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Multiple functions of non-hypophysiotropic gonadotropin releasing hormone neurons in vertebrates 脊椎动物非垂体促性腺激素释放激素神经元的多种功能
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-07-22 DOI: 10.1186/s40851-019-0138-y
Chie Umatani, Y. Oka
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引用次数: 21
Correction to: An efficient system for homology-dependent targeted gene integration in medaka (Oryzias latipes) medaka (Oryzias latipes)同源依赖性靶向基因整合的高效系统
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-07-08 DOI: 10.1186/s40851-019-0139-x
Yu Murakami, Satoshi Ansai, Akari Yonemura, M. Kinoshita
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引用次数: 0
Regeneration of the digestive tract of an anterior-eviscerating sea cucumber, Eupentacta quinquesemita, and the involvement of mesenchymal-epithelial transition in digestive tube formation. 前切海参(Eupentacta quinquesemita)消化道的再生和消化道形成过程中间充质-上皮转化的参与。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-06-21 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0133-3
Akari Okada, Mariko Kondo

Sea cucumbers (a class of echinoderms) exhibit a high capacity for regeneration, such that, following ejection of inner organs in a process called evisceration, the lost organs regenerate. There are two ways by which evisceration occurs in sea cucmber species: from the mouth (anterior) or the anus (posterior). Intriguingly, regenerating tissues are formed at both the anterior and posterior regions and extend toward the opposite ends, and merge to form a complete digestive tract. From the posterior side, the digestive tube regenerates extending a continuous tube from the cloaca, which remains at evisceration. In posteriorly-eviscerating species, the esophagus remains in the body, and a new tube regenerates continuously from it. However, in anterior-eviscerating species, no tubular tissue remains in the anterior region, raising the question of how the new digestive tube forms in the anterior regenerate. We addressed this question by detailed histological observations of the regenerating anterior digestive tract in a small sea cucumber, Eupentacta quinquesemita ("ishiko" in Japanese) after induced-evisceration. We found that an initial rudiment consisting of mesenchymal cells is formed along the edge of the anterior mesentery from the anterior end, and then, among the mesenchymal cells, multiple clusters of epithelial-like cells appears simultaneously and repeatedly in the extending region by mesenchymal-epithelial transition (MET) as visulalized using toluidine blue staining. Subsequently, multiple cavities were formed surrounded with these epithelial cells, and appeared to coalesce with each other to form into multiple lumens, and to eventually become a single tube. This anterior tube then fused to the tube regenerated from the posterior rudiment. Thus, we elucidated the process of regeneration of the anterior portion of the gut in an anteriorly eviscerating species, and suggest the involvement of MET and fusion of cavities/lumens in regeneration of the digestive tube.

海参(棘皮动物的一种)表现出很高的再生能力,例如,在一个被称为内脏的过程中,内脏被排出,失去的器官会再生。海参的内脏有两种方式:从嘴(前)或肛门(后)取出。有趣的是,再生组织在前后两个区域形成,并向相反的两端延伸,并合并形成一个完整的消化道。从后侧开始,消化管再生,从泄殖腔延伸出一个连续的管,保留在内脏处。在后开膛的种类中,食道仍留在体内,并不断地从食道中再生出新的食道。然而,在前内脏物种中,没有管状组织留在前区,提出了新的消化管是如何在前再生中形成的问题。我们通过对小海参Eupentacta quinquesemita(日语“ishiko”)诱导摘除后再生前消化道的详细组织学观察来解决这个问题。我们发现,由间充质细胞组成的最初雏形从前端沿着前肠系膜边缘形成,然后,在间充质细胞中,通过间充质-上皮转化(MET)在延伸区域同时反复出现多个上皮样细胞簇,如甲苯胺蓝染色所示。随后,在这些上皮细胞的包围下形成多个空腔,并相互融合形成多个管腔,最终成为一个单管。这个前管随后与从后雏形再生的管融合。因此,我们阐明了前开膛动物肠道前部的再生过程,并提出MET和腔/管腔融合参与了消化管的再生。
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引用次数: 12
A new calmanostracan crustacean species from the Cretaceous Yixian Formation and a simple approach for differentiating fossil tadpole shrimps and their relatives. 白垩纪义县组的一种新的calmanotracan甲壳类动物,以及区分蝌蚪虾及其亲属化石的简单方法。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-06-18 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0136-0
Philipp Wagner, Joachim T Haug, Carolin Haug

Background: Calmanostraca is a group of branchiopod eucrustaceans, with Triops cancriformis and Lepidurus apus as most prominent representatives. Both are regularly addressed with the inaccurate tag "living fossil", suggesting that the morphology has remained stable for several millions of years. Yet, T. cancriformis and L. apus represent only a fraction of the morphological diversity occurring in Calmanostraca, comprising the two groups Notostraca and Kazacharthra. Notostracans, commonly called tadpole shrimps, comprise the two groups Lepidurus and Triops with their elongated and rather narrow (in dorsal view) head shields. Kazacharthrans are exclusively fossil calmanostracans with broad and rather short shields, known from the Jurassic and Triassic period. One formation where fossil calmanostracans have been found is the Yixian Formation of northeastern China (Lower Cretaceous, 125-121 million years). It is part of the Jehol Group, an ecosystem known for its exceptionally well-preserved fossils, including vertebrates and plants, but also diverse arthropods. Two calmanostracan species have to date been described from the Yixian Formation, Jeholops hongi and Chenops yixianensis.

Results: We describe here a new calmanostracan crustacean from the Yixian Formation, Notostraca oleseni, and additionally a simple tool using a morphospace analysis to delineate different species. Measurements characterising the shield and trunk proportions of different calmanostracan species were performed, data were size-corrected, and used for this morphospace analysis to compare the different morphologies. As sclerotised body parts are more likely to be preserved in fossils than soft tissue, shields and parts of the trunk are in many cases the only morphological structures available for study. Therefore, the present analysis represents a simple tool for distinguishing between different species, as well as allowing the inclusion of specimens that are only preserved fragmentarily. Additionally, it provides a tool to demarcate the kazacharthran-like specimen described, but not formally named, by Wagner et al. (Paleontol Res. 22:57-63, 2018). Hence, we amended the description and name the species Calmanostraca hassbergella.

Conclusion: Our results indicate a large diversity in shield and trunk morphology in calmanostracans, in contrast to their often claimed highly conserved and uniform morphology. Especially extinct forms such as Notostraca oleseni add up to this result and point to the species richness and morphological diversity within Calmanostraca.

背景:Calmanostraca是一类鳃足类真壳纲动物,其中以Canciformis三脚目和Lepidurus apus为最突出的代表。两者都经常被贴上不准确的标签“活化石”,这表明其形态已经稳定了数百万年。然而,T.canciformis和L.apus只代表了Calmanostraca中形态多样性的一小部分,包括Notostraca和Kazacharthra两个群体。无介形虫,通常被称为蝌蚪虾,由Lepidurus和Triops两组组成,它们的头盾细长而狭窄(从背面看)。Kazacharthrans是一种独特的钙镁化石,具有宽而短的盾牌,已知于侏罗纪和三叠纪。中国东北地区的义县组(下白垩纪,1.25亿-12.1亿年)是发现钙蛋白酶化石的一个地层。它是热河群的一部分,热河群是一个以其保存异常完好的化石而闻名的生态系统,包括脊椎动物和植物,还有各种节肢动物。到目前为止,已经描述了义县组的两种钙粘藻,热河扇贝和义县Chenops。结果:我们在这里描述了一种来自义县组的新的calmanotracan甲壳类动物,Notostraca oleseni,以及一种使用形态空间分析来描述不同物种的简单工具。进行了表征不同calmanotracan物种的盾状体和树干比例的测量,对数据进行了尺寸校正,并用于该形态空间分析,以比较不同的形态。由于硬化的身体部位比软组织更有可能保存在化石中,因此在许多情况下,盾牌和躯干部位是唯一可供研究的形态结构。因此,目前的分析代表了一种简单的工具,可以区分不同的物种,并允许包含仅部分保存的标本。此外,它还提供了一种工具来标定Wagner等人描述但未正式命名的类似kazacharthran的标本(Paleontol Res.22:57-632018)。因此,我们修改了描述,并将该物种命名为Calmanostraca hassbergella。结论:我们的研究结果表明,与通常声称的高度保守和均匀的形态相比,钙粘藻的盾状体和主干形态有很大的多样性。特别是已经灭绝的形态,如Notostraca oleseni,加起来就是这一结果,并指出了Calmanostraca内的物种丰富度和形态多样性。
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引用次数: 3
FGF- and SHH-based molecular signals regulate barbel and craniofacial development in catfish. 基于FGF和shh的分子信号调节鲶鱼的倒刺和颅面发育。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-06-14 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0135-1
Tatsuya Itoyama, Makiko Fukui, Masahumi Kawaguchi, Saki Kaneko, Fumiaki Sugahara, Yasunori Murakami

Background: Catfish (Siluriformes) are characterized by unique morphologies, including enlarged jaws with movable barbels and taste buds covering the entire body surface. Evolution of these characteristics was a crucial step in their adaptive radiation to freshwater environments. However, the developmental processes of the catfish craniofacial region and taste buds remain to be elucidated; moreover, little is known about the molecular mechanisms underlying the morphogenesis of these structures.

Results: In Amur catfish (Silurus asotus), three pairs of barbel primordia are formed by 2 days post-fertilization (dpf). Innervation of the peripheral nerves and formation of muscle precursors are also established during early development. Taste buds from the oral region to the body trunk are formed by 4 dpf. We then isolated catfish cognates Shh (SaShh) and Fgf8 (SaFgf8), which are expressed in maxillary barbel primordium at 1-2 dpf. Further, SHH signal inhibition induces reduction of mandibular barbels with abnormal morphology of skeletal elements, whereas it causes no apparent abnormality in the trigeminal and facial nerve morphology. We also found that mandibular barbel lengths and number of taste buds are reduced by FGF inhibition, as seen in SHH signal inhibition. However, unlike with SHH inhibition, the abnormal morphology of the trigeminal and facial nerves was observed in FGF signal-inhibited embryos.

Conclusion: The developmental processes of Amur catfish are consistent with those reported for other catfish species. Thus, developmental aspects of craniofacial structures and taste buds may be conserved in Siluriformes. Our findings also suggest that SHH signaling plays a crucial role in the formation of barbels and taste buds, without affecting nerve projection, while FGF signaling is required for the development of barbels, taste buds, and branchial nerves. Thus, SHH and FGF signaling plays key roles in the ontogenesis and evolution of some catfish-specific characteristics.

背景:鲶鱼(Siluriformes)具有独特的形态特征,包括扩大的下颌和可移动的刺和覆盖整个身体表面的味蕾。这些特征的进化是它们适应淡水环境的关键一步。然而,鲶鱼颅面区和味蕾的发育过程仍有待阐明;此外,对这些结构形态发生的分子机制知之甚少。结果:鲶鱼(Silurus asotus)在受精后2天形成3对须原基。周围神经的支配和肌肉前体的形成也在发育早期建立。从口腔到躯干的味蕾由4个dpf组成。然后,我们分离了鲶鱼的同源基因Shh (SaShh)和Fgf8 (SaFgf8),这两个基因在上颌须原基1-2 dpf处表达。此外,SHH信号抑制导致下颌倒刺减少,骨骼元素形态异常,而三叉神经和面神经形态没有明显异常。我们还发现,FGF抑制会减少下颌须的长度和味蕾的数量,这在SHH信号抑制中可见。然而,与SHH抑制不同,在FGF信号抑制的胚胎中观察到三叉神经和面神经的异常形态。结论:黑龙江鲶鱼的发育过程与其他种类鲶鱼的发育过程一致。因此,颅面结构和味蕾的发育方面可能在志留形动物中得到保留。我们的研究结果还表明,SHH信号在倒刺和味蕾的形成中起着至关重要的作用,而不影响神经投射,而FGF信号对于倒刺、味蕾和鳃神经的发育是必需的。因此,SHH和FGF信号在一些鲶鱼特异性特征的个体发生和进化中起着关键作用。
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引用次数: 2
First report of paired ventral endites in a hurdiid radiodont. 首次报告飓齿龙的成对腹内齿。
IF 1.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-06-11 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0132-4
Stephen Pates, Allison C Daley, Nicholas J Butterfield

Background: Radiodonta, large Palaeozoic nektonic predators, occupy a pivotal evolutionary position as stem-euarthropods and filled important ecological niches in early animal ecosystems. Analyses of the anatomy and phylogenetic affinity of these large nektonic animals have revealed the origins of the euarthropod compound eye and biramous limb, and interpretations of their diverse feeding styles have placed various radiodont taxa as primary consumers and apex predators. Critical to our understanding of both radiodont evolution and ecology are the paired frontal appendages; however, the vast differences in frontal appendage morphology between and within different radiodont families have made it difficult to identify the relative timings of character acquisitions for this body part.

Results: Here we describe a new genus of hurdiid, Ursulinacaris, from the middle Cambrian (Miaolingian, Wuliuan) Mount Cap Formation (Northwest Territories, Canada) and Jangle Limestone (Nevada, USA). Ursulinacaris has the same organisation as other hurdiid frontal appendages, with elongate endites on the first five podomeres in the distal articulated region and auxiliary spines on the distal margin of endites only. Unlike all other hurdiid genera, which possess a single row of elongated and blade-like ventral endites, this taxon uniquely bears paired slender endites.

Conclusion: The blade-like endite morphology is shown to be a hurdiid autapomorphy. Two other frontal appendage characters known only in hurdiids, namely auxiliary spines on the distal margin of endites only, and elongate endites on the first five podomeres in the distal articulated region only, predate this innovation.

背景雷齿兽是古生代的大型裸眼食肉动物,作为茎突类动物在进化过程中占据了关键的地位,并在早期动物生态系统中占据了重要的生态位。对这些大型浮游动物的解剖学和系统发育亲缘关系的分析揭示了凹足类复眼和双肢的起源,而对其不同摄食方式的解释则将不同的放射虫类群定位为初级消费者和顶级掠食者。成对的额附肢对我们了解桡足类的进化和生态学至关重要;然而,不同桡足类家族之间以及家族内部额附肢形态的巨大差异使得我们很难确定该身体部位特征获得的相对时间:在这里,我们描述了中寒武统(妙林统、五柳庵统)帽山地层(加拿大西北地区)和章乐石灰岩(美国内华达州)中的一个新的飓风蜥属--Ursulinacaris。Ursulinacaris 的组织结构与其他飓风鱼类的额附肢相同,在远端衔接区的前五个荚膜上有细长的内齿,仅在内齿的远端边缘有辅助刺。与所有其他拥有单排拉长和刀片状腹面内齿的飓风鱼属不同,该分类群独特地具有成对的细长内齿:结论:叶片状的内齿形态是飓风鱼类的自同形现象。仅在飓风鱼类中已知的另外两个前额附肢特征,即仅在内齿远端边缘上的辅助刺,以及仅在远端衔接区域的前五个荚膜上的拉长内齿,均早于这一创新。
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引用次数: 0
Digital dissection of the head of the rock dove (Columba livia) using contrast-enhanced computed tomography. 使用增强对比的计算机断层扫描对岩鸽(Columba livia)头部进行数字解剖。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-06-10 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0129-z
Marc E H Jones, David J Button, Paul M Barrett, Laura B Porro

The rock dove (or common pigeon), Columba livia, is an important model organism in biological studies, including research focusing on head muscle anatomy, feeding kinematics, and cranial kinesis. However, no integrated computer-based biomechanical model of the pigeon head has yet been attempted. As an initial step towards achieving this goal, we present the first three-dimensional digital dissection of the pigeon head based on a contrast-enhanced computed tomographic dataset achieved using iodine potassium iodide as a staining agent. Our datasets enable us to visualize the skeletal and muscular anatomy, brain and cranial nerves, and major sense organs of the pigeon, including very small and fragile features, as well as maintaining the three-dimensional topology of anatomical structures. This work updates and supplements earlier anatomical work on this widely used laboratory organism. We resolve several key points of disagreement arising from previous descriptions of pigeon anatomy, including the precise arrangement of the external adductor muscles and their relationship to the posterior adductor. Examination of the eye muscles highlights differences between avian taxa and shows that pigeon eye muscles are more similar to those of a tinamou than they are to those of a house sparrow. Furthermore, we present our three-dimensional data as publicly accessible files for further research and education purposes. Digital dissection permits exceptional visualisation and will be a valuable resource for further investigations into the head anatomy of other bird species, as well as efforts to reconstruct soft tissues in fossil archosaurs.

岩鸽(或普通鸽子)是生物学研究中重要的模式生物,包括头部肌肉解剖学、摄食运动学和颅运动学的研究。然而,目前还没有基于计算机的鸽子头生物力学模型。作为实现这一目标的第一步,我们提出了基于对比度增强计算机断层扫描数据集的第一个三维数字解剖鸽子头,使用碘化钾作为染色剂。我们的数据集使我们能够可视化鸽子的骨骼和肌肉解剖结构,大脑和脑神经以及主要感觉器官,包括非常小和脆弱的特征,以及维持解剖结构的三维拓扑结构。这项工作更新和补充了早期对这种广泛使用的实验室生物的解剖工作。我们解决了先前鸽子解剖描述中出现的几个关键点的分歧,包括外内收肌的精确排列及其与后内收肌的关系。对眼肌的检查突出了鸟类分类群之间的差异,并表明鸽子的眼肌更类似于雀鸟的眼肌,而不是家麻雀的眼肌。此外,我们将我们的三维数据作为公开访问的文件,以供进一步的研究和教育目的。数字解剖允许特殊的可视化,将是进一步研究其他鸟类头部解剖的宝贵资源,以及重建化石始祖的软组织。
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引用次数: 21
Morphogenesis and development of midgut symbiotic organ of the stinkbug Plautia stali (Hemiptera: Pentatomidae). 臭虫中肠共生器官的形态发生与发育(半翅目:蝽科)。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-05-31 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0134-2
Sayumi Oishi, Minoru Moriyama, Ryuichi Koga, Takema Fukatsu

Diverse insects are intimately associated with microbial symbionts, which play a variety of biological roles in their adaptation to and survival in the natural environment. Such insects often possess specialized organs for hosting the microbial symbionts. What developmental processes and mechanisms underlie the formation of the host organs for microbial symbiosis is of fundamental biological interest but poorly understood. Here we investigate the morphogenesis of the midgut symbiotic organ and the process of symbiont colonization therein during the developmental course of the stinkbug Plautia stali. Upon hatching, the midgut is a simple and smooth tube. Subsequently, symbiont colonization to the posterior midgut occurs, and thickening and folding of the midgut epithelium proceed during the first instar period. By the second instar, rudimentary crypts have formed, and their inner cavities are colonized by the symbiotic bacteria. From the second instar to the fourth instar, while the alimentary tract grows and the posterior midgut is established as the symbiotic organ with numerous crypts, the anterior midgut and the posterior midgut are structurally and functionally isolated by a strong constriction in the middle. By the early fifth instar, the midgut symbiotic organ attains the maximal length, but toward the mid fifth instar, the basal region of each crypt starts to constrict and narrow, which deforms the midgut symbiotic organ as a whole into a shorter, thicker and twisted shape. By the late fifth instar to adulthood, the crypts are constricted off, by which the symbiotic bacteria are confined in the crypt cavities and isolated from the midgut main tract, and concurrently, the strong midgut constriction in the middle becomes loose and open, by which the food flow from the anterior midgut to the posterior midgut recovers. This study provides the most detailed and comprehensive descriptions ever reported on the morphogenesis of the symbiotic organ and the process of symbiont colonization in an obligatory insect-bacterium gut symbiotic system. Considering that P. stali is recently emerging as a useful model system for experimentally studying the intimate insect-microbe gut symbiosis, the knowledge obtained in this study establishes the foundation for the further development of this research field.

微生物共生体与多种昆虫密切相关,在昆虫适应自然环境和在自然环境中生存中发挥着多种生物学作用。这类昆虫通常具有专门的器官来容纳微生物共生体。微生物共生寄主器官形成的发育过程和机制是一个基本的生物学问题,但人们对其了解甚少。本文研究了臭虫发育过程中中肠共生器官的形态发生及共生体在其中的定植过程。在孵化时,中肠是一个简单而光滑的管道。随后,共生体定殖到后中肠,中肠上皮的增厚和折叠在第一龄期间进行。到二龄时,基本的隐窝已经形成,它们的内腔被共生细菌定植。从二龄到四龄,随着消化道的发育,后中肠成为具有大量隐窝的共生器官,前中肠和后中肠在结构和功能上被中间的强烈收缩所隔离。到5龄早期,中肠共生器官的长度达到最大值,但到5龄中期,各隐窝基部开始收缩变窄,使中肠共生器官整体变短、变厚、扭曲。到5龄晚期至成虫期,隐窝收缩,共生细菌被限制在隐窝腔内,与中肠主束分离,同时,中间较强的中肠收缩变得松弛和开放,食物从前中肠向后中肠流动恢复。本研究提供了迄今为止报道的最详细和全面的关于昆虫-细菌肠道共生系统中共生器官的形态发生和共生定植过程的描述。考虑到斯塔利假单胞菌是最近出现的一种有用的实验研究昆虫-微生物肠道共生的模型系统,本研究获得的知识为该研究领域的进一步发展奠定了基础。
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引用次数: 38
Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea). 鳃足纲(甲壳纲)线粒体基因组多样性及其进化。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-05-27 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0131-5
Andrea Luchetti, Giobbe Forni, Alyza M Skaist, Sarah J Wheelan, Barbara Mantovani

Background: The crustacean class Branchiopoda includes fairy shrimps, clam shrimps, tadpole shrimps, and water fleas. Branchiopods, which are well known for their great variety of reproductive strategies, date back to the Cambrian and extant taxa can be mainly found in freshwater habitats, also including ephemeral ponds. Mitochondrial genomes of the notostracan taxa Lepidurus apus lubbocki (Italy), L. arcticus (Iceland) and Triops cancriformis (an Italian and a Spanish population) are here characterized for the first time and analyzed together with available branchiopod mitogenomes.

Results: Overall, branchiopod mitogenomes share the basic structure congruent with the ancestral Pancrustacea model. On the other hand, rearrangements involving tRNAs and the control region are observed among analyzed taxa. Remarkably, an unassigned region in the L. apus lubbocki mitogenome showed a chimeric structure, likely resulting from a non-homologous recombination event between the two flanking trnC and trnY genes. Notably, Anostraca and Onychocaudata mitogenomes showed increased GC content compared to both Notostraca and the common ancestor, and a significantly higher substitution rate, which does not correlate with selective pressures, as suggested by dN/dS values.

Conclusions: Branchiopod mitogenomes appear rather well-conserved, although gene rearrangements have occurred. For the first time, it is reported a putative non-homologous recombination event involving a mitogenome, which produced a pseudogenic tRNA sequence. In addition, in line with data in the literature, we explain the higher substitution rate of Anostraca and Onychocaudata with the inferred GC substitution bias that occurred during their evolution.

背景:鳃足纲甲壳动物包括神仙虾、蛤蜊虾、蝌蚪虾和水蚤。分支足类以其多样的繁殖策略而闻名,可以追溯到寒武纪,现存的分类群主要分布在淡水栖息地,也包括短暂的池塘。首次对脊索动物分类群Lepidurus apus lubbocki(意大利)、L.arcticus(冰岛)和Triops canciformis(意大利和西班牙种群)的线粒体基因组进行了表征,并与现有的鳃足类线粒体基因组一起进行了分析。结果:总的来说,鳃足有丝分裂基因组具有与祖先Pancrustacea模型一致的基本结构。另一方面,在分析的分类群中观察到涉及tRNA和控制区的重排。值得注意的是,L.apus lubbocki有丝分裂基因组中的一个未分配区域显示出嵌合结构,这可能是由两个侧翼trnC和trnY基因之间的非同源重组事件引起的。值得注意的是,与介形目和共同祖先相比,Anostraca和Onychocaudata的有丝分裂基因组显示出GC含量增加,并且具有显著更高的取代率,这与选择压力无关,如dN/dS值所示。结论:尽管发生了基因重排,但鳃足有丝分裂基因组看起来相当保守。首次报道了一个涉及有丝分裂基因组的假定非同源重组事件,该事件产生了假基因tRNA序列。此外,根据文献中的数据,我们解释了Anostraca和Onychocaudata较高的取代率,以及它们进化过程中发生的GC取代偏差。
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引用次数: 15
X-ray imaging of a water bear offers a new look at tardigrade internal anatomy. 水熊的x射线成像为缓步动物的内部解剖提供了新的视角。
IF 2.7 3区 生物学 Q2 ZOOLOGY Pub Date : 2019-05-11 eCollection Date: 2019-01-01 DOI: 10.1186/s40851-019-0130-6
Vladimir Gross, Mark Müller, Lorenz Hehn, Simone Ferstl, Sebastian Allner, Martin Dierolf, Klaus Achterhold, Georg Mayer, Franz Pfeiffer

Background: Tardigrades (water bears) are microscopic invertebrates of which the anatomy has been well studied using traditional techniques, but a comprehensive three-dimensional reconstruction has never been performed. In order to close this gap, we employed X-ray computed tomography (CT), a technique that is becoming increasingly popular in zoology for producing high-resolution, three-dimensional (3D) scans of whole specimens. While CT has long been used to scan larger samples, its use in some microscopic animals can be problematic, as they are often too small for conventional CT yet too large for high-resolution, optics-based soft X-ray microscopy. This size gap continues to be narrowed with advancements in technology, with high-resolution imaging now being possible using both large synchrotron devices and, more recently, laboratory-based instruments.

Results: Here we use a recently developed prototype lab-based nano-computed tomography device to image a 152 μm-long tardigrade at high resolution (200-270 nm pixel size). The resulting dataset allowed us to visualize the anatomy of the tardigrade in 3D and analyze the spatial relationships of the internal structures. Segmentation of the major structures of the body enabled the direct measurement of their respective volumes. Furthermore, we segmented every storage cell individually and quantified their volume distribution. We compare our measurements to those from published studies in which other techniques were used.

Conclusions: The data presented herein demonstrate the utility of CT imaging as a powerful supplementary tool for studies of tardigrade anatomy, especially for quantitative volume measurements. This nanoCT study represents the smallest complete animal ever imaged using CT, and offers new 3D insights into the spatial relationships of the internal organs of water bears.

背景:缓步动物(水熊)是一种微观无脊椎动物,其解剖结构已经用传统技术进行了很好的研究,但从未进行过全面的三维重建。为了缩小这一差距,我们采用了x射线计算机断层扫描(CT),这项技术在动物学中越来越流行,可以对整个标本进行高分辨率的三维(3D)扫描。虽然CT长期以来一直用于扫描较大的样本,但它在一些微观动物中的应用可能存在问题,因为它们对于传统CT来说太小,而对于基于光学的高分辨率软x射线显微镜来说又太大。随着技术的进步,这种尺寸差距继续缩小,现在可以使用大型同步加速器设备和最近的实验室仪器进行高分辨率成像。结果:本研究使用最新开发的实验室纳米计算机断层扫描设备对152 μm长的水熊虫进行了高分辨率成像(200-270 nm像素尺寸)。由此产生的数据集使我们能够以3D方式可视化水熊虫的解剖结构,并分析其内部结构的空间关系。人体主要结构的分割使其各自体积的直接测量成为可能。此外,我们将每个存储单元单独分割并量化其体积分布。我们将我们的测量结果与已发表的使用其他技术的研究结果进行比较。结论:本文的数据表明,CT成像是缓步动物解剖学研究的有力补充工具,特别是在定量体积测量方面。这项纳米oct研究代表了迄今为止使用CT成像的最小的完整动物,并为水熊内部器官的空间关系提供了新的3D见解。
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引用次数: 16
期刊
Zoological Letters
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