Pub Date : 2025-01-30DOI: 10.1007/s10699-024-09971-y
Sidiney B. Montanhano
Multi-agent scenarios, like Wigner’s friend and Frauchiger–Renner scenarios, can show contradictory results when a non-classical formalism must deal with the knowledge between agents. Such paradoxes are described with multi-modal logic as violations of the structure in classical logic. Even if knowledge is treated in a relational way with the concept of trust, contradictory results can still be found in multi-agent scenarios. Contextuality deals with global inconsistencies in empirical models defined on measurement scenarios even when there is local consistency. In the present work, we take a step further to treat the scenarios in full relational language by using knowledge operators, thus showing that trust is equivalent to the Truth Axiom in these cases. A translation of measurement scenarios into multi-agent scenarios by using the topological semantics of multi-modal logic is constructed, demonstrating that logical contextuality can be understood as the violation of soundness by supposing mutual knowledge. To address the contradictions, assuming distributed knowledge is considered, which eliminates such violations but at the cost of lambda-dependence. We conclude by translating the main examples of multi-agent scenarios to their empirical model representation, contextuality is identified as the cause of their contradictory results.
{"title":"Wigner and Friends, A Map is not the Territory! Contextuality in Multi-agent Paradoxes","authors":"Sidiney B. Montanhano","doi":"10.1007/s10699-024-09971-y","DOIUrl":"https://doi.org/10.1007/s10699-024-09971-y","url":null,"abstract":"<p>Multi-agent scenarios, like Wigner’s friend and Frauchiger–Renner scenarios, can show contradictory results when a non-classical formalism must deal with the knowledge between agents. Such paradoxes are described with multi-modal logic as violations of the structure in classical logic. Even if knowledge is treated in a relational way with the concept of trust, contradictory results can still be found in multi-agent scenarios. Contextuality deals with global inconsistencies in empirical models defined on measurement scenarios even when there is local consistency. In the present work, we take a step further to treat the scenarios in full relational language by using knowledge operators, thus showing that trust is equivalent to the Truth Axiom in these cases. A translation of measurement scenarios into multi-agent scenarios by using the topological semantics of multi-modal logic is constructed, demonstrating that logical contextuality can be understood as the violation of soundness by supposing mutual knowledge. To address the contradictions, assuming distributed knowledge is considered, which eliminates such violations but at the cost of lambda-dependence. We conclude by translating the main examples of multi-agent scenarios to their empirical model representation, contextuality is identified as the cause of their contradictory results.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"18 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143056608","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-14DOI: 10.1007/s10699-025-09972-5
Francis Heylighen
This paper explores how the epistemic emotions of curiosity, awe, and wonder can motivate us to expand our understanding. Curiosity drives us to fill a local gap in our knowledge. Awe is a mixture of fear and fascination for something so vast and mysterious that it challenges our understanding, thus inciting cognitive accommodation. Wonder is intermediate between curiosity and awe. Awe is commonly understood as a religious emotion, a reverence for the “numinous”—a transcendent reality out of bounds for ordinary humans. Awe has also been conceived as a scientific emotion, a desire to explore an infinite realm of potentiality. The latter defines “raw transcendence”, a willingness to go beyond any boundary imposed by tradition or authority. Newtonian science ignores such emotions, proposing a purely rational, reductionist picture of the world as a clockwork mechanism. However, the new scientific worldview sees the universe as evolving while producing endless novelty. The scientific investigation of this potential can benefit from practices that promote awe and wonder. These include experiencing landscapes, artistic beauty, complex patterns, and mathematical infinity. Awe and wonder thus can help us to realize the Enlightenment's promise of unbounded progress in our understanding of the universe.
{"title":"Curiosity, Awe and Wonder: The Emotions that Open Our Mind","authors":"Francis Heylighen","doi":"10.1007/s10699-025-09972-5","DOIUrl":"https://doi.org/10.1007/s10699-025-09972-5","url":null,"abstract":"<p>This paper explores how the epistemic emotions of curiosity, awe, and wonder can motivate us to expand our understanding. Curiosity drives us to fill a local gap in our knowledge. Awe is a mixture of fear and fascination for something so vast and mysterious that it challenges our understanding, thus inciting cognitive accommodation. Wonder is intermediate between curiosity and awe. Awe is commonly understood as a religious emotion, a reverence for the “numinous”—a transcendent reality out of bounds for ordinary humans. Awe has also been conceived as a scientific emotion, a desire to explore an infinite realm of potentiality. The latter defines “raw transcendence”, a willingness to go beyond any boundary imposed by tradition or authority. Newtonian science ignores such emotions, proposing a purely rational, reductionist picture of the world as a clockwork mechanism. However, the new scientific worldview sees the universe as evolving while producing endless novelty. The scientific investigation of this potential can benefit from practices that promote awe and wonder. These include experiencing landscapes, artistic beauty, complex patterns, and mathematical infinity. Awe and wonder thus can help us to realize the Enlightenment's promise of unbounded progress in our understanding of the universe.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"46 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2025-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142974675","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-13DOI: 10.1007/s10699-024-09965-w
Mirella Fortino
In this article, which testifies the European dimension of Federigo Enriques, an essential question is raised: is it conceivable to admit a radical antithesis between logical empiricism or neo-empiricism and the Enriquesian view of scientific thought? This paper therefore analyses the relationship between Enriques’ conception of science and that of Otto Neurath, one of the main representatives of neo-empiricism. While the interest towards empiricism in Enriques’ conception of the scientific knowledge is emphasised, it cannot be denied that the relationship of Enriques’ epistemology to the scientific idea of the world appears problematic. However, elements of convergence between Neurath and Enriques are discernible above all in the neo-empiricist principle of verification, in the idea of the unity of science and in the recognition by both of the historical nature of the scientific enterprise. In particular, the comparison is emphasised between Neurath’s idea of the encyclopaedia and Enriques’ rationalism, that highlights how, on closer inspection, Neurath’s critical view is not a true antithesis of the historical perspective of science.
{"title":"On the Neo-Empiricist Thesis and Historicity of Science: Enriques and Neurath","authors":"Mirella Fortino","doi":"10.1007/s10699-024-09965-w","DOIUrl":"https://doi.org/10.1007/s10699-024-09965-w","url":null,"abstract":"<p>In this article, which testifies the European dimension of Federigo Enriques, an essential question is raised: is it conceivable to admit a radical antithesis between logical empiricism or neo-empiricism and the Enriquesian view of scientific thought? This paper therefore analyses the relationship between Enriques’ conception of science and that of Otto Neurath, one of the main representatives of neo-empiricism. While the interest towards empiricism in Enriques’ conception of the scientific knowledge is emphasised, it cannot be denied that the relationship of Enriques’ epistemology to the scientific idea of the world appears problematic. However, elements of convergence between Neurath and Enriques are discernible above all in the neo-empiricist principle of verification, in the idea of the unity of science and in the recognition by both of the historical nature of the scientific enterprise. In particular, the comparison is emphasised between Neurath’s idea of the encyclopaedia and Enriques’ rationalism, that highlights how, on closer inspection, Neurath’s critical view is not a true antithesis of the historical perspective of science.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"29 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2025-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142974671","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-27DOI: 10.1007/s10699-024-09967-8
Vincenzo Fano, Marco Sanchioni
This paper conducts a Bayesian analysis of the Hubble tension, which addresses the discrepancy between local measurements of the Hubble Constant (H_0) and the value predicted by the (Lambda )CDM model based on Cosmic Microwave Background data. By incorporating new, independent data from the James Webb Space Telescope released in August 2024, the analysis shows that, unlike before, there is no longer strong evidence to suggest that the (Lambda )CDM model is incorrect. As a result, the Hubble tension appears to ease somewhat, indicating that the previously perceived crisis in cosmology may have been overstated, and the standard model remains robust.
{"title":"A Bayesian Analysis of the Hubble Tension","authors":"Vincenzo Fano, Marco Sanchioni","doi":"10.1007/s10699-024-09967-8","DOIUrl":"https://doi.org/10.1007/s10699-024-09967-8","url":null,"abstract":"<p>This paper conducts a Bayesian analysis of the Hubble tension, which addresses the discrepancy between local measurements of the Hubble Constant <span>(H_0)</span> and the value predicted by the <span>(Lambda )</span>CDM model based on Cosmic Microwave Background data. By incorporating new, independent data from the James Webb Space Telescope released in August 2024, the analysis shows that, unlike before, there is no longer strong evidence to suggest that the <span>(Lambda )</span>CDM model is incorrect. As a result, the Hubble tension appears to ease somewhat, indicating that the previously perceived crisis in cosmology may have been overstated, and the standard model remains robust.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"41 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142887425","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-26DOI: 10.1007/s10699-024-09970-z
Shengyang Zhong
To model a (particular kind of) physical system, the perspective that encompasses preparations, tests and the interplay between them is crucial. In this paper, we employ the conceptual and technical framework presented by Buffernoir (2023) to model physical systems through this pivotal lens, utilizing Chu spaces. With some intuitive and operational axioms we manage to reproduce the following fundamental and abstract results, as well as (part of) the involved reasoning: (1) the states corresponding to a property form a (bi-orthogonally) closed set; (2) the properties form an orthomodular lattice. Adding some idealistic axioms, we can derive: (1) the pure states form a quantum Kripke frame in the sense of Zhong (2017, 2021, 2023); (2) the properties form an irreducible propositional system in the sense of Piron (1976), isomorphic to the lattice of closed sets of pure states. Our axioms are different from those in Buffernoir (2023): on the one hand, they say less about the structure of mixed states; on the other hand, they are arguably more intuitive and operational. The work formalizes some important reasoning about quantum systems, reveals some implicit idealization behind the Hilbert space formalism of quantum theory and hints at other possible formalisms. Finally, it is argued that the framework can be applied to classical physics at an abstract level as well as naturally extended with probabilities.
{"title":"Preparation and Test in Physics","authors":"Shengyang Zhong","doi":"10.1007/s10699-024-09970-z","DOIUrl":"https://doi.org/10.1007/s10699-024-09970-z","url":null,"abstract":"<p>To model a (particular kind of) physical system, the perspective that encompasses preparations, tests and the interplay between them is crucial. In this paper, we employ the conceptual and technical framework presented by Buffernoir (2023) to model physical systems through this pivotal lens, utilizing Chu spaces. With some intuitive and operational axioms we manage to reproduce the following fundamental and abstract results, as well as (part of) the involved reasoning: (1) the states corresponding to a property form a (bi-orthogonally) closed set; (2) the properties form an orthomodular lattice. Adding some idealistic axioms, we can derive: (1) the pure states form a quantum Kripke frame in the sense of Zhong (2017, 2021, 2023); (2) the properties form an irreducible propositional system in the sense of Piron (1976), isomorphic to the lattice of closed sets of pure states. Our axioms are different from those in Buffernoir (2023): on the one hand, they say less about the structure of mixed states; on the other hand, they are arguably more intuitive and operational. The work formalizes some important reasoning about quantum systems, reveals some implicit idealization behind the Hilbert space formalism of quantum theory and hints at other possible formalisms. Finally, it is argued that the framework can be applied to classical physics at an abstract level as well as naturally extended with probabilities.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"129 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142887057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-23DOI: 10.1007/s10699-024-09968-7
Rinat M. Nugayev
It is contended that one of the promising directions for brooding over the problem of incommensurability of paradigms, coined by T. Kuhn and P. Feyerabend, may be associated with the trend of neo-Kantian epistemology, embodied by the writings of Ernst Cassirer. According to Cassirer, the statements fixing connections and relationships between mathematical ideal constructs render a reliable ‘neutral language’ that can serve as a firm ground for comparing the ‘old’ and ‘new’ paradigms. The aim of the paper is to offer Maxwell’s work as a test case against the incommensurability thesis. A case study of the genesis and functioning of a neutral mathematical language related to the Maxwellian solid synthesis of optics and electromagnetism is provided. It is elicited that its basis is constituted by stodgy language of continuum mechanics. The main function of the neutral language was to project the consequences of all the unified partial theoretical schemes (‘old’ rival paradigms) of Ampѐre, Faraday, Biot, Savar et al. onto the grand mathematical model, ‘rewrite’ all known laws in this pervasive mathematical language, compare their conclusions with each other to eliminate contradictions. Eventually the stuff was generalized in a self-consistent system of Maxwell’s equations.
{"title":"Maxwell’s Masterful Entanglement of Optics and Electromagnetism: Bottomed Questioning the Incommensurability Tenet","authors":"Rinat M. Nugayev","doi":"10.1007/s10699-024-09968-7","DOIUrl":"https://doi.org/10.1007/s10699-024-09968-7","url":null,"abstract":"<p>It is contended that one of the promising directions for brooding over the problem of incommensurability of paradigms, coined by T. Kuhn and P. Feyerabend, may be associated with the trend of neo-Kantian epistemology, embodied by the writings of Ernst Cassirer. According to Cassirer, the statements fixing connections and relationships between mathematical ideal constructs render a reliable ‘neutral language’ that can serve as a firm ground for comparing the ‘old’ and ‘new’ paradigms. The aim of the paper is to offer Maxwell’s work as a test case against the incommensurability thesis. A case study of the genesis and functioning of a neutral mathematical language related to the Maxwellian solid synthesis of optics and electromagnetism is provided. It is elicited that its basis is constituted by stodgy language of continuum mechanics. The main function of the neutral language was to project the consequences of all the unified partial theoretical schemes (‘old’ rival paradigms) of Ampѐre, Faraday, Biot, Savar et al. onto the grand mathematical model, ‘rewrite’ all known laws in this pervasive mathematical language, compare their conclusions with each other to eliminate contradictions. Eventually the stuff was generalized in a self-consistent system of Maxwell’s equations.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"32 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142880265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-18DOI: 10.1007/s10699-024-09969-6
Marek Sikora
The article is an exploration into the problem of the ethos of modern science viewed from the representationalist and interventionist perspectives. The representationalist account of science is associated with the position of theoreticism, while the interventionist account pertains to the concept of new experimentalism. The former of these approaches is dominated by the ethos of science which Robert K. Merton defined as comprising four sets of institutional imperatives referred to as ‘Mertonian norms’: universalism, communitarism, disinterestedness, and organized skepticism. In the latter approach, the concept of ethos is far more intricate. It can be described as a hybrid mix of elements derived from Mertonian norms and some constituents from the area of science that John Ziman calls “industrial science”. This article compares the two types of ethos, highlighting the need to identify and investigate nuances in the ethos embraced by individual disciplines within the area of the interventionist approach to science. It is argued that the need can be attributed to the escalating process of substituting the ideal of value-free science for the ideal of value-laden science. The phenomenon is especially evident in the field of laboratory sciences, as exemplified by the research conducted on synthetic mRNA technology. The author also draws attention to the problem of the social responsibility of disciplines from the interventionist approach to science.
本文从表征主义和干涉主义的角度探讨了现代科学的精神问题。表征主义对科学的描述与理论主义的立场有关,而干涉主义的描述与新实验主义的概念有关。前一种方法由罗伯特·k·默顿(Robert K. Merton)定义的科学精神主导,科学精神由四套被称为“默顿规范”的制度要求组成:普遍主义、社群主义、无私和有组织的怀疑主义。在后一种方法中,精神的概念要复杂得多。它可以被描述为来自默顿规范的元素和来自约翰·齐曼称之为“工业科学”的科学领域的一些成分的混合。本文比较了这两种类型的精神,强调需要识别和调查在干预主义科学方法领域内各个学科所接受的精神的细微差别。本文认为,这种需要可归因于价值自由的科学理想取代价值承载的科学理想的升级过程。这种现象在实验室科学领域尤为明显,对合成mRNA技术的研究就是例证。作者还从干涉主义的科学观出发,提出了学科的社会责任问题。
{"title":"Evolution of the Ethos of Science: From the Representationalist to the Interventionist Approach to Science","authors":"Marek Sikora","doi":"10.1007/s10699-024-09969-6","DOIUrl":"https://doi.org/10.1007/s10699-024-09969-6","url":null,"abstract":"<p>The article is an exploration into the problem of the ethos of modern science viewed from the representationalist and interventionist perspectives. The representationalist account of science is associated with the position of theoreticism, while the interventionist account pertains to the concept of new experimentalism. The former of these approaches is dominated by the ethos of science which Robert K. Merton defined as comprising four sets of institutional imperatives referred to as ‘Mertonian norms’: universalism, communitarism, disinterestedness, and organized skepticism. In the latter approach, the concept of ethos is far more intricate. It can be described as a hybrid mix of elements derived from Mertonian norms and some constituents from the area of science that John Ziman calls “industrial science”. This article compares the two types of ethos, highlighting the need to identify and investigate nuances in the ethos embraced by individual disciplines within the area of the interventionist approach to science. It is argued that the need can be attributed to the escalating process of substituting the ideal of value-free science for the ideal of value-laden science. The phenomenon is especially evident in the field of laboratory sciences, as exemplified by the research conducted on synthetic mRNA technology. The author also draws attention to the problem of the social responsibility of disciplines from the interventionist approach to science.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"51 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-20DOI: 10.1007/s10699-024-09964-x
Engin Bermek
In this paper, I adopt the view that the form which is embodied in matter gives it its essence and converts it into substance (Aristotle). I furthermore understand information as the transmissible state of the form. Living beings as substances can create order in their environment adapted to their needs. The environment in turn has the potential to change the form and other causes such as matter, efficiency/functionality, and goal/intention. Living beings can internalize these changes, propagate them through replication, or share them as information with others. Living beings have progressively acquired through this process advanced form- and information-processing and generation abilities. This positive feedback loop with enhancement in form and information has become one of the main drivers of biological evolution. Based on these considerations, I will address the nature of form and information and the changes that they have undergone during biological evolution.
{"title":"Form and Information in Biology—An Evolutionary Perspective","authors":"Engin Bermek","doi":"10.1007/s10699-024-09964-x","DOIUrl":"https://doi.org/10.1007/s10699-024-09964-x","url":null,"abstract":"<p>In this paper, I adopt the view that the form which is embodied in matter gives it its essence and converts it into substance (Aristotle). I furthermore understand information as the transmissible state of the form. Living beings as substances can create order in their environment adapted to their needs. The environment in turn has the potential to change the form and other causes such as matter, efficiency/functionality, and goal/intention. Living beings can internalize these changes, propagate them through replication, or share them as information with others. Living beings have progressively acquired through this process advanced form- and information-processing and generation abilities. This positive feedback loop with enhancement in form and information has become one of the main drivers of biological evolution. Based on these considerations, I will address the nature of form and information and the changes that they have undergone during biological evolution.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"57 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142306328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1007/s10699-024-09962-z
Sim-Hui Tee
Model organism databases are used extensively for knowledge retrieval and knowledge sharing among biologists. With the invention of genome sequencing and protein profiling technologies, large amount of molecular data provides practical insights into the molecular study of model organisms. The knowledge-intensive characteristic of model organism databases provides a reference point for the comparative study of other species. In this paper, I argue that algorithms could be used to facilitate cross-species research. I emphasize the epistemic significance of algorithms in the integration of data for cross-species research. I examine (1) how algorithms guide data integration in model organism databases; and (2) the importance of algorithms for the use of model organism database in the cross-species research. I argue that an extrapolation from the stored data to other species is possible in virtue of the fact that algorithms can facilitate two modes of data integration—viz., inter-level and cross-species integration. Lastly, I examine the implication of the data integration role of an algorithm in light of mechanistic explanation.
{"title":"Model Organism Databases and Algorithms: A Computing Mechanism for Cross-species Research","authors":"Sim-Hui Tee","doi":"10.1007/s10699-024-09962-z","DOIUrl":"https://doi.org/10.1007/s10699-024-09962-z","url":null,"abstract":"<p>Model organism databases are used extensively for knowledge retrieval and knowledge sharing among biologists. With the invention of genome sequencing and protein profiling technologies, large amount of molecular data provides practical insights into the molecular study of model organisms. The knowledge-intensive characteristic of model organism databases provides a reference point for the comparative study of other species. In this paper, I argue that algorithms could be used to facilitate cross-species research. I emphasize the epistemic significance of algorithms in the integration of data for cross-species research. I examine (1) how algorithms guide data integration in model organism databases; and (2) the importance of algorithms for the use of model organism database in the cross-species research. I argue that an extrapolation from the stored data to other species is possible in virtue of the fact that algorithms can facilitate two modes of data integration—viz., inter-level and cross-species integration. Lastly, I examine the implication of the data integration role of an algorithm in light of mechanistic explanation.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"36 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142235334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-07DOI: 10.1007/s10699-024-09963-y
Olimpia Lombardi, Giovanni Villani
The concept of molecular structure is one of the most important concepts of chemistry. In fact, molecular structure is closely related to the concept of chemical substance and its set of properties, and it is the main factor in the explanation of reactivity. In fact, much of the behavior of substances is explained in terms of the structure of their component molecules. This may explain why people tend to take the notion of molecular structure for granted. However, the problem begins already when it comes to specifying the concept, since there is no clear definition of ‘molecular structure’ valid for all chemistry. The purpose of the present article is to show that the term ‘molecular structure’ subsumes very different notions, which depend on how the molecule and its components are conceived, and each of which brings its own difficulties. In particular, we will focus on how the molecule and its structure are devised from a classical view and from a quantum–mechanical view, and will discuss the different problems related with molecular structure that arise in each case.
{"title":"About the Concept of Molecular Structure","authors":"Olimpia Lombardi, Giovanni Villani","doi":"10.1007/s10699-024-09963-y","DOIUrl":"https://doi.org/10.1007/s10699-024-09963-y","url":null,"abstract":"<p>The concept of molecular structure is one of the most important concepts of chemistry. In fact, molecular structure is closely related to the concept of chemical substance and its set of properties, and it is the main factor in the explanation of reactivity. In fact, much of the behavior of substances is explained in terms of the structure of their component molecules. This may explain why people tend to take the notion of molecular structure for granted. However, the problem begins already when it comes to specifying the concept, since there is no clear definition of ‘molecular structure’ valid for all chemistry. The purpose of the present article is to show that the term ‘molecular structure’ subsumes very different notions, which depend on how the molecule and its components are conceived, and each of which brings its own difficulties. In particular, we will focus on how the molecule and its structure are devised from a classical view and from a quantum–mechanical view, and will discuss the different problems related with molecular structure that arise in each case.</p>","PeriodicalId":55146,"journal":{"name":"Foundations of Science","volume":"249 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142144231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}