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Operational ecoforecasting for coral reefs using artificial intelligence and integrated near real-time environmental data 利用人工智能和综合近实时环境数据对珊瑚礁进行业务生态预报
IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2022.0012
L. Gramer, Madison Soden, J. Hendee
A synthesis of information products about environmental stressors provided in near real-time can serve environmental managers who seek to act decisively before stressors become unmanageable. We have created ecological forecasts, i.e., ecoforecasts, based on input from a variety of environmental sensors that report in near real-time, and we subsequently send those ecoforecasts to environmental managers. The application behind these ecoforecasts is Python-based software that uses an artificial intelligence (AI) inference engine called an expert system. The National Oceanic and Atmospheric Administration (NOAA) Environmental Information Synthesizer (NEIS), formerly the Environmental Information Synthesizer for Expert Systems (EISES), has been developed over two decades to meet the needs of environmental managers and scientists. NEIS integrates environmental data from multiple sources, including in situ and satellite sensors. The application produces ecoforecasts designed to identify environmental conditions conducive to mass coral bleaching and bleaching of specific coral species, as well as other marine environmental events such as algal blooms. This study evaluates the efficacy of coral bleaching ecoforecasts generated by NEIS for the Florida reef tract covering the years 2005–2017.
近乎实时提供的关于环境压力源的信息产品的综合可以为环境管理者提供帮助,他们可以在压力源变得无法控制之前采取果断行动。我们已经创建了生态预测,即生态预测,基于各种环境传感器的输入,这些传感器几乎是实时报告的,然后我们将这些生态预测发送给环境管理者。这些生态预测背后的应用程序是基于python的软件,它使用人工智能(AI)推理引擎,称为专家系统。美国国家海洋和大气管理局(NOAA)环境信息综合系统(NEIS),前身为专家系统环境信息综合系统(EISES),经过20多年的发展,满足了环境管理人员和科学家的需求。NEIS集成了来自多个来源的环境数据,包括现场和卫星传感器。该应用程序生成生态预报,旨在识别有利于大规模珊瑚白化和特定珊瑚品种白化的环境条件,以及其他海洋环境事件,如藻华。本研究评估了NEIS对2005-2017年佛罗里达珊瑚礁区珊瑚白化生态预测的有效性。
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引用次数: 0
Habitat associations and threat vulnerabilities of seahorses and pipefishes (Syngnathidae) in Biscayne National Park, Florida, USA 美国佛罗里达州比斯坎国家公园海马和管鱼的生境关联及威胁脆弱性
IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2022.0067
E. Stump, J. Rosenfeld, Acj Vincent
Habitat loss is a primary threat to seahorses, pipefishes, and their relatives (family Syngnathidae) globally. Conservation intervention is difficult or ineffective when species lack critical habitat information. To better understand the habitat associations of syngnathids we conducted underwater visual surveys of 79 sites in three habitat categories (Reef, Continuous, and Discontinuous Submerged Rooted Vegetation) in Biscayne National Park (BNP), a coastal Marine Protected Area (MPA) in southeastern Florida. We recorded nine syngnathid species in our surveys; presence/absence data was analyzed alongside a suite of abiotic and biotic variables. Nonparametric statistical tests indicated that syngnathids were significantly more abundant inside Biscayne Bay; we did not detect any syngnathids at reef sites despite reef-associated species being previously reported in BNP. Additional analyses indicated that sites where syngnathids were present were characterized by fine sediment, reduced horizontal visibility, high seagrass coverage, and low coverage of sessile benthic invertebrates and reef-associated turf algae. The most important predictor of syngnathid presence was a predominance of fine sediment—an indicator of low-velocity hydrodynamic conditions—and seagrass coverage at occupied sites was nearly double that of unoccupied sites. Variation in habitat use among the three most abundant sympatric syngnathids (Hippocampus zosterae, Syngnathus scovelli, and Syngnathus floridae) indicates niche partitioning based on salinity, local hydrodynamic regime, and seagrass coverage. Our study points to the value of protecting sheltered seagrass beds; heightened vulnerability habitat change—driven by watershed development, impacts from fisheries, recreation and tourism, and climate change—necessitates coordinated management of land use outside of the protected area.
栖息地丧失是全球海马、管鱼及其近亲(管鱼科)的主要威胁。当物种缺乏关键的栖息地信息时,保护干预是困难的或无效的。为了更好地了解合颌纲动物的栖息地关系,我们对佛罗里达州东南部沿海海洋保护区比斯坎国家公园(Biscayne National Park,简称BNP)的79个地点进行了水下目视调查。我们在调查中记录了9种合颌鱼;存在/不存在数据与一套非生物和生物变量一起进行分析。非参数统计检验表明,合胞虫在比斯坎湾内的丰度明显更高;尽管之前在BNP报道过与珊瑚礁相关的物种,但我们没有在珊瑚礁遗址中发现任何合鱼。其他分析表明,合胞藻存在的地点具有沉积物细,水平能见度低,海草覆盖率高,无底栖无脊椎动物和珊瑚礁相关草坪藻类覆盖率低的特征。合胞藻存在的最重要的预测因子是细沉积物的优势——一种低速水动力条件的指标——海草覆盖在被占领的地点几乎是未被占领地点的两倍。三种最丰富的同域合颌纲(海马体、褐尾合颌和佛罗里达合颌)栖息地利用的变化表明,生态位分配基于盐度、当地水动力状况和海草覆盖。我们的研究指出了保护有遮蔽的海草床的价值;受流域开发、渔业、休闲和旅游业的影响以及气候变化的驱动,脆弱性加剧的栖息地变化需要对保护区以外的土地利用进行协调管理。
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引用次数: 0
Diurnal sheltering behavior of hatchery-propagated long-spined urchins (Diadema antillarum): a re-examination following husbandry refinements 孵化场繁殖的长棘海胆(Diadema antillarum)的日间庇护行为:饲养改良后的重新检查
IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2022.0054
W. Sharp, G. Delgado, Aaron R. Pilnick, Joshua T. Patterson
The functional loss of herbivory on Caribbean coral reefs following an epizootic-driven die-off of the long-spined urchin (Diadema antillarum) in the 1980s and its lack of recovery has inspired efforts to re-establish an ecologically viable population throughout the region. An area of focus is to develop scalable methods for producing D. antillarum through aquaculture from gametes for release onto coral reefs. We had earlier observed that aquaculture-produced D. antillarum lacked the strong diurnal sheltering behavior exhibited by wild individuals. Based upon those findings, subsequent cohorts of aquaculture-produced individuals were therefore maintained under a natural diurnal cycle of UV-filtered sunlight and provided ample access to structure that mimicked its natural shelter. An examination of the sheltering behavior of D. antillarum from one of these cohorts found the pronounced diurnal sheltering behavior typical of wild individuals. This observation underscores the potential that the behavioral deficit observed in earlier hatchery-propagated D. antillarum can be mediated and ecologically functional individuals can be produced through this aquaculture process.
20世纪80年代,由于动物流行病导致长刺海胆(Diadema antillarum)死亡,加勒比珊瑚礁的食草动物功能丧失,而且缺乏恢复,这激发了在整个地区重新建立生态上可行的种群的努力。一个重点领域是开发可扩展的方法,通过水产养殖将配子释放到珊瑚礁上生产反尖藻。我们早前观察到,水产养殖产生的抗斑蝶缺乏野生个体所表现出的强烈的日间庇护行为。基于这些发现,水产养殖个体的后续群体因此被维持在一个自然的紫外线过滤阳光的昼夜循环中,并提供充足的机会进入模仿其自然遮蔽的结构。对来自其中一个群体的D. antillarum的庇护行为的检查发现了野生个体典型的明显的日间庇护行为。这一观察结果强调了在早期孵化场繁殖中观察到的行为缺陷可以被介导,并且可以通过这一养殖过程产生具有生态功能的个体。
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引用次数: 2
Residency and fine-scale habitat use of juvenile goliath grouper (Epinephelus itajara) in a mangrove nursery 歌利亚石斑鱼幼鱼在红树林苗圃的居住和精细尺度生境利用
IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2022.0061
Jonathan R. Rodemann, W. R. James, J. Rehage, H. Baktoft, Sophia V. Costa, R. D. Ellis, Lizbeth Gonzalez, Rolando Santos Corujo
The Atlantic goliath grouper (Epinephelus itajara) is the largest grouper species in the Atlantic and exhibits high site fidelity and limited range of movement. By 1990, the goliath grouper population in US waters had declined approximately 95% relative to unfished levels, leading to a harvest ban in 1990. Since then, the south Florida population has grown but the magnitude of recovery remains unknown due to uncertainties about life history characteristics. However, despite these unknowns, the state of Florida approved a limited recreational harvest of goliath grouper. In 2021, fine-scale habitat use of three juvenile goliath grouper was investigated using acoustic telemetry and a positioning solver. All three individuals exhibited high site fidelity as well as a diel habitat use pattern, utilizing seagrass habitat during the night and mangrove habitat during the day. Fine-scale acoustic telemetry provides insight into not only habitat use, but broader habitat preferences as well. This study illustrates the need to consider deep seagrass-dominated channels lined with red mangroves when protecting juvenile goliath grouper populations within Florida Bay, especially as the population is opened to harvest.
大西洋歌利亚石斑鱼(Epinephelus itajara)是大西洋最大的石斑鱼物种,具有高度的地点保真度和有限的活动范围。到1990年,美国水域的歌利亚石斑鱼数量相对于未捕捞的水平下降了大约95%,导致1990年禁止捕捞。从那时起,南佛罗里达的种群数量有所增长,但由于生命史特征的不确定性,恢复的幅度仍然未知。然而,尽管存在这些未知因素,佛罗里达州还是批准了对歌利亚石斑鱼进行有限的娱乐捕捞。2021年,利用声波遥测技术和定位求解器,研究了三只幼歌利亚石斑鱼的精细尺度栖息地使用情况。3个个体均表现出较高的立地保真度,夜间利用海草生境,白天利用红树林生境。精细尺度的声波遥测技术不仅可以深入了解栖息地的使用情况,还可以了解更广泛的栖息地偏好。这项研究表明,在保护佛罗里达湾内的歌利亚石斑鱼幼鱼种群时,需要考虑以海草为主的深沟渠,沟渠两旁是红红树林,尤其是在该种群开放捕捞的时候。
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引用次数: 1
Host density and anthropogenic stress are drivers of variability in dark spot disease in Siderastrea siderea across the Florida Reef Tract 宿主密度和人为压力是佛罗里达珊瑚礁区Siderastrea siderea黑斑病变异的驱动因素
IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2022.0063
G. Aeby, Gareth J. Williams, D. Whitall, A. Davies, Elizabeth Fromuth, B. Walker
Dark spot disease (DSD) was first reported within Florida’s coral reefs in the 1990s but factors affecting its spatial distribution have not been well studied. We used a 14-year (2005–2019) coral monitoring data set, utilizing 2242 surveys collected along Florida’s coral reefs (about 530 linear km) to explore the spatial and temporal patterns of DSD occurrence. We built predictive statistical models to test for correlations between a suite of environmental and human impact factors and the occurrence of DSD in the reef coral, Siderastrea siderea. DSD in S. siderea is a chronic disease which occurred in all 14 years of the study. Annual DSD prevalence ranged from 0.45% to 4.4% and the proportion of survey sites that had DSD ranged from 4.8% to 30.9%. During the study period, DSD became more widespread across Florida’s coral reefs and affected a higher proportion of S. siderea populations. Spatial variations in DSD correlated with environmental and human factors which together explained 64.4% of the underlying variability. The most influential factors were concentration of silica in the surface waters (a proxy for freshwater input), the total number of coral hosts, and distance to septic areas. DSD occurred in all regions, but the highest cumulative prevalence occurred in the upper Keys on reefs around major urban centers with links to coastal water discharges. Our results support the hypothesis that coastal water quality is a key component of DSD disease dynamics in Florida and provides motivation for addressing land–sea connections to ameliorate disease occurrence in the region.
黑斑病(DSD)于20世纪90年代首次在佛罗里达州的珊瑚礁中被报道,但影响其空间分布的因素尚未得到很好的研究。我们使用了14年(2005-2019)的珊瑚监测数据集,利用沿佛罗里达州珊瑚礁(约530线性公里)收集的2242项调查来探索DSD发生的时空模式。我们建立了预测统计模型来测试一系列环境和人类影响因素与珊瑚礁珊瑚(Siderastrea siderea)中DSD发生之间的相关性。葡萄球菌的DSD是一种慢性疾病,在所有14年的研究中都有发生。年患病率介乎0.45%至4.4%,而有患病的调查地点的比例介乎4.8%至30.9%。在研究期间,DSD在佛罗里达州的珊瑚礁中变得更加普遍,并且影响了更高比例的S. sideria种群。DSD的空间变异与环境和人为因素相关,两者共同解释了64.4%的潜在变异。影响最大的因素是地表水中二氧化硅的浓度(代表淡水输入)、珊瑚宿主总数和到化粪池的距离。DSD发生在所有地区,但最高的累积流行率发生在主要城市中心周围的珊瑚礁上,与沿海水排放有关。我们的研究结果支持了沿海水质是佛罗里达州DSD疾病动态的关键组成部分的假设,并为解决陆海联系以改善该地区的疾病发生提供了动力。
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引用次数: 0
Tropicalization alert: new species of mat-forming zoantharian (Zoanthus pulchellus) arrives on Madeira Island (NE Atlantic) 热带化警报:形成垫地的斑蝥新种抵达马德拉岛(大西洋东北部)
IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2023.0048
Rodrigo Pires da Silva, R. Triay-Portella, C. López, João Gama Monteiro, J. Canning‐Clode
The first record of a mat-forming zoantharian species, Zoanthus pulchellus (Duchassaing and Michelotti, 1860), in Madeira Island, Portugal (NE Atlantic).
在葡萄牙马德拉岛(东北大西洋)首次发现一种成垫动物,Zoanthus pulchellus (Duchassaing and Michelotti, 1860)。
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引用次数: 0
A quantitative assessment of the status of reef fish communities from a large-scale probability survey in southern Florida 从佛罗里达南部大规模概率调查中对珊瑚鱼群落状况的定量评估
4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2023.0020
Laura Jay W Grove, Steven G Smith, Jeremiah Blondeau, Jerald S Ault
Numerous reef fish monitoring programs worldwide produce the data necessary to describe the status and trends of coral reefs; however, quantitative description of status at ecosystem scales has been challenging. Our goal was to use southern Florida’s coral reefs as the template to complete a holistic, ecosystem-scale evaluation of reef fish community status using large-scale diver surveys that sampled across a spatial gradient of human urbanization, exploitation, and fishery protection. Key aspects of the analysis were: (i) identification of a low human impact reference area as the basis for quantifying resource condition; (ii) selection of indicator variables that helped discriminate two classes of impacts: habitat quality and fishing; (iii) application of estimation methods that facilitated distinguishing anthropogenic impacts from inherent productivity of different habitats; and (iv) use of a sustainability benchmark to gauge the resource condition of the reference area. The reference-centering analysis approach reduced reliance on qualitative judgements by an expert panel and outputted results on a scale that was informative and could be easily interpreted by a variety of audiences. Our findings identified habitat quality issues in the most urbanized region, southeast Florida, and pervasive fishing issues throughout the ecosystem, including the remote Dry Tortugas region.
世界各地的许多珊瑚鱼监测项目提供了描述珊瑚礁状况和趋势所需的数据;然而,在生态系统尺度上对状态的定量描述一直具有挑战性。我们的目标是使用佛罗里达州南部的珊瑚礁作为模板,通过大规模的潜水员调查,在人类城市化、开发和渔业保护的空间梯度中取样,完成对珊瑚礁鱼类群落状况的整体生态系统规模评估。分析的主要方面是:(i)确定一个低人类影响的参考区,作为量化资源状况的基础;选择有助于区分两类影响的指标变量:生境质量和捕鱼;(iii)采用有助于区分不同生境的人为影响与固有生产力的估计方法;(iv)使用可持续性基准来衡量参考地区的资源状况。以参考为中心的分析方法减少了对专家小组定性判断的依赖,并以信息量大、易于各种受众解释的规模输出结果。我们的研究结果确定了佛罗里达州东南部城市化程度最高的地区的栖息地质量问题,以及整个生态系统中普遍存在的捕鱼问题,包括偏远的干托尔图加斯地区。
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引用次数: 0
Giant mobile coralliths from the Florida Keys, USA 来自美国佛罗里达群岛的巨型移动珊瑚
4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2023.0051
William F Precht, Mark R Patterson, Peter W Glynn
Coralliths are spherical, free-living (motile), scleractinian colonies inhabiting present day and ancient coral reefs. They form by the coral rolling on the seabed which can occur through biological and/or physical processes. While diving and snorkeling in nearshore environments in the upper Florida Keys, we observed hundreds of coralliths of varying sizes and species. This included colonies of Porites astreoides, Siderastrea radians, and Solenastrea bournoni . The largest coralliths we observed were all S. bournoni and ranged between 0.5 and 1.4 m in diameter. The exceptionally large colonies identified (>1 m) may be the largest and oldest spherical coralliths described to date. Relatively frequent movement of a corallith is key to their formation as all colony surfaces must be exposed to sunlight and currents periodically to maintain their spherical shape. Intuitively, the larger a corallith grows, the stronger the current energy must be to initiate movement. Considering the shallow depth of the corallith habitat and the high frequency of tropical storms and hurricanes impacting south Florida, we hypothesized that the forces generated by shoaling, breaking storm waves would be sufficient to cause the formation of these giant coralliths. Calculations based on hydrodynamic forces and field observations after the passage of a storm support the efficacy of storm-generated waves and surge to move and roll these giant coralliths. The tropical storm/hurricane return time where we found these large colonies in the Florida Keys is one in every seven years. This return time is apparently frequent enough to maintain their spherical morphology and assist in the formation of these giant coralliths.
珊瑚虫是球形的、自由生活的(可移动的)、硬核动物群落,生活在现在和古代的珊瑚礁中。它们是由珊瑚在海床上滚动形成的,这可以通过生物和/或物理过程发生。在佛罗里达群岛上的近岸环境中潜水和浮潜时,我们观察到了数百种不同大小和种类的珊瑚。这包括了小行星、弧度星和波诺尼星的殖民地。我们观察到的最大珊瑚都是S. bournoni,直径在0.5 ~ 1.4 m之间。发现的特别大的珊瑚群(1米)可能是迄今为止描述的最大和最古老的球形珊瑚。珊瑚体相对频繁的运动是它们形成的关键,因为所有的珊瑚群表面必须周期性地暴露在阳光和水流中,以保持它们的球形。直观地说,珊瑚体越大,启动运动的电流能量就必须越强。考虑到珊瑚栖息地的深度较浅,热带风暴和飓风对南佛罗里达的影响频率很高,我们假设,浅滩和风暴波浪产生的力量足以导致这些巨大珊瑚的形成。基于水动力的计算和风暴通过后的现场观测支持了风暴产生的波浪和浪涌移动和滚动这些巨大珊瑚的功效。我们在佛罗里达群岛发现这些大型群落的热带风暴/飓风回归时间是每七年一次。这种返回时间显然足够频繁,足以维持它们的球形形态,并有助于这些巨大珊瑚的形成。
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引用次数: 0
Morphological description and molecular characterization of Gnathia jimmybuffetti sp. nov. (Crustacea, Isopoda, Gnathiidae): the first new gnathiid in 100 years from the Floridian ecoregion (甲壳纲等足目Gnathia jimmybuffetti sp. 11 .):佛罗里达地区100年来首次发现的新Gnathia
IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2023.0040
A. Erasmus, K. A. Hadfield, P. Sikkel, Nico J. Smit
Gnathia jimmybuffetti sp. nov. is described from the Florida Keys. Morphological characterization of the male, female, and juvenile, as well as the life cycle development of the female is examined. The male of this new species is distinguished from other species from the Tropical Northwestern Atlantic marine province by the slightly produced frontal margin; absent mediofrontal process; single, strong, conical superior frontolateral process, with 2 pairs of long simple setae; and rounded inferior frontolateral process, the weak distally curved mandible with weakly convex dentate blade. In addition, molecular characterization for three life stages, (males, females, and praniza), is provided, as well as evidence for linking host DNA to juvenile stages. This paper contributes to our understanding of the gnathiid biodiversity of the Tropical Atlantic realm, specifically the Floridian ecoregion. Furthermore, this paper validates the methods of extracting and identifying host DNA from the gnathiid blood meal.
来自佛罗里达群岛的Gnathia jimmybuffetti。形态特征的雄性,雌性,和少年,以及生命周期发育的雌性进行了检查。这个新种的雄性与来自热带西北大西洋海洋省的其他种类的区别在于它的额缘略生;中额突缺失;单根,强壮,圆锥形的上正面突起,具2对长单刚毛;和圆形下额外侧突,弱远端弯曲下颌骨弱凸齿叶片。此外,提供了三个生命阶段(雄性、雌性和雌性)的分子特征,以及将宿主DNA与幼年阶段联系起来的证据。这篇论文有助于我们对热带大西洋地区,特别是佛罗里达生态区的啮齿目生物多样性的理解。此外,本文还验证了从牙颌目血粉中提取和鉴定宿主DNA的方法。
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引用次数: 0
Morphological and ultrastructural description of Nematopsis spisula sp. nov. (Apicomplexa) inhabiting Spisula solida (Bivalvia) on the Portuguese Atlantic coast 葡萄牙大西洋沿岸栖息于双壳目单穗目spisula sp. 11 .(尖复合体目)的形态和超微结构描述
4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-01-01 DOI: 10.5343/bms.2023.0030
Carlos Azevedo, Sónia Rocha, Graça Casal
The present study describes the morphology and ultrastructure of the oocysts of a new species of the genus Nematopsis infecting different organs of the surf clam Spisula solida (Linnaeus, 1758) (Mollusca, Bivalvia) on the Portuguese Atlantic coast. Each oocyst (14.3 ± 0.2 µm long, and 10.3 ± 0.3 µm wide) contains a single uninucleate vermiform sporozoite. Single and grouped oocysts enveloped by a parasitophorous vacuole occur enclosed within host phagocytes externally, surrounded by a complex reticular ring-like structure formed by juxtaposed and parallel cysterns containing numerous small electron dense masses regularly distributed in their lumen. More advanced stages of infection show phagocytic degradation characterized by cytoplasmic vacuolarization and rupture of the parasitophorous vacuole membrane. Morphological and ultrastructural observations combined with host reaction specificity supports the erection of a new species, namely Nematopsis spisula sp. nov.
本研究描述了葡萄牙大西洋沿岸一种新的线虫属物种的卵囊的形态和超微结构,这些卵囊感染了海蛤Spisula solida (Linnaeus, 1758)(软体动物,Bivalvia)的不同器官。每个卵囊(长14.3±0.2µm,宽10.3±0.3µm)含有一个单核蚓形孢子子。单个和成组的卵囊被寄生液泡包裹在宿主吞噬细胞内,外部被一个复杂的网状环状结构包围,该结构由并列和平行的卵囊组成,卵囊内有规律地分布着许多小的电子致密团块。感染的晚期表现为吞噬降解,其特征是细胞质空泡化和寄生液泡膜破裂。形态学和超微结构观察结合宿主反应特异性支持一个新种的勃起,即Nematopsis spisula sp. nov。
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引用次数: 0
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Bulletin of Marine Science
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