevalence of ESBL-producing K. pneumoniae in a clinical setting, analyze their antimicrobial susceptibility profiles, and characterize both phenotypic and genetic determinants. A total of 507 non-duplicate clinical isolates of Enterobacterales were collected between 2019 and 2020, and third-generation cephalosporin resistance was screened by disk diffusion. Identification of K. pneumoniae was confirmed using biochemical tests and PCR with species-specific primers. Antimicrobial susceptibility testing was conducted using disk diffusion, and phenotypic ESBL production was confirmed using the combined disk method. Multiplex PCR detected ESBL genes (blaTEM, blaSHV, and blaCTX-M) and identified blaCTX-M groups. The genetic relatedness of ESBL-producing strains was assessed using the ERIC-PCR approach. Fitty-four isolates were confirmed as ESBL producers, all classified as multidrug-resistant (MDR). All ESBL-producing K. pneumoniae isolates exhibited resistance to ampicillin and cefotaxime, with high resistance rates for ciprofloxacin (98.2%), azithromycin (94.4%), piperacillin-tazobactam (88.9%), and trimethoprim (83.3%). Genotypic analysis revealed blaCTX-M was present in 94.4% of isolates, blaSHV in 87%, and blaTEM in 55.5%. The blaCTX-M-1 group was the most prevalent, accounting for 96.1% of isolates. Co-harboring of blaCTX-M, blaSHV, and blaTEM occurred in 42.6% of isolates, with co-carrying of blaCTX-M, and blaSHV was observed in 23/54 isolates. The ERIC-PCR analysis revealed 15 distinct types, indicating high genetic diversity. These findings highlight the urgent need for ongoing monitoring to control the spread of ESBL among K. pneumoniae and emphasize the importance of early detection and appropriate antibiotic selection for effectively treating infection caused by these pathogens.

全球范围内出现的产广谱β-内酰胺酶(ESBL)肺炎克雷伯氏菌对公共卫生构成了严重威胁,并使感染的抗生素治疗复杂化。本研究旨在确定产 ESBL 肺炎克雷伯菌在临床环境中的流行率,分析其抗菌药敏感性谱,以及表型和遗传决定因素的特征。在2019年至2020年期间,共收集了507株非重复的肠杆菌临床分离株,并通过盘扩散筛选了第三代头孢菌素耐药性。通过生化检验和使用物种特异性引物进行 PCR,确认了肺炎双球菌的身份。使用磁盘扩散法进行抗菌药敏感性检测,并使用组合磁盘法确认表型 ESBL 的产生。多重 PCR 检测了 ESBL 基因(blaTEM、blaSHV 和 blaCTX-M),并确定了 blaCTX-M 群体。采用ERIC-PCR方法评估了产ESBL菌株的遗传亲缘关系。14株分离菌株被确认为产ESBL菌株,全部被归类为多重耐药菌株(MDR)。所有产ESBL的肺炎克氏菌分离株都表现出对氨苄西林和头孢他啶的耐药性,对环丙沙星(98.2%)、阿奇霉素(94.4%)、哌拉西林-他唑巴坦(88.9%)和三甲双酮(83.3%)的耐药率较高。基因型分析表明,94.4%的分离株含有 blaCTX-M,87%含有 blaSHV,55.5%含有 blaTEM。blaCTX-M-1 组最为普遍,占分离株的 96.1%。42.6%的分离株同时携带 blaCTX-M、blaSHV 和 blaTEM,23/54 的分离株同时携带 blaCTX-M 和 blaSHV。ERIC-PCR 分析显示有 15 种不同的类型,表明遗传多样性很高。这些发现凸显了持续监测以控制 ESBL 在肺炎双球菌中传播的迫切需要,并强调了早期检测和适当选择抗生素以有效治疗这些病原体引起的感染的重要性。
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引用次数: 0
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Antibiotics-Basel
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