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A novel distance that reduces information loss in continuous characters with few observations 一种新颖的距离,可以减少连续字符的信息损失
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1250
Gerardo A. Lo Valvo, Oscar E. R. Lehmann, Diego Balseiro
The calculation of pairwise distances is a fundamental step in many statistical analyses in biology and paleontology. The most commonly used distances work with a single observation per object and character, but there are scenarios where multiple observations are available per object. In these situations, the information for the character spans an interval, and pairs of objects can have overlapping intervals, which further complicates the distance calculation. Some coefficients can deal with this wealth of information but are either too coarse to provide detailed results or too computationally demanding for even moderately large data sets. Here, we present the Distance Between Intervals (DBI) as a novel semi-metric distance that can accommodate both singular and multiple observations per object by analyzing them as intervals. The DBI ranges from 0 to 1 when there is an overlap between the objects and from 1 to infinity when there is no overlap between them. It is easy to calculate and can be applied to a wide variety of data types. Both simulated and empirical test cases show that the DBI correctly ranks pairs of objects by their level of overlap and non-overlap, while other distances struggle to do it. Therefore, the DBI can provide a finer level of definition than other available distances for empirical data sets, while generally agreeing with the broad results they provide. An implementation of DBI is provided for the R program-ming language.
两两距离的计算是生物学和古生物学中许多统计分析的基本步骤。最常用的距离适用于每个对象和角色的单个观察,但也存在每个对象可用多个观察的场景。在这些情况下,角色的信息跨越一个区间,而成对的对象可能有重叠的区间,这进一步使距离计算变得复杂。有些系数可以处理这些丰富的信息,但要么过于粗糙,无法提供详细的结果,要么对于中等规模的数据集来说计算要求太高。在这里,我们提出了间隔距离(DBI)作为一种新的半度量距离,它可以通过将单个和多个观测值分析为间隔来容纳每个对象。当对象之间有重叠时,DBI的取值范围为0 ~ 1;当对象之间没有重叠时,DBI的取值范围为1 ~∞。它易于计算,并且可以应用于各种数据类型。模拟和经验测试用例都表明,DBI根据对象的重叠和非重叠程度正确地对它们进行排序,而其他距离则很难做到这一点。因此,DBI可以为经验数据集提供比其他可用距离更精细的定义,同时通常与它们提供的广泛结果一致。为R编程语言提供了DBI的实现。
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引用次数: 0
New look at Concavicaris woodfordi (Euarthropoda: Pancrustacea?) using micro-computed tomography 利用微型计算机断层扫描技术对木蛙进行新的观察(真节肢动物门:Pancrustacea?)
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1218
Thomas Laville, T. Hegna, M. Forel, S. Darroch, S. Charbonnier
Known from at least the Silurian to the Cretaceous, Thylacocephala is an enigmatic fossil euarthropod ingroup, often allied with Pancrustacea. Previous studies show that thylacocephalans are characterized by a folded protective shield, hypertrophied compound eyes, three pairs of raptorial appendages, a posterior trunk comprised of eight to 22 segments bearing appendages, and eight pairs of gills. Despite this knowledge of their anatomy, many questions remain, especially surrounding the anatomy of Paleozoic representatives. The Upper Devonian Woodford Shale (upper Famennian, Oklahoma, USA) has yielded several fossil euarthropods, including two species of Thylacocephala: Concavicaris elytroides and Concavicaris woodfordi. Here, we use micro-computed Xray tomography to re-explore the anatomy of the holotype of C. woodfordi, illustrating fine details of the shield structure, of the circulatory, digestive and reproductive systems, and of the appendages. A marginal fold of the shield as well as an inner layer are described for the first time in a thylacocephalan. Concavicaris woodfordi shares similarities with Concavicaris submarinus, another Famennian species, including the morphology of the shield and the internal anatomy. It also displays a similar organisation as Mesozoic taxa, such as Dollocaris ingens. All of this provides important information that will be crucial to reconstruct the evolution and the affinities of Thylacocephala. Thomas Laville. Muséum national d’Histoire naturelle, Centre de Recherche en Paléontologie-Paris (UMR7207), MNHN-Sorbonne Université-CNRS, Paris, France and Biogéosciences, UMR 6282CNRS, Université Bourgogne Franche-Comté, EPHE, Dijon, France. Corresponding author. thomas.laville@ecomail.fr Thomas A. Hegna. Department of Geology and Environmental Science, State University of New York at Fredonia, New York, USA thomas.hegna@fredonia.edu Marie-Béatrice Forel. Muséum national d’Histoire naturelle, Centre de Recherche en Paléontologie-Paris (UMR7207), MNHN-Sorbonne Université-CNRS, Paris, France. marie-beatrice.forel@mnhn.fr Simon Darroch. Department of Earth and Environmental Sciences, Vanderbilt University, Nashville, LAVILLE ET AL.: NEW LOOK AT CONCAVICARIS WOODFORDI 2 Tennessee, USA. simon.a.darroch@vanderbilt.edu Sylvain Charbonnier. Muséum national d’Histoire naturelle, Centre de Recherche en Paléontologie-Paris (UMR7207), MNHN-Sorbonne Université-CNRS, Paris, France. sylvain.charbonnier@mnhn.fr
至少从志留纪到白垩纪,Thylacocephala是一种神秘的真节肢动物化石,通常与Pancrustacea联系在一起。先前的研究表明,袋头类动物的特征是:折叠的保护罩、肥大的复眼、三对猛禽附肢、由8至22个附肢组成的后躯干和八对鳃。尽管了解了它们的解剖结构,但许多问题仍然存在,特别是围绕古生代代表的解剖结构。美国俄克拉荷马州上泥盆统伍德福德页岩(上法门纪)出土了几种真节肢动物化石,其中包括两种袋头类:鞘翅类和伍德福德类。在这里,我们使用微型计算机x射线断层扫描重新探索C. woodfordi的全型解剖结构,说明了盾牌结构的精细细节,循环系统,消化系统和生殖系统,以及附体。本文首次在甲壳类动物中描述了盾状体的边缘褶皱和内层。woodfordi Concavicaris与famenia的另一种物种Concavicaris submarinus有相似之处,包括盾的形态和内部解剖结构。它还显示出与中生代分类群类似的组织结构,如Dollocaris ingens。所有这些都提供了重要的信息,这些信息对于重建头囊类动物的进化和亲缘关系至关重要。托马斯Laville。国家自然历史组织,巴黎帕尔萨姆·弗朗什-康普斯大学(UMR7207),法国巴黎索邦大学(mnn - sorbonne university),法国巴黎和生物化学组织(UMR 6282CNRS),法国第戎,勃艮第,弗朗什-康普斯大学(EPHE)相应的作者。thomas.laville@ecomail.fr Thomas A. Hegna。美国纽约州弗里多尼亚纽约州立大学地质与环境科学系thomas.hegna@fredonia.edu marie - bsamatrice Forel。国家自然历史组织,巴黎帕尔萨蒙大学(UMR7207),巴黎索邦大学(MNHN-Sorbonne university),法国巴黎。marie-beatrice.forel@mnhn.fr西蒙·达罗克。范德比尔特大学地球与环境科学系,纳什维尔,拉维尔等人:WOODFORDI 2田纳西州,美国。simon.a.darroch@vanderbilt.edu Sylvain Charbonnier。国家自然历史组织,巴黎帕尔萨蒙大学(UMR7207),巴黎索邦大学(MNHN-Sorbonne university),法国巴黎。sylvain.charbonnier@mnhn.fr
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引用次数: 1
A new approach to the systematics of Laeviprosopon (Brachyura: Homolidae), with remarks on molting process of the early brachyurans 文章题目短肢目:长肢目:Homolidae)系统分类学的新进展及早期短肢目的蜕皮过程
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1204
Natalia Starzyk, B. V. van Bakel, A. Klompmaker, G. Schweigert, René H. B. Fraaije
Our understanding of the molting process in the Jurassic brachyurans is very scarce because useful material is rare. New specimens from Poland and Germany, in addition to previously known specimens, let us further investigate the molting process. Specimens of Laeviprosopon laeve reveal characters not known before. On the dorsal carapace, molting lines are confirmed in three species of Laeviprosopon : the type species L. laeve , L. laculatum and L. fraasi . This brought questions about the systematic position of Laeviprosopon , which we here reassign to Homolidae within Homoloidea. Furthermore, two specimens ascribed previously to L. sublaeve are transferred to L. fraasi
由于有用的材料很少,我们对侏罗纪短爪龙的蜕皮过程的了解非常少。来自波兰和德国的新标本,加上以前已知的标本,让我们进一步研究蜕皮过程。Laeviprosopon laeve的标本显示了以前不知道的特征。在背甲壳上,有模式种L. laeve、L. laculatum和L. fraasi三种Laeviprosopon的蜕皮线。这就产生了关于Laeviprosopon的系统地位的问题,我们在此将其重新归入同门总科中的同门科。另外,有2个原属属的标本被转移到属属
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引用次数: 0
Middle Eocene cartilaginous fishes (Vertebrata: Chondrichthyes) of the Dnieper–Donets Basin, northern Ukraine 乌克兰北部第聂伯-顿涅茨盆地的中始新世软骨鱼(脊椎动物:软骨鱼目)
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1283
O. Kovalchuk, J. Kriwet, K. Shimada, T. Ryabokon, Z. Barkaszi, Anastasiia Dubikovska, G. Anfimova, S. Davydenko
Marine basins that existed in present-day Ukraine during the Eocene harboured various groups of cartilaginous and bony fishes, reptiles, aquatic birds, and marine mammals. Fish remains from Paleogene deposits of Kyiv and its vicinities were first collected and described by O.S. Rogovich in the mid-19th century. Here we have carried out a re-examination of chondrichthyan fossils from Rogovich’s collection and evaluated several later records, all of which were recovered from middle Eocene
始新世时期存在于今天乌克兰的海洋盆地中,栖息着各种软骨鱼和硬骨鱼、爬行动物、水鸟和海洋哺乳动物。19世纪中期,O.S. Rogovich首次收集并描述了基辅及其附近地区古近纪沉积物中的鱼类遗骸。在这里,我们对Rogovich收集的软骨鱼化石进行了重新检查,并评估了几个后来的记录,这些记录都是从始新世中期恢复的
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引用次数: 1
Biostratigraphy and biochronology of late Cenozoic North American rodent assemblages 晚新生代北美啮齿动物组合的生物地层学和生物年代学
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1303
Robert Martin, Thomas S. Kelly
Late Cenozoic rodent assemblages from western North America were added to a previous database limited to the central and eastern United States to develop a continental correlational system for the past 5 million years. Three hundred and twelve species representing 124 rodent assemblages were included, from which 12 Cenozoic Mammal Zones (CMZs) were constructed. Replacement chronologies for rodent assemblages based upon superposition, radiometric dates, paleomagnetic profiles, and evolutionary stages of dentitions from various depositional basins formed the skeleton for the chronological ordering of assemblages, and those lacking one or more information sources were sequenced based upon greatest concordance with available data. Arvicoline cricetids provided the most useful information for sequencing assemblages, followed by neotomine and sigmodontine cricetids and geomyids. The appearance of modern-sized cotton rats in CMZ 4, followed by the immigration of Allophaiomys across Beringia in CMZ 3, heralds the shift to the dominance of cotton rats and arhizodont voles in North American grassland ecosystems. No rapid bouts of significant turnover are associated with the beginning of the Pleistocene at 2.58 Ma (million years ago), but a pronounced turnover event was observed in the Meade Basin of southwestern Kansas immediately following the Huckleberry Ridge ash-fall at 2.07 Ma. Preliminary observations suggest two categories of rodent turnover; low-level background rotation determined by stochastic short-term regional and long-term global environmental change, and short-term turnover spikes mediated by catastrophic events such as volcanic eruptions.
来自北美西部的晚新生代啮齿动物组合被添加到先前仅限于美国中部和东部的数据库中,以开发过去500万年的大陆相关系统。共纳入124个鼠类组合312种,构建了12个新生代哺乳动物区(CMZs)。基于迭加、放射性测年、古地磁剖面和不同沉积盆地齿列演化阶段的啮齿动物组合替代年代学,构成了组合年代学排序的骨架,而缺乏一个或多个信息源的序列则根据与现有数据的最大一致性进行排序。为测序组合提供了最有用的信息,其次是新托明和西莫顿汀。在CMZ 4中出现了现代大小的棉鼠,随后在CMZ 3中Allophaiomys跨越白令陆桥的迁移,预示着北美草原生态系统中棉鼠和arhizo不田鼠的优势地位的转变。在2.58 Ma(百万年前)更新世开始时,并没有出现重大的快速更替,但在2.07 Ma哈克贝利岭灰烬坠落之后,在堪萨斯州西南部的米德盆地观测到一次明显的更替事件。初步观察表明,啮齿动物的更替分为两类;由随机短期区域和长期全球环境变化决定的低水平背景旋转,以及由火山爆发等灾难性事件介导的短期周转量峰值。
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引用次数: 0
Redescription of soft tissue preservation in the holotype of Scaphognathus crassirostris (Goldfuß, 1831) using reflectance transformation imaging 利用反射变换成像重新描述骨舟骨(Goldfuß, 1831)全型标本中软组织的保存
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1070
Nils Henkemeier, K. Jäger, M. Sander
The description of the holotype of the non-pterodactyloid pterosaur Scaphog-nathus crassirostris from the Upper Jurassic Solnhofen Formation by the German palaeontologist Georg August Goldfuß in 1831 was the basis for the first published scientific life reconstruction of a pterosaur. In the time since Goldfuß, the technologies used in imaging soft parts in fossils have advanced greatly, but despite its historical importance, the holotype of S. crassirostris has received relatively little attention, limiting comparisons to more recent pterosaurian soft part finds. In this study, reflectance transformation imaging (RTI) was used to investigate fine surface details of the S. cras-sirostris type specimen. The observations of Goldfuß concerning the existence of different preservational patterns of the hair-like integumentary structures (pycnofibres) in this specimen were confirmed. Individual pycnofibre types differ both in their position and frequency and may indicate variation in pycnofibre morphology across different body regions in the living animal. Pycnofibre types forming a ‘tuft’ or a ‘feather-like’ structure are similar to those of other pterosaur fossils from the southern German Sol-nhofen Formation and the northeastern Chinese Tiaojishan Formation. However, some types, such as ‘forked’ pycnofibre impressions, could be artefacts of taphonomic processes. This study provides further evidence for the similarity in the preservation of integumentary appendages and associated preservational patterns in pterosaurs across different localities, palaeoenvironments, stratigraphic ages
1831年,德国古生物学家Georg August Goldfuß对来自上侏罗统Solnhofen组的非翼手类翼龙Scaphog-nathus crassirostris的全型描述,为首次发表的翼龙生命重建奠定了基础。自Goldfuß以来,用于化石软部成像的技术已经取得了很大的进步,但尽管具有历史重要性,S. crassirostris的全模化石受到的关注相对较少,这限制了与最近发现的翼龙软部的比较。本研究采用反射变换成像(RTI)技术研究了S. cras-sirostris型标本的精细表面细节。Goldfuß关于在该标本中存在不同的毛发状被皮结构(pycnofibers)保存模式的观察得到了证实。个体碧萝丝的类型在位置和频率上都不同,这可能表明在活体动物的不同身体区域,碧萝丝的形态存在差异。形成“簇状”或“羽毛状”结构的翼龙纤维类型与德国南部Sol-nhofen组和中国东北部条集山组的其他翼龙化石相似。然而,有些类型,如“分叉”的纤维印痕,可能是埋藏过程的人工制品。本研究为不同地区、不同古环境、不同地层时代翼龙的外皮附属物保存模式的相似性提供了进一步的证据
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引用次数: 0
Description of contents of unopened bamboo corsets and crates from Quarry Ig/WJ of the Tendaguru locality (Late Jurassic, Tanzania, East Africa) as revealed by medical CT data and the potential of this data under paleontological and historical aspects 医学CT数据揭示了tenaguru地区(东非坦桑尼亚晚侏罗世)采石场Ig/WJ未开封的竹胸衣和板条箱的内容,以及这些数据在古生物学和历史方面的潜力
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1231
D. Schwarz, G. Fritsch, A. Issever, Thomas Hildebrandt
The German Tendaguru Expedition from 1909 to 1913 to Southern Tanzania (then the German colony Deutsch-Ostafrika) was one of the most successful field campaigns for fossil vertebrates. Forty still originally packed and unopened bamboo corsets and six wooden crates containing vertebrate fossils excavated at Quarry Ig/WJ in the Tend-aguru area are preserved at the Museum für Naturkunde Berlin. Studies of the containers with a medical CT scanner made it possible to visualize the packed fossil specimens, which had either a clay protection cover, were still in sediment, or were found as clusters of small vertebrae and tin cans filled with small bones. The majority of bones belong to the small ornithopod Dysalotosaurus, supplemented by a few remains of the thyreophoran dinosaur Kentrosaurus and sauropod dinosaurs. Criteria for the prioritization of preparation of the material are defined based on their paleonto-logical importance plus their historical value as evidence for an excavation campaign carried out under colonial conditions. Therefore, it is suggested that a few of the original containers be preserved in their original condition. This study provides a nonde-structive way to assess information about historical, unprepared fossil material, as well as virtual access to these containers. In its original preservation, the described whole suite of containers is historical evidence of the hard and substantial excavation work of many local people from the Tendaguru area, and it documents historical collection practices including colonial preparation and field practices at the Tendaguru fossil site.
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引用次数: 0
Late Pleistocene and Holocene pikas (Mammalia, Lagomorpha) from Europe and the validity of Ochotona spelaea: New insights based on mtDNA analysis 欧洲晚更新世和全新世鼠兔(哺乳类,鼠兔目)与鼠兔(Ochotona spelaea)的有效性:基于mtDNA分析的新见解
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1241
Emilia Rabiniak, L. Rekovets, J. Stewart, L. Dalén, N. Barton, T. Strzała, Z. Barkaszi, O. Kovalchuk
Pikas were among small mammals that inhabited mammoth steppes during the last glacial. The evolutionary history of ochotonids in Europe is relatively well studied, although the taxonomic status of many described forms remains ambiguous
鼠兔是最后一次冰河时期居住在猛犸草原上的小型哺乳动物之一。在欧洲,耳蜗类动物的进化史研究相对较好,尽管许多被描述的形式的分类地位仍然不明确
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引用次数: 3
Simulating our ability to accurately detect abrupt changes in assemblage-based paleoenvironmental proxies 模拟人类准确探测基于组合的古环境代用物突变的能力
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1282
C. Belanger, David W. Bapst
Resolving abrupt environmental changes in sedimentary records is critical to understanding environmental perturbations relevant on human timescales. The paleontological assemblage mixer (paleoAM) framework developed here simulates sedimentary records to measure the preservation potential of abrupt changes in assemblage-based faunal proxies while varying environmental background conditions, excursion magnitudes and durations, bioturbation, sedimentation rates, and sampling completeness. Using a record of fossil benthic foraminifera, we apply paleoAM to quantitatively determine how distinct from background conditions and how enduring an assemblage change must be to be accurately detected. At the high sedimentation rates of the case study, century-long low-oxygen events frequently have a high probability of being sampled and accurately detected, quantitatively estimated with simulations across varying sedimentation rates
解决沉积记录中的环境突变对于理解与人类时间尺度相关的环境扰动至关重要。本文开发的古生物组合混合框架模拟了沉积记录,以测量在不同环境背景条件、偏移幅度和持续时间、生物扰动、沉积速率和采样完整性的情况下,基于组合的动物代用物突变的保存潜力。使用底栖有孔虫化石记录,我们应用古am定量地确定与背景条件的区别,以及组合变化必须持续多久才能准确地检测到。在案例研究的高沉积速率下,长达一个世纪的低氧事件经常有很高的概率被采样和准确检测,并通过不同沉积速率的模拟进行定量估计
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引用次数: 0
Anchitheriomys buceei (Rodentia, Castoridae) from the Miocene of Texas and a review of the Miocene beavers from the Texas Coastal Plain, USA 德克萨斯州中新世河狸类(啮齿目,海狸科)及美国德克萨斯州海岸平原中新世河狸的研究进展
IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Pub Date : 2023-01-01 DOI: 10.26879/1236
S. May, Matthew Brown
The record of fossil beavers from Miocene age strata in the Texas Coastal Plain is sparse. The first occurrence of fossil beavers is in Arikareean age faunas. One fossil beaver specimen was reported from a Hemingfordian fauna near Navasota, TX. Both Monosaulax and Anchitheriomys are described here from multiple early Barstovian faunas including a new taxon, Anchitheriomys buceei. The taxon, A. buceei, was a relatively large beaver, similar to A. fluminis in size, and shares characters with both A. fluminis and A. nanus. The holotype of Anchitheriomys buceei is a partial skull and endocast that preserves key features of the orbital foramina and palatine. Referred specimens include a partial dentary, isolated cheek teeth, and two post-cranial elements. The co-occurrence of this taxon and a small beaver identified as Monosaulax sp. in early Barstovian faunas is coeval with the first occurrence of proboscideans along the Texas Coastal Plain. Beavers are unknown in late Barstovian and Clarendonian faunas, although rodent fossils are uncommon from these faunas in general. Most of the fossil beaver specimens were obtained in the early twentieth century by collectors affiliated with Dr. Mark Francis at Texas A&M University, or with the State-Wide Paleontologic-Mineralogic Survey in Texas and are curated at the Texas Vertebrate Paleontology Collections. Archival materials housed at that facility have been instrumental in unraveling the history of collection, the distribution of localities and the evolving understanding of Miocene vertebrate biostratigraphy on the Texas Coastal Plain. Steven R. May, Jackson School Museum of Earth History, The University of Texas at Austin, Austin, Texas 78758, USA. srmay@utexas.edu Matthew A. Brown, Jackson School Museum of Earth History, The University of Texas at Austin, Austin, Texas 78758, USA. matthewbrown@utexas.edu
在德克萨斯海岸平原中新世地层中发现的海狸化石很少。第一次发现海狸化石是在阿里卡利时代的动物群中。在德克萨斯州纳瓦索塔附近的一个海明福特动物群中报告了一个海狸化石标本。本文描述了来自多个早期巴斯托动物群的单爪类和近齐兽类,包括一个新的分类群——近齐兽类。该分类群a . buceei是一种相对较大的海狸,大小与a . fluuminis相似,并且与a . fluuminis和a . nanus具有相同的特征。隐头畸形全型为部分颅骨和内嵌,保留了眶孔和腭的主要特征。参考标本包括部分牙齿,分离的颊齿和两个颅后元素。在Barstovian早期动物群中,该分类群与一种被鉴定为Monosaulax sp.的小海狸的共存与德克萨斯州沿海平原上长鼻目动物的首次出现是同时发生的。在Barstovian晚期和Clarendonian晚期的动物群中,海狸是未知的,尽管啮齿类动物的化石通常在这些动物群中并不常见。大多数海狸化石标本是在20世纪初由德克萨斯州农工大学的马克·弗朗西斯博士或德克萨斯州全州古生物矿物学调查的收藏家获得的,并在德克萨斯州脊椎动物古生物收藏馆展出。保存在该设施的档案材料对揭示收集的历史、地点的分布以及对德克萨斯海岸平原中新世脊椎动物生物地层学的不断发展的理解起到了重要作用。史蒂文·r·梅,德克萨斯大学奥斯汀分校杰克逊学校地球历史博物馆,美国德克萨斯州奥斯汀78758。srmay@utexas.edu马修·a·布朗,杰克逊学校地球历史博物馆,德克萨斯大学奥斯汀分校,奥斯汀,德克萨斯州78758,美国。matthewbrown@utexas.edu
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引用次数: 0
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Palaeontologia Electronica
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