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Spectral tuning mediated by helix III in butterfly long wavelength-sensitive visual opsins revealed by heterologous action spectroscopy. 异源作用光谱研究蝴蝶长波长敏感视蛋白中螺旋III介导的光谱调谐。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-12-16 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0150-2
Tomoka Saito, Mitsumasa Koyanagi, Tomohiro Sugihara, Takashi Nagata, Kentaro Arikawa, Akihisa Terakita

Absorption spectra of opsin-based pigments are tuned from the UV to the red regions by interactions of the chromophore with surrounding amino acid residues. Both vertebrates and invertebrates possess long-wavelength-sensitive (LWS) opsins, which underlie color vision involving "red" sensing. The LWS opsins have independently evolved in each lineage, which suggests the existence of diverse mechanisms in spectral tuning. In vertebrate LWS opsins, the mechanisms underlying spectral tuning have been well characterized by spectroscopic analyses with recombinant pigments of wild type (WT) and mutant opsins. However in invertebrate LWS opsins including insect ones, the mechanisms are largely unknown due to the difficulty in obtaining recombinant pigments. Here we have overcome the problem by analyzing heterologous action spectra based on light-dependent changes in the second messenger in opsin-expressing cultured cells. We found that WTs of two LWS opsins of the butterfly, Papilio xuthus, PxRh3 and PxRh1 have the wavelengths of the absorption maxima at around 570 nm and 540 nm, respectively. Analysis of a series of chimeric mutants showed that helix III is crucial to generating a difference of about 15 nm in the wavelength of absorption maxima of these LWS opsins. Further site-directed mutations in helix III revealed that amino acid residues at position 116 and 120 (bovine rhodopsin numbering system) are involved in the spectral tuning of PxRh1 and PxRh3, suggesting a different spectral tuning mechanism from that of primate LWS opsins.

视蛋白基色素的吸收光谱通过发色团与周围氨基酸残基的相互作用从紫外区调谐到红光区。脊椎动物和无脊椎动物都具有长波长敏感(LWS)视蛋白,这是涉及“红色”感知的色觉的基础。LWS视蛋白在每个谱系中都独立进化,这表明光谱调谐存在不同的机制。在脊椎动物LWS视蛋白中,利用野生型(WT)和突变型视蛋白的重组色素进行光谱分析,很好地表征了光谱调谐的机制。然而,在包括昆虫在内的无脊椎动物的LWS视蛋白中,由于难以获得重组色素,其机制在很大程度上是未知的。在这里,我们克服了这个问题,通过分析异源作用光谱基于光依赖变化的第二信使在表达视蛋白的培养细胞。我们发现蝴蝶的两种LWS视蛋白PxRh3和PxRh1的最大吸收波长分别在570 nm和540 nm左右。对一系列嵌合突变体的分析表明,螺旋III对产生LWS视蛋白的最大吸收波长相差约15 nm至关重要。进一步的位点定向突变表明,PxRh1和PxRh3的光谱调节机制与116位和120位氨基酸残基(牛视紫红质编号系统)有关,这表明PxRh1和PxRh3的光谱调节机制与灵长类动物LWS视蛋白的不同。
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引用次数: 15
Recapitulation-like developmental transitions of chromatin accessibility in vertebrates 脊椎动物染色质可及性的再现样发育转变
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-11-14 DOI: 10.1186/s40851-019-0148-9
Masahiro Uesaka, S. Kuratani, H. Takeda, Naoki Irie
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引用次数: 20
Gene expression profiles of dicyemid life-cycle stages may explain how dispersing larvae locate new hosts 双叶蝇生命周期阶段的基因表达谱可以解释分散的幼虫如何找到新的寄主
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-11-13 DOI: 10.1186/s40851-019-0146-y
Tsai-Ming Lu, H. Furuya, N. Satoh
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引用次数: 0
Calcium ions in the aquatic environment drive planarians to food 水生环境中的钙离子驱使涡虫觅食
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-11-06 DOI: 10.1186/s40851-019-0147-x
M. Mori, Maria Narahashi, Tetsutaro Hayashi, Miyuki Ishida, Nobuyoshi Kumagai, Yuki Sato, R. Bagherzadeh, K. Agata, Takeshi Inoue
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引用次数: 11
Pattern of fin rays along the antero-posterior axis based on their connection to distal radials 基于鳍射线与桡骨远端连接的前后轴鳍射线模式
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-09-18 DOI: 10.1186/s40851-019-0145-z
Hiroki Hamada, Toshiaki Uemoto, Yoshitaka Tanaka, Yu Honda, Keiichi Kitajima, Tetsuya Umeda, A. Kawakami, M. Shinya, K. Kawakami, K. Tamura, Gembu Abe
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引用次数: 4
A 100-million-year old predator: a fossil neuropteran larva with unusually elongated mouthparts 一种一亿年前的捕食者:一种口器异常细长的神经化石幼虫
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-08-30 DOI: 10.1186/s40851-019-0144-0
J. Haug, P. Müller, C. Haug
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引用次数: 40
Life in a tube: morphology of the ctenostome bryozoan Hypophorella expansa. 试管中的生命:扩张隐孢子虫的形态。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-08-08 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0142-2
Philipp Pröts, Andreas Wanninger, Thomas Schwaha

Bryozoa is a large phylum of colonial aquatic suspension feeders. The boring ctenostome Hypophorella expansa is unique and inhabits parchment-like polychaete tubes. Morphological studies date back to the nineteenth century, but distinct adaptations to this specific habitat have not been properly analysed, which prompted us to reexamine the morphology of this recently encountered species. The colony of H. expansa is composed of elongated stolonal kenozooids with a distal capsule-like expansion. A median transversal muscle is present in the latter, and one autozooid is laterally attached to the capsule. Unique stolonal wrinkles are embedded in the thin parts of the stolons. Single autozooids are attached in an alternating right-left succession on subsequent stolons. Polypide morphology including digestive tract, muscular system and most parts of the nervous system are similar to other ctenostomes. The most obvious apomorphic features of Hypophorella are space balloons and the gnawing apparatus. The former are two fronto-lateral spherical structures on autozooids, which provide space inside the tube. The latter perforates layers of the polychaete tube wall and consists of two rows of cuticular teeth that, together with the entire vestibular wall, are introvertable during the protrusion-retraction process. The apertural muscles are in association with this gnawing apparatus heavily modified and show bilateral symmetry. Adaptations to the unique lifestyle of this species are thus evident in stolonal wrinkles, autozooidal space balloons and the gnawing apparatus. The growth pattern of the colony of H. expansa may aid in rapid colonization of the polychaete tube layers.

Bryozoa是一个大型的水生浮游动物门。无聊的扩张隐孢子虫是独特的,栖息在羊皮纸状的多毛管中。形态学研究可以追溯到19世纪,但对这种特定栖息地的不同适应尚未得到适当分析,这促使我们重新审视这种最近遇到的物种的形态学。扩张H.expansa的菌落由细长的匍匐茎类kenozooids组成,其远端具有囊状扩张。后者有一条正中横肌,一条自体动物学家横向附着在囊膜上。独特的匍匐茎褶皱嵌入匍匐茎的薄部分。单个自身动物学在随后的匍匐茎上以交替的左右顺序附着。多肽的形态包括消化道、肌肉系统和神经系统的大部分与其他ctenosomes相似。隐孢子虫最明显的变形特征是太空气球和啃咬器。前者是自动体上的两个正面到侧面的球形结构,在管内提供空间。后者穿透多毛管壁的各层,由两排角质牙齿组成,在突起回缩过程中,角质牙齿与整个前庭壁一起是内向的。开孔肌与这种经过严重改造的啃咬器相关,并显示出双侧对称性。因此,对该物种独特生活方式的适应在匍匐褶皱、自动体空间气球和啃咬器中表现得很明显。扩张H.expansa菌落的生长模式可能有助于多毛管层的快速定殖。
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引用次数: 14
Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus 脊索动物头部组织者基因goosecoid的顺式调控模块的进化:在Branchiostoma和Xenopus之间的比较
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-08-02 DOI: 10.1186/s40851-019-0143-1
Yuuri Yasuoka, Yukiko Tando, K. Kubokawa, M. Taira
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引用次数: 8
Primary processing neuropils associated with the malleoli of camel spiders (Arachnida, Solifugae): a re-evaluation of axonal pathways 与骆驼蜘蛛(蛛形纲,单足纲)踝部相关的初级加工神经粒:轴突通路的重新评估
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-08-02 DOI: 10.1186/s40851-019-0137-z
Andy Sombke, A. Klann, E. Lipke, H. Wolf
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引用次数: 12
Comparative genomic analysis suggests that the sperm-specific sodium/proton exchanger and soluble adenylyl cyclase are key regulators of CatSper among the Metazoa. 比较基因组分析表明,精子特异性钠/质子交换剂和可溶性腺苷酸环化酶是后生动物中CatSper的关键调节因子。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-07-26 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0141-3
Francisco Romero, Takuya Nishigaki

Background: CatSper is a sperm-specific calcium ion (Ca2+) channel, which regulates sperm flagellar beating by tuning cytoplasmic Ca2+ concentrations. Although this Ca2+ channel is essential for mammalian fertilization, recent bioinformatics analyses have revealed that genes encoding CatSper are heterogeneously distributed throughout the eukaryotes, including vertebrates. As this channel is activated by cytoplasmic alkalization in mammals and sea urchins, it has been proposed that the sperm-specific Na+/H+ exchanger (sNHE, a product of the SLC9C gene family) positively regulates its activity. In mouse, sNHE is functionally coupled to soluble adenylyl cyclase (sAC). CatSper, sNHE, and sAC have thus been considered functionally interconnected in the control of sperm motility, at least in mouse and sea urchin.

Results: We carried out a comparative genomic analysis to explore phylogenetic relationships among CatSper, sNHE and sAC in eukaryotes. We found that sNHE occurs only in Metazoa, although sAC occurs widely across eukaryotes. In animals, we found correlated and restricted distribution patterns of the three proteins, suggesting coevolution among them in the Metazoa. Namely, nearly all species in which CatSper is conserved also preserve sNHE and sAC. In contrast, in species without sAC, neither CatSper nor sNHE is conserved. On the other hand, the distribution of another testis-specific NHE (NHA, a product of the SLC9B gene family) does not show any apparent association with that of CatSper.

Conclusions: Our results suggest that CatSper, sNHE and sAC form prototypical machinery that functions in regulating sperm flagellar beating in Metazoa. In non-metazoan species, CatSper may be regulated by other H+ transporters, or its activity might be independent of cytoplasmic pH.

背景:CatSper是一种精子特异性钙离子(Ca2+)通道,通过调节细胞质Ca2+浓度来调节精子鞭毛的跳动。尽管这种Ca2+通道对哺乳动物受精至关重要,但最近的生物信息学分析表明,编码CatSper的基因在包括脊椎动物在内的真核生物中分布不均匀。由于该通道在哺乳动物和海胆中被细胞质碱化激活,因此有人提出精子特异性Na+/H+交换器(sNHE,SLC9C基因家族的产物)正向调节其活性。在小鼠中,sNHE在功能上与可溶性腺苷酸环化酶(sAC)偶联。因此,CatSper、sNHE和sAC在控制精子运动方面被认为是功能上相互关联的,至少在小鼠和海胆中是这样。结果:我们进行了比较基因组分析,以探索CatSper、sNHE和sAC在真核生物中的系统发育关系。我们发现sNHE只发生在后生动物中,尽管sAC广泛存在于真核生物中。在动物身上,我们发现了这三种蛋白质的相关和有限分布模式,这表明它们在后生动物中是共同进化的。也就是说,几乎所有CatSper被保护的物种都保存了sNHE和sAC。相反,在没有sAC的物种中,CatSper和sNHE都不保守。另一方面,另一种睾丸特异性NHE(NHA,SLC9B基因家族的产物)的分布与CatSper的分布没有任何明显的相关性。在非后生动物物种中,CatSper可能受到其他H+转运蛋白的调节,或者其活性可能与细胞质pH无关。
{"title":"Comparative genomic analysis suggests that the sperm-specific sodium/proton exchanger and soluble adenylyl cyclase are key regulators of CatSper among the Metazoa.","authors":"Francisco Romero,&nbsp;Takuya Nishigaki","doi":"10.1186/s40851-019-0141-3","DOIUrl":"https://doi.org/10.1186/s40851-019-0141-3","url":null,"abstract":"<p><strong>Background: </strong>CatSper is a sperm-specific calcium ion (Ca<sup>2+</sup>) channel, which regulates sperm flagellar beating by tuning cytoplasmic Ca<sup>2+</sup> concentrations. Although this Ca<sup>2+</sup> channel is essential for mammalian fertilization, recent bioinformatics analyses have revealed that genes encoding CatSper are heterogeneously distributed throughout the eukaryotes, including vertebrates. As this channel is activated by cytoplasmic alkalization in mammals and sea urchins, it has been proposed that the sperm-specific Na<sup>+</sup>/H<sup>+</sup> exchanger (sNHE, a product of the <i>SLC9C</i> gene family) positively regulates its activity. In mouse, sNHE is functionally coupled to soluble adenylyl cyclase (sAC). CatSper, sNHE, and sAC have thus been considered functionally interconnected in the control of sperm motility, at least in mouse and sea urchin.</p><p><strong>Results: </strong>We carried out a comparative genomic analysis to explore phylogenetic relationships among CatSper, sNHE and sAC in eukaryotes. We found that sNHE occurs only in Metazoa, although sAC occurs widely across eukaryotes. In animals, we found correlated and restricted distribution patterns of the three proteins, suggesting coevolution among them in the Metazoa. Namely, nearly all species in which CatSper is conserved also preserve sNHE and sAC. In contrast, in species without sAC, neither CatSper nor sNHE is conserved. On the other hand, the distribution of another testis-specific NHE (NHA, a product of the <i>SLC9B</i> gene family) does not show any apparent association with that of CatSper.</p><p><strong>Conclusions: </strong>Our results suggest that CatSper, sNHE and sAC form prototypical machinery that functions in regulating sperm flagellar beating in Metazoa. In non-metazoan species, CatSper may be regulated by other H<sup>+</sup> transporters, or its activity might be independent of cytoplasmic pH.</p>","PeriodicalId":54280,"journal":{"name":"Zoological Letters","volume":"5 ","pages":"25"},"PeriodicalIF":2.7,"publicationDate":"2019-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40851-019-0141-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41220139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
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Zoological Letters
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