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Form and Information in Biology—An Evolutionary Perspective 生物学中的形式与信息--进化的视角
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-09-20 DOI: 10.1007/s10699-024-09964-x
Engin Bermek

In this paper, I adopt the view that the form which is embodied in matter gives it its essence and converts it into substance (Aristotle). I furthermore understand information as the transmissible state of the form. Living beings as substances can create order in their environment adapted to their needs. The environment in turn has the potential to change the form and other causes such as matter, efficiency/functionality, and goal/intention. Living beings can internalize these changes, propagate them through replication, or share them as information with others. Living beings have progressively acquired through this process advanced form- and information-processing and generation abilities. This positive feedback loop with enhancement in form and information has become one of the main drivers of biological evolution. Based on these considerations, I will address the nature of form and information and the changes that they have undergone during biological evolution.

在本文中,我采用的观点是,体现在物质中的形式赋予物质以本质,并将其转化为物质(亚里士多德)。此外,我还将信息理解为形式的可传递状态。生物作为物质,可以在环境中创造适应其需要的秩序。反过来,环境也有可能改变形式和其他原因,如物质、效率/功能和目标/意图。生物可以将这些变化内化,通过复制传播,或作为信息与他人分享。通过这一过程,生物逐渐获得了先进的形式和信息处理和生成能力。这种形式和信息增强的正反馈循环已成为生物进化的主要驱动力之一。基于以上考虑,我将讨论形式和信息的本质以及它们在生物进化过程中所经历的变化。
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引用次数: 0
Model Organism Databases and Algorithms: A Computing Mechanism for Cross-species Research 模式生物数据库和算法:跨物种研究的计算机制
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-09-16 DOI: 10.1007/s10699-024-09962-z
Sim-Hui Tee

Model organism databases are used extensively for knowledge retrieval and knowledge sharing among biologists. With the invention of genome sequencing and protein profiling technologies, large amount of molecular data provides practical insights into the molecular study of model organisms. The knowledge-intensive characteristic of model organism databases provides a reference point for the comparative study of other species. In this paper, I argue that algorithms could be used to facilitate cross-species research. I emphasize the epistemic significance of algorithms in the integration of data for cross-species research. I examine (1) how algorithms guide data integration in model organism databases; and (2) the importance of algorithms for the use of model organism database in the cross-species research. I argue that an extrapolation from the stored data to other species is possible in virtue of the fact that algorithms can facilitate two modes of data integration—viz., inter-level and cross-species integration. Lastly, I examine the implication of the data integration role of an algorithm in light of mechanistic explanation.

模式生物数据库被生物学家广泛用于知识检索和知识共享。随着基因组测序和蛋白质分析技术的发明,大量的分子数据为模式生物的分子研究提供了实用的见解。模式生物数据库知识密集的特点为其他物种的比较研究提供了参考点。在本文中,我认为算法可用于促进跨物种研究。我强调算法在跨物种研究数据整合中的认识论意义。我研究了(1)算法如何指导模式生物数据库中的数据整合;以及(2)算法对于在跨物种研究中使用模式生物数据库的重要性。我认为,从存储的数据推断其他物种是可能的,因为算法可以促进两种数据整合模式--即层级间整合和跨物种整合。最后,我从机理解释的角度探讨了算法的数据整合作用的意义。
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引用次数: 0
About the Concept of Molecular Structure 关于分子结构的概念
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-09-07 DOI: 10.1007/s10699-024-09963-y
Olimpia Lombardi, Giovanni Villani

The concept of molecular structure is one of the most important concepts of chemistry. In fact, molecular structure is closely related to the concept of chemical substance and its set of properties, and it is the main factor in the explanation of reactivity. In fact, much of the behavior of substances is explained in terms of the structure of their component molecules. This may explain why people tend to take the notion of molecular structure for granted. However, the problem begins already when it comes to specifying the concept, since there is no clear definition of ‘molecular structure’ valid for all chemistry. The purpose of the present article is to show that the term ‘molecular structure’ subsumes very different notions, which depend on how the molecule and its components are conceived, and each of which brings its own difficulties. In particular, we will focus on how the molecule and its structure are devised from a classical view and from a quantum–mechanical view, and will discuss the different problems related with molecular structure that arise in each case.

分子结构的概念是化学中最重要的概念之一。事实上,分子结构与化学物质的概念及其一系列性质密切相关,是解释反应性的主要因素。事实上,物质的许多行为都可以用其分子组成结构来解释。这也许可以解释为什么人们往往认为分子结构的概念是理所当然的。然而,在明确这一概念时,问题就已经开始了,因为 "分子结构 "并没有一个适用于 所有化学的明确定义。本文的目的在于说明 "分子结构 "一词包含了非常不同的概念,这些概念取决于如何理解分子及其组成部分,而且每个概念都会带来各自的困难。我们将特别关注如何从经典视角和量子力学视角设计分子及其结构,并将讨论在每种情况下出现的与分子结构有关的不同问题。
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引用次数: 0
Understanding the Interaction Between the Divergence of Science and the Convergence of Technology Based on Polanyi’s Thoughts on Science 基于波兰尼的科学思想理解科学的分化与技术的融合之间的相互作用
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-08-24 DOI: 10.1007/s10699-024-09961-0
Jianzhong Li

The increasing interplay of science and technology is often portrayed with an air of inevitability, but few studies explicitly discuss the source and nature of their interaction. Based on Polanyi’s thoughts on science, technology and personal research activity, in this paper, we consider the relationship between the (relative) divergence of science and the (relative) convergence of technology, and use it to analyse the interaction between science and technology. In particular, we consider the inter-confinement between science and technology that can be attributed to the interaction between the divergence of science and the convergence of technology. This science-technology nexus might have its impact on achieving technology-science progress.

科学与技术之间日益增强的相互作用常常被描绘得不可避免,但很少有研究明确讨论它们之间相互作用的根源和性质。本文以波兰尼关于科学、技术和个人研究活动的思想为基础,探讨了科学(相对)发散与技术(相对)趋同之间的关系,并以此分析了科学与技术之间的相互作用。特别是,我们考虑了科学与技术之间的相互联系,这种联系可归因于科学的发散与技术的趋同之间的相互作用。这种科学与技术的联系可能会对实现技术与科学的进步产生影响。
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引用次数: 0
Between Understanding and Control: Science as a Cultural Product 理解与控制之间:作为文化产品的科学
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-08-06 DOI: 10.1007/s10699-024-09960-1
Flavio Del Santo

Since the early days of humankind, people have been asking questions about Nature of two kinds: why did that happen? And how can that be used? In a broad sense, science was born that day. We show indeed that science has two complementary and interdependent souls that aim, respectively, to how to understand and how to control Nature. Through a broad historical analysis, this essay aims to (1) give an account of the development of science as an oscillation and an interplay between its two intrinsic natures, (2) demonstrate that this happened already in ancient times starting from the 6th century BC, and (3) the fact that in different periods one of the two natures was largely favored over the other is a consequence of science being a cultural product of the different social-historical contexts.

自人类诞生之初,人们就开始对大自然提出两类问题:为什么会发生这种情况?以及如何利用它?从广义上讲,科学就诞生于那一天。我们确实表明,科学有两个相辅相成、相互依存的灵魂,其目标分别是如何认识自然和如何控制自然。通过广泛的历史分析,本文旨在:(1) 将科学的发展描述为其两种内在本质之间的摇摆和相互作用;(2) 证明从公元前 6 世纪开始,这在古代就已经发生了;(3) 在不同时期,这两种本质中的一种在很大程度上优于另一种,这是科学作为不同社会历史背景下的文化产物的结果。
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引用次数: 0
Are Interactive Exhibits at a Science Center Cognitive Artifacts? 科学中心的互动展品是认知文物吗?
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-08-02 DOI: 10.1007/s10699-024-09959-8
Marcin Trybulec, Ilona Iłowiecka-Tańska

The paper examines the semiotic and cognitive status of interactive exhibits at science centers, taking the Copernicus Science Center in Warsaw (CSC) as an example. Such science centers support bottom-up interactions, encouraging visitors to spontaneously explore the exhibits in various ways. We analyze one distinctive way of interaction, when young visitors ignore an exhibit’s instruction and use it as if it were a kind of a toy or machine to play with (this is particularly common with exhibits that are unfamiliar “open-ended objects”). Drawing on cognitive semiotics we describe this particular way of interacting with exhibits as the reality mode of experience, in which the user ignores an intended exhibit’s representational function. We consider whether such interactive objects can be framed as cognitive artifacts, given that standard conceptualizations of artifacts emphasize their representational function. How can we convincingly describe the process by which the cognitive function of an exhibit experienced in reality mode is constituted? In this paper we apply concept of ecological cognitive artifact and the idea of the enactive signification to these questions. We argue that exhibits experienced in reality mode do indeed perform cognitive functions, even in the absence of a representational relation. Our investigation provides insights into the cognitive functions of exhibits and contributes to the conceptualization of non-representational cognitive artifacts.

本文以华沙哥白尼科学中心(CSC)为例,探讨了科学中心互动展品的符号学和认知状况。这类科学中心支持自下而上的互动,鼓励参观者以各种方式自发探索展品。我们分析了一种独特的互动方式,即年轻参观者无视展品的说明,把它当作玩具或机器来玩(这种情况在不熟悉的 "开放式物品 "展品中尤为常见)。借鉴认知符号学,我们将这种与展品互动的特殊方式描述为现实体验模式,在这种模式下,用户会忽略展品的预期表征功能。鉴于人工制品的标准概念强调其表征功能,我们考虑是否可以将这种互动物品视为认知人工制品。我们如何才能令人信服地描述在现实模式下体验展品的认知功能的构成过程?在本文中,我们将生态认知人工制品的概念和能动符号的理念应用于这些问题。我们认为,在现实模式中体验到的展品确实具有认知功能,即使在没有表征关系的情况下也是如此。我们的研究为展品的认知功能提供了见解,并为非表象认知人工制品的概念化做出了贡献。
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引用次数: 0
A Delicate Balancing Act: Integrative Pluralism and the Pursuit of Unified Theories 微妙的平衡术:综合多元论与统一理论的追求
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-30 DOI: 10.1007/s10699-024-09958-9
Marcin Miłkowski

This paper examines the interplay between integrative explanatory pluralism and the quest for unified theories. We argue that when grounded in virtues associated with satisfactory explanations, integrative pluralism exhibits an inherent instability stemming from the conflict between the demand for unity and the commitment to preserving a patchwork of disparate partial explanations. A case study in cognitive science illuminates the challenges of maintaining both systematicity and depth in explanations within this framework. While this instability does not render integrative pluralism fundamentally flawed, it stresses the importance of a diachronic analysis of scientific dynamics and norms. The conclusion highlights the continued value of integrative pluralism in interdisciplinary research programs, while emphasizing its role as a temporary rather than permanent approach.

本文探讨了整合解释多元论与追求统一理论之间的相互作用。我们认为,当以与令人满意的解释相关的美德为基础时,整合多元论就会表现出内在的不稳定性,这种不稳定性源于对统一性的要求与对保留不同部分解释的承诺之间的冲突。认知科学中的一个案例研究揭示了在这一框架内保持解释的系统性和深度所面临的挑战。虽然这种不稳定性并没有使整合多元论从根本上存在缺陷,但它强调了对科学动态和规范进行非同步分析的重要性。结论强调了整合多元论在跨学科研究计划中的持续价值,同时强调了它作为一种临时而非永久性方法的作用。
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引用次数: 0
Optimized Skin Lesion Segmentation: Analysing DeepLabV3+ and ASSP Against Generative AI-Based Deep Learning Approach 优化皮损分割:用基于生成式人工智能的深度学习方法分析 DeepLabV3+ 和 ASSP
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-09 DOI: 10.1007/s10699-024-09957-w
Hassan Masood, Asma Naseer, Mudassir Saeed

Accurate skin lesion segmentation is an important task in dermatology for facilitating early diagnosis and treatment planning. The challenges in skin lesion segmentation comprehend the variability in lesion, low contrast, heterogeneous backgrounds, overlapping or connected lesions, noise and certain artifacts. Despite of these challenges, Deep learning models accomplish remarkable results for skin lesion segmentation by automatically learning discriminative features. The current research introduces a novel approach utilizing the ASSP-based Deeplabv3+ for skin lesion segmentation along with other UNET-based learners while employing VGG-16, VGG-19 and Dense nets as encoders. In addition, an analysis is conducted on GAN-UNET to evaluate the potential of Generative Artificial Intelligence in generating segmented images of skin lesions. Three benchmark medical image datasets, namely ISIC-2016, ISIC-2018, and HAM10000 Lesion Boundary Segmentation, are used to evaluate all five models. The models are trained exclusively on the ISIC-2018 dataset. A comparative analysis is performed, comparing the performance of these models against state-of-the-art segmentation methods, focusing on standard computer vision metrics. The proposed Deeplabv3+ model outperforms by showcasing its ability to accurately delineate skin lesions and surpassing existing techniques in terms of segmentation accuracy as 0.97, Jaccard coefficient as 0.84 and dice coefficient as 0.91.

准确的皮损分割是皮肤病学的一项重要任务,有助于早期诊断和治疗规划。皮损分割面临的挑战包括皮损的可变性、低对比度、异质背景、重叠或相连的皮损、噪声和某些伪影。尽管存在这些挑战,深度学习模型通过自动学习辨别特征,在皮肤病变分割方面取得了显著效果。当前的研究引入了一种新方法,利用基于 ASSP 的 Deeplabv3+ 和其他基于 UNET 的学习器进行皮损分割,同时采用 VGG-16、VGG-19 和 Dense 网作为编码器。此外,还对 GAN-UNET 进行了分析,以评估生成式人工智能在生成皮损分割图像方面的潜力。三个基准医学图像数据集(即 ISIC-2016、ISIC-2018 和 HAM10000 病变边界分割)用于评估所有五个模型。这些模型完全是在 ISIC-2018 数据集上训练的。我们进行了对比分析,将这些模型的性能与最先进的分割方法进行了比较,重点是标准计算机视觉指标。拟议的 Deeplabv3+ 模型表现优异,展示了其准确划分皮肤病变的能力,并在分割准确率(0.97)、雅卡德系数(0.84)和骰子系数(0.91)方面超越了现有技术。
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引用次数: 0
Extending a Model Language to Handle Entangled Concepts in Artificial Intelligence 扩展模型语言,处理人工智能中的纠缠概念
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-08 DOI: 10.1007/s10699-024-09956-x
Roberto Leporini

In quantum information and computation, entanglement is a resource. When combining concepts, the application of entanglement outside of micro-physical systems is an useful tool. We suggest new cognitive image-based tests that do not need to be translated. No prior knowledge of terms related to the concepts is required, therefore the choice is more intuitive. We examine the merging of two concepts that establish non-classical statistical correlation and present an entanglement-aware vector encoding algorithm. This research’s added value results in an automated system that teaches artificial intelligence to identify and handle entangled concepts.

在量子信息和计算中,纠缠是一种资源。在结合概念时,在微观物理系统之外应用纠缠是一种有用的工具。我们提出了无需翻译的基于认知图像的新测试。无需事先了解与概念相关的术语,因此选择更加直观。我们研究了建立非经典统计相关性的两个概念的合并,并提出了一种纠缠感知向量编码算法。这项研究的附加值体现在一个自动系统上,它可以教人工智能识别和处理纠缠概念。
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引用次数: 0
Quantum Ontology: A Modal Bundle-Theorist Relational Proposal 量子本体论:模态捆绑理论的关系提议
IF 0.9 4区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-04 DOI: 10.1007/s10699-024-09955-y
Matías Pasqualini

Quantum mechanics poses several challenges in ontological elucidation. Contextuality threatens determinism and favors realism about possibilia. Indistinguishability challenges traditional identity criteria associated with individual objects. Entanglement favors holistic and relational approaches. These issues, in close connection with different interpretations of quantum mechanics, have given rise to various proposals for the ontology of quantum mechanics. There is a proposal that is realistic about possibilia, where quantum systems are seen as bundles of possible intrinsic properties. This proposal is developed in close connection with modal interpretations and addresses quantum contextuality straightforwardly. There are also proposals based on relations, associated with the relational quantum mechanics interpretation. In this paper, features of these proposals are combined to obtain a modal bundle-theorist relational proposal. Its aim is to consistently and straightforwardly address both contextuality and the holistic and relational aspects of quantum mechanics arising from quantum entanglement. The proposal, if some additional principles are assumed, may turn out to be both an instance of moderate structuralism and priority monism.

量子力学在本体论阐释方面提出了若干挑战。情境性对决定论构成威胁,而对可能性则倾向于现实主义。可区分性挑战了与单个对象相关的传统身份标准。纠缠倾向于整体性和关系性方法。这些问题与对量子力学的不同解释密切相关,引发了关于量子力学本体论的各种提议。有一种建议对可能性持现实态度,将量子系统视为可能的内在属性束。这一提议是在与模态解释紧密联系的基础上提出的,并直接解决了量子语境性问题。还有一些基于关系的建议,与关系量子力学解释相关。在本文中,这些建议的特点被结合起来,从而获得了模态束理论的关系建议。其目的是一致而直接地解决量子纠缠所产生的量子力学的语境性、整体性和关系性问题。如果假定有一些额外的原则,那么该建议可能会成为温和结构主义和优先一元论的实例。
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引用次数: 0
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