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Plankton biogeography in the 21st century and impacts of climate change: advances through genomics. 21世纪浮游生物生物地理学与气候变化的影响:基因组学进展。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2023-02-02 DOI: 10.5802/crbiol.107
Paul Frémont, Marion Gehlen, Olivier Jaillon

This article summarizes recent advances in our knowledge of plankton biogeography obtained by genomic approaches and the impacts of global warming on it. Large-scale comparison of the genomic content of samples of different plankton size fractions revealed a partitioning of the oceans into genomic provinces and the impact of major oceanic currents on them. By defining ecological niches, these provinces are extrapolated to all oceans, with the exception of the Arctic Ocean. By the end of the 21st century, a major restructuring of these provinces is projected in response to a high emission greenhouse gas scenario over 50% of the surface of the studied oceans. Such a restructuring could lead to a decrease in export production by 4%. Finally, obtaining assembled sequences of a large number of plankton genomes defining this biogeography has allowed to better characterize the genomic content of the provinces and to identify the species structuring them. These genomes similarly enabled a better description of potential future changes of plankton communities under climate change.

本文总结了通过基因组方法获得的浮游生物生物地理学知识的最新进展以及全球变暖对其的影响。对不同浮游生物大小组分样本的基因组含量进行大规模比较,揭示了海洋被划分为基因组省以及主要洋流对其的影响。通过定义生态位,这些省份被外推到除北冰洋以外的所有海洋。到21世纪末,预计将对这些省份进行重大重组,以应对所研究海洋表面50%以上的高排放温室气体情景。这样的重组可能导致出口产量下降4%。最后,获得定义这一生物地理学的大量浮游生物基因组的组装序列,可以更好地表征各省的基因组含量,并确定构成这些基因组的物种。这些基因组同样能够更好地描述气候变化下浮游生物群落未来的潜在变化。
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引用次数: 0
Phylogenomics reveal that plants colonized land together with their fungal symbiotic partners. 系统发育基因组学揭示了植物与其真菌共生伙伴一起在陆地上定居。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2023-02-02 DOI: 10.5802/crbiol.105
Mélanie Rich

Most extant land plants establish a mutually beneficial relationship with soil fungi called mycorrhizal symbiosis. From their partners, plants get access to mineral nutrient and water resources transported via a fungal network that acts like an extension of their root systems. Using genetic and molecular tools, we showed that distant plant species use similar molecular mechanisms during the symbiosis. This similarity suggests that those mechanisms were inherited from their last common ancestor, a lineage that emerged from an aquatic environment 450 million years ago. Thus, this plant fungal interaction could have helped the first land plants without structures adapted to soil exploration to survive and colonize this new environment.

大多数现存的陆地植物与土壤真菌建立了一种互利的关系,称为菌根共生。植物从它们的伴侣那里获得了通过真菌网络输送的矿物质营养和水资源,真菌网络就像是它们根系的延伸。利用遗传和分子工具,我们发现远缘植物物种在共生过程中使用类似的分子机制。这种相似性表明,这些机制是从它们的最后一个共同祖先那里继承来的,这个祖先是4.5亿年前从水生环境中出现的。因此,这种植物与真菌的相互作用本可以帮助第一批没有适合土壤探索的结构的陆地植物在这种新环境中生存和定居。
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引用次数: 0
A new giant bacterium reminiscent of eukaryotes. 一种新的巨型细菌,使人联想到真核生物。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.87
Patrick Berche
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引用次数: 0
Constraints and frustration in the clathrin-dependent endocytosis pathway. 网格蛋白依赖性内吞途径的限制和挫折。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.88
Julie Bruna-Gauchoux, Guillaume Montagnac

Clathrin-dependent endocytosis is the major pathway for the entry of most surface receptors and their ligands. It is controlled by clathrin-coated structures that are endowed with the ability to cluster receptors and locally bend the plasma membrane, leading to the formation of receptor-containing vesicles budding into the cytoplasm. This canonical role of clathrin-coated structures has been repeatedly demonstrated to play a fundamental role in a wide range of aspects of cell physiology. However, it is now clearly established that the ability of clathrin-coated structures to bend the membrane can be disrupted. In addition to chemical or genetic alterations, many environmental conditions can physically prevent or slow membrane deformation and/or budding of clathrin-coated structures. The resulting frustrated endocytosis is not only a passive consequence but serves very specific and important cellular functions. Here we provide a historical perspective as well as a definition of frustrated endocytosis in the clathrin pathway before describing its causes and many functional consequences.

网格蛋白依赖性内吞作用是大多数表面受体及其配体进入的主要途径。它是由网格蛋白包裹的结构控制的,这些结构具有聚集受体和局部弯曲质膜的能力,导致含有受体的小泡的形成,出芽进入细胞质。网格蛋白包被结构的这种典型作用已被反复证明在细胞生理学的广泛方面起着基本作用。然而,现在已经清楚地确定,网格蛋白涂层结构弯曲膜的能力可能会被破坏。除了化学或遗传改变外,许多环境条件可以物理地阻止或减缓膜变形和/或网格蛋白包覆结构的出芽。由此导致的内吞作用受挫不仅是一个被动的结果,而且具有非常特殊和重要的细胞功能。在描述其原因和许多功能后果之前,我们提供了一个历史视角以及网格蛋白途径中受挫内吞作用的定义。
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引用次数: 0
Huntington's disease and brain development. 亨廷顿舞蹈症和大脑发育
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.93
Sandrine Humbert, Monia Barnat

Huntington's disease is a rare inherited neurological disorder that generally manifests in mild-adulthood. The disease is characterized by the dysfunction and the degeneration of specific brain structures leading progressively to psychiatric, cognitive and motor disorders. The disease is caused by a mutation in the gene coding for huntingtin and, although it appears in adulthood, embryos carry the mutated gene from their development in utero. Studies based on mouse models and human stem cells have reported altered developmental mechanisms in disease conditions. However, does the mutation affect development in humans? Focusing on the early stages of brain development in human fetuses carrying the HD mutation, we have identified abnormalities in the development of the neocortex, the structure that ensure higher cerebral functions. Altogether, these studies suggests that developmental defects could contribute to the onset symptoms in adults, changing the perspective on disease and thus the health care of patients.

亨廷顿氏病是一种罕见的遗传性神经系统疾病,通常表现在轻度成年期。该疾病的特点是特定大脑结构的功能障碍和退化,逐渐导致精神、认知和运动障碍。这种疾病是由亨廷顿蛋白编码基因的突变引起的,尽管它出现在成年期,但胚胎在子宫内发育时就携带了突变的基因。基于小鼠模型和人类干细胞的研究报告了疾病条件下改变的发育机制。然而,这种突变会影响人类的发育吗?关注携带HD突变的人类胎儿大脑发育的早期阶段,我们已经确定了新皮层发育的异常,新皮层是确保大脑高级功能的结构。总之,这些研究表明,发育缺陷可能有助于成人的发病症状,改变对疾病的看法,从而改变患者的医疗保健。
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引用次数: 1
Plasmodium vivax blood stage invasion pathways: Contribution of omics technologies in deciphering molecular and cellular mechanisms. 间日疟原虫血期侵袭途径:组学技术在破译分子和细胞机制中的贡献。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.95
Isabelle Bouyssou, Francisco José Martínez, Pascal Campagne, Laurence Ma, Cécile Doderer-Lang, Chetan E Chitnis, Didier Ménard

Vivax malaria is an infectious disease caused by Plasmodium vivax, a parasitic protozoan transmitted by female Anopheline mosquitoes. Historically, vivax malaria has often been regarded as a benign self-limiting infection due to the observation of low parasitemia in Duffy-positive patients in endemic transmission areas and the virtual absence of infections in Duffy-negative individuals in Sub Saharan Africa. However, the latest estimates show that the burden of the disease is not decreasing in many countries and cases of vivax infections in Duffy-negative individuals are increasingly reported throughout Africa. This raised questions about the accuracy of diagnostics and the evolution of interactions between humans and parasites. For a long time, our knowledge on P. vivax biology has been hampered due to the limited access to biological material and the lack of robust in vitro culture methods. Consequently, little is currently known about P. vivax blood stage invasion mechanisms. The introduction of omics technologies with novel and accessible techniques such as third generation sequencing and RNA sequencing at single cell level, two-dimensional electrophoresis, liquid chromatography, and mass spectrometry, has progressively improved our understanding of P. vivax genetics, transcripts, and proteins. This review aims to provide broad insights into P. vivax invasion mechanisms generated by genomics, transcriptomics, and proteomics and to illustrate the importance of integrated multi-omics studies.

间日疟疾是一种由间日疟原虫引起的传染病,间日疟原虫是一种由雌性按蚊传播的寄生原生动物。从历史上看,间日疟疾通常被认为是一种良性的自限性感染,因为在流行传播地区观察到达菲阳性患者的寄生虫率很低,而在撒哈拉以南非洲,达菲阴性个体几乎没有感染。然而,最新的估计表明,在许多国家,这种疾病的负担并没有减少,整个非洲报告的达菲阴性个体的间日感染病例越来越多。这对诊断的准确性和人类与寄生虫之间相互作用的演变提出了疑问。长期以来,我们对间日疟原虫生物学的认识一直受到生物材料获取有限和缺乏强大的体外培养方法的阻碍。因此,目前对间日疟原虫血期侵袭机制知之甚少。随着组学技术的引入,诸如第三代测序和单细胞水平RNA测序、双向电泳、液相色谱和质谱等新颖且易于使用的技术,我们对间日疟原虫的遗传学、转录本和蛋白质的理解逐渐提高。本文旨在通过基因组学、转录组学和蛋白质组学对间日疟原虫的侵袭机制进行深入研究,并阐明多组学综合研究的重要性。
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引用次数: 1
Paleoanthropology of cognition: an overview on Hominins brain evolution. 古人类认知学:古人类大脑进化综述。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.92
Jean-Jacques Hublin, Jean-Pierre Changeux

Recent advances in neurobiology, paleontology, and paleogenetics allow us to associate changes in brain size and organization with three main "moments" of increased behavioral complexity and, more speculatively, language development. First, Australopiths display a significant increase in brain size relative to the great apes and an incipient extension of postnatal brain development. However, their cortical organization remains essentially similar to that of apes. Second, over the last 2 My, with two notable exceptions, brain size increases dramatically, partly in relation to changes in body size. Differential enlargements and reorganizations of cortical areas lay the foundation for the "language-ready" brain and cumulative culture of later Homo species. Third, in Homo sapiens, brain size remains fairly stable over the last 300,000 years but an important cerebral reorganization takes place. It affects the frontal and temporal lobes, the parietal areas and the cerebellum and resulted in a more globular shape of the brain. These changes are associated, among others, with an increased development of long-distance-horizontal-connections. A few regulatory genetic events took place in the course of this hominization process with, in particular, enhanced neuronal proliferation and global brain connectivity.

神经生物学、古生物学和古遗传学的最新进展使我们能够将大脑大小和组织的变化与行为复杂性增加的三个主要“时刻”以及更有推测性的语言发展联系起来。首先,与类人猿相比,南方古猿的大脑尺寸明显增大,并且在出生后大脑发育开始扩展。然而,它们的皮质组织基本上与类人猿相似。其次,在过去的2000年里,除了两个值得注意的例外,大脑的大小急剧增加,部分与身体大小的变化有关。皮层区域的差异扩大和重组为后来的人类物种的“语言准备”大脑和累积文化奠定了基础。第三,智人的大脑大小在过去30万年里保持相当稳定,但发生了重要的大脑重组。它会影响额叶、颞叶、顶叶和小脑,导致大脑呈球状。这些变化与长距离水平连接的发展有关。在这一人源化过程中发生了一些调控遗传事件,特别是神经元增殖和全球大脑连接的增强。
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引用次数: 2
Restored vision-augmented vision: arguments for a cybernetic vision. 恢复视觉-增强视觉:对控制论视觉的论证。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.102
Jean-Louis de Bougrenet de la Tocnaye

In this paper, we present some thoughts about the recent developments, made possible by technological advances and miniaturisation of connected visual prostheses, linked to the visual system, operating at different level of this one, on the retina as well as in the visual cortex. While these objects represent a great hope for people with impaired vision to recover partial vision, we show how this technology could also act on the functional vision of well sighted persons to improve or increase their visual performance. In addition to the impact on our cognitive and attentional mechanisms, such an operation when it originates outside the natural real visual field (e.g. cybernetics) raises a number of questions about the development and use of such implants or prostheses in the future.

在本文中,我们提出了一些关于最近发展的想法,这些发展是由技术进步和连接视觉假体的小型化所实现的,这些假体与视觉系统相连,在视网膜和视觉皮层的不同层次上运行。虽然这些物体为视力受损的人恢复部分视力带来了很大的希望,但我们展示了这项技术如何也能作用于视力良好的人的功能性视力,以改善或提高他们的视觉表现。除了对我们的认知和注意力机制的影响之外,当这种手术发生在自然真实视野之外(例如控制论)时,就会提出许多关于未来这种植入物或假体的发展和使用的问题。
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引用次数: 0
Divide and connect: divorce by mutual consent, keeping in touch by desideratum. 分而联系:双方同意离婚,保持联系。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.79
Emmanuelle M Bayer

Cell division is fundamental for living organisms, sustaining their growth and development. During cell division a single mother cell will duplicate its genome and organelles, and give rise to two independent entities that will eventually split apart in a tightly regulated process called abscission or the final-cut. In multicellular organisms, newly born daughter cells split apart while they simultaneously need to maintain contact for intercellular communication. In this mini-review, I discuss this fascinating paradox of how cells across kingdoms combine the need to divide with the need to connect.

细胞分裂是生物体生长发育的基础。在细胞分裂过程中,单个母细胞会复制其基因组和细胞器,并产生两个独立的实体,最终在一个被称为脱落或最终切割的严格调控过程中分裂。在多细胞生物中,新生的子细胞在分裂的同时需要保持细胞间的联系。在这篇简短的回顾中,我将讨论这个有趣的悖论,即不同领域的细胞是如何将分裂的需要与连接的需要结合起来的。
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引用次数: 0
Light-driven processes: key players of the functional biodiversity in microalgae. 光驱动过程:微藻功能生物多样性的关键参与者。
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2022-12-08 DOI: 10.5802/crbiol.80
Angela Falciatore, Benjamin Bailleul, Alix Boulouis, Jean-Pierre Bouly, Sandrine Bujaldon, Soizic Cheminant-Navarro, Yves Choquet, Catherine de Vitry, Stephan Eberhard, Marianne Jaubert, Richard Kuras, Ingrid Lafontaine, Sophie Landier, Julien Selles, Olivier Vallon, Katia Wostrikoff

Microalgae are prominent aquatic organisms, responsible for about half of the photosynthetic activity on Earth. Over the past two decades, breakthroughs in genomics and ecosystem biology, as well as the development of genetic resources in model species, have redrawn the boundaries of our knowledge on the relevance of these microbes in global ecosystems. However, considering their vast biodiversity and complex evolutionary history, our comprehension of algal biology remains limited. As algae rely on light, both as their main source of energy and for information about their environment, we focus here on photosynthesis, photoperception, and chloroplast biogenesis in the green alga Chlamydomonas reinhardtii and marine diatoms. We describe how the studies of light-driven processes are key to assessing functional biodiversity in evolutionary distant microalgae. We also emphasize that integration of laboratory and environmental studies, and dialogues between different scientific communities are both timely and essential to understand the life of phototrophs in complex ecosystems and to properly assess the consequences of environmental changes on aquatic environments globally.

微藻是一种重要的水生生物,约占地球上光合作用活动的一半。在过去的二十年中,基因组学和生态系统生物学的突破,以及模式物种遗传资源的发展,重新划定了我们对这些微生物在全球生态系统中的相关性的认识界限。然而,考虑到它们巨大的生物多样性和复杂的进化史,我们对藻类生物学的理解仍然有限。由于藻类依赖光作为其主要的能量来源和获取环境信息,我们在这里重点介绍了莱茵衣藻和海洋硅藻的光合作用、光感知和叶绿体生物发生。我们描述了光驱动过程的研究如何成为评估进化远端微藻功能生物多样性的关键。我们还强调,整合实验室和环境研究,以及不同科学界之间的对话,对于了解复杂生态系统中光养生物的生活,以及正确评估环境变化对全球水生环境的影响是及时和必要的。
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引用次数: 3
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Comptes Rendus Biologies
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