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NifEN: a versatile player in nitrogenase assembly, catalysis and evolution. NifEN:在氮酶组装、催化和进化中起着多种作用。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-12 DOI: 10.1007/s00775-024-02086-6
Yilin Hu, Markus W Ribbe

The Mo-nitrogenase catalyzes the reduction of N2 to NH3 at the cofactor of its catalytic NifDK component. NifEN shares considerable homology with NifDK in primary sequence, tertiary structure and associated metallocenters. Better known for its biosynthetic function to convert an all-iron precursor (L-cluster; [Fe8S9C]) to a mature cofactor (M-cluster; [(R-homocitrate) MoFe7S9C]), NifEN also mimics NifDK in catalyzing substrate reduction at ambient conditions. The recently discovered ability of NifEN to reduce N2 to NH3 is particularly interesting, as it points to NifEN as a plausible, prototype ancient nitrogenase during evolution. Moreover, the dual function of NifEN in assembly and catalysis makes it a great template to reconstruct the functional variants or equivalents of NifDK, which could facilitate the mechanistic investigation and heterologous synthesis of nitrogenase. This perspective provides an overview of our recent studies of NifEN, with a focus on the implications of its functional versatility for nitrogenase assembly, catalysis and evolution.

mo -氮酶在其催化组分NifDK的辅因子处催化N2还原为NH3。NifEN与NifDK在一级序列、三级结构和伴生金属中心上具有相当大的同源性。以其转化全铁前体(l簇)的生物合成功能而闻名;[Fe8S9C])为成熟辅因子(m -簇);[(r -均柠檬酸盐)MoFe7S9C]), NifEN也模仿NifDK在环境条件下催化底物还原。最近发现的NifEN将N2还原为NH3的能力特别有趣,因为它表明NifEN在进化过程中是一种可信的原型古氮酶。此外,NifEN在组装和催化方面的双重功能使其成为重建NifDK功能变体或等同物的良好模板,这有助于研究氮酶的机制和异源合成。这一观点概述了我们最近对NifEN的研究,重点关注其在氮酶组装、催化和进化中的功能多样性。
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引用次数: 0
Insights into periplasmic nitrate reductase function under single turnover 单次转换下质周硝酸盐还原酶功能的研究。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-04 DOI: 10.1007/s00775-024-02087-5
Jennifer McGarry, Breeanna Mintmier, Mikayla C. Metzger, Nitai C. Giri, Nicholas Britt, Partha Basu, Jarett Wilcoxen

Nitrate reductases play pivotal roles in nitrogen metabolism by leveraging the molybdopterin cofactor to facilitate the reduction of nitrate to nitrite. Periplasmic nitrate reductases (NapA) utilize nitrate as a terminal electron acceptor when oxygen is limiting, helping to drive anaerobic metabolism in bacteria. Despite extensive research into NapA homologs, open questions about the mechanism remain especially at the molecular level. More broadly, little is understood of how the molybdopterin cofactor is tuned for catalysis in these enzymes enabling broad substrate scope and reactivity observed in molybdenum-containing enzymes. Here, we have prepared NapA from Campylobacter jejuni under single turnover conditions to generate a singly reduced enzyme that can be further examined by electron paramagnetic resonance (EPR) spectroscopy. Our results provide new context into the known spectra and related structures of NapA and related enzymes. These insights open new avenues for understanding nitrate reductase mechanisms, molybdenum coordination dynamics, and the role of pyranopterin ligands in catalysis.

硝酸还原酶在氮代谢中发挥关键作用,利用钼酸盐辅助因子促进硝酸盐还原为亚硝酸盐。当氧气受限时,质周硝酸盐还原酶(NapA)利用硝酸盐作为终端电子受体,帮助驱动细菌的厌氧代谢。尽管对NapA同源物进行了广泛的研究,但关于其机制的开放性问题仍然存在,特别是在分子水平上。更广泛地说,人们对钼酸盐辅助因子如何调节这些酶的催化作用知之甚少,从而使含钼酶具有广泛的底物范围和反应性。本研究以空肠弯曲杆菌为原料,在单次转化条件下制备了一种单次还原酶,该酶可进一步通过电子顺磁共振(EPR)光谱进行检测。我们的结果为已知的NapA和相关酶的光谱和相关结构提供了新的背景。这些见解为理解硝酸还原酶机制、钼配位动力学以及吡蝶呤配体在催化中的作用开辟了新的途径。
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引用次数: 0
In situ detection of ferric reductase activity in the intestinal lumen of an insect 昆虫肠腔内铁还原酶活性的原位检测。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-01 DOI: 10.1007/s00775-024-02080-y
Anna Karen Hernández-Gallardo, Trinidad Arcos-López, Jahir Marceliano Bahena-Lopez, Carlos Tejeda-Guzmán, Salvador Gallardo-Hernández, Samuel M. Webb, Thomas Kroll, Pier Lorenzo Solari, Carolina Sánchez-López, Christophe Den Auwer, Liliana Quintanar, Fanis Missirlis

The rise of atmospheric oxygen as a result of photosynthesis in cyanobacteria and chloroplasts has transformed most environmental iron into the ferric state. In contrast, cells within organisms maintain a reducing internal milieu and utilize predominantly ferrous iron. Ferric reductases are enzymes that transfer electrons to ferric ions, either extracellularly or within endocytic vesicles, enabling cellular ferrous iron uptake through Divalent Metal Transporter 1. In mammals, duodenal cytochrome b is a ferric reductase of the intestinal epithelium, but how insects reduce and absorb dietary iron remains unknown. Here we provide indirect evidence of extracellular ferric reductase activity in a small subset of Drosophila melanogaster intestinal epithelial cells, positioned at the neck of the midgut’s anterior region. Dietary-supplemented bathophenanthroline sulphate (BPS) captures locally generated ferrous iron and precipitates into pink granules, whose chemical identity was probed combining in situ X-ray absorption near edge structure and electron paramagnetic resonance spectroscopies. An increased presence of manganese ions upon BPS feeding was also found. Control animals were fed with ferric ammonium citrate, which is accumulated into ferritin iron in distinct intestinal subregions suggesting iron trafficking between different cells inside the animal. Spectroscopic signals from the biological samples were compared to purified Drosophila and horse spleen ferritin and to chemically synthesized BPS-iron and BPS-manganese complexes. The results corroborated the presence of BPS-iron in a newly identified ferric iron reductase region of the intestine, which we propose constitutes the major site of iron absorption in this organism.

Graphical abstract

由于蓝藻和叶绿体的光合作用,大气中氧气的增加将大多数环境中的铁转化为铁态。相反,生物体内的细胞维持一个减少的内部环境,主要利用亚铁。铁还原酶是一种将电子转移到细胞外或内吞囊泡内的铁离子的酶,使细胞通过二价金属转运蛋白1摄取亚铁。在哺乳动物中,十二指肠细胞色素b是肠上皮的一种铁还原酶,但昆虫如何还原和吸收膳食铁尚不清楚。在这里,我们提供了细胞外铁还原酶活性的间接证据,这些活性存在于一小部分黑腹果蝇肠道上皮细胞中,位于中肠前部的颈部。膳食补充的硫酸钡(BPS)捕获局部生成的亚铁并沉淀成粉红色颗粒,结合原位x射线吸收近边结构和电子顺磁共振波谱来探测其化学特性。还发现BPS饲料中锰离子的存在增加。对照动物喂食柠檬酸铁铵,其在不同的肠道亚区积聚成铁蛋白铁,表明铁在动物体内不同细胞之间运输。生物样品的光谱信号与纯化的果蝇和马脾铁蛋白以及化学合成的bps -铁和bps -锰配合物进行了比较。结果证实了bps -铁存在于新发现的肠铁还原酶区域,我们认为这是该生物铁吸收的主要部位。
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引用次数: 0
Selective binding and removal of copper from biological fluids—why are PSP ligands so efficient? 生物流体中铜的选择性结合和去除——为什么PSP配体如此有效?
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-29 DOI: 10.1007/s00775-024-02082-w
Peter Faller

The following comment tries to answer why the reported removal of copper from buffer, cell culture medium, and cell extract by a supported chelator called phenPS is so selective and efficient. It is further argued that the family of PSP (phosphine sulfide-stabilized phosphines) chelators, due to their unique properties, have various potential future application in biology and medicine such as chelation therapy, copper-sensors, or tools to understand copper metabolism.

下面的评论试图回答为什么报道中使用一种称为phenPS的螯合剂从缓冲液、细胞培养基和细胞提取物中去除铜是如此有选择性和高效。本文进一步认为,PSP(硫化磷稳定磷化氢)螯合剂家族由于其独特的性质,在生物学和医学上具有各种潜在的应用前景,如螯合治疗、铜传感器或了解铜代谢的工具。
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引用次数: 0
Vanadium complexes as potential metal-based antimicrobial drugs 作为潜在金属基抗菌药物的钒络合物。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-26 DOI: 10.1007/s00775-024-02084-8
Meena Kumari, Maridula Thakur, Sonika Sharma, Mala Sharma, Vineet Kumar Choudhary, Reena Sharma, Shubham Sharma, Shalima Kumari, Sachin Kumar

Radical increase of antibiotic resistance among microbes has become a serious problem for clinics all over the world that has led to the need for search of novel types of antimicrobial drugs. Each year, researchers synthesize a multitude of compounds in pursuit of identifying potential chemotherapeutic agents through diverse methodological evaluations. Among the vast array of biologically significant compounds, coordination compounds exhibit a broad range of activities within biological systems. Chelation, in particular, induces significant alterations in the biological properties of ligands and the metal component, contributing to their efficacy. Chelation increases the lipophilicity of metal complexes as a result of which they are easily absorbed by the microorganisms, thus leading to their easy passage across cell membrane. The research and development in the field of metallodrugs can be advantageous to overcome the problem encountered in antibiotic resistance. The multifaceted involvement of vanadium relative to other biometals within biological systems, coupled with its comparatively lower toxicity, underscores its utility in the advancement of novel metal-based therapeutic agents. This review aims to delineate the biological significance of V(V/IV/III) complexes as antimicrobial agents. The amassed data indicate a correlation between the potency of vanadium complexes as antimicrobial agents and the oxidation state of the metal, with III being the least toxic and V representing the most toxic oxidation state of vanadium.

Graphical abstract

微生物对抗生素耐药性的激增已成为全球临床面临的一个严重问题,这导致人们需要寻找新型抗菌药物。每年,研究人员都会合成大量化合物,通过不同的方法评估,寻找潜在的化疗药物。在大量具有重要生物意义的化合物中,配位化合物在生物系统中表现出广泛的活性。尤其是螯合作用,可显著改变配体和金属成分的生物特性,从而提高其药效。螯合作用增加了金属复合物的亲脂性,因此它们很容易被微生物吸收,从而使其易于穿过细胞膜。金属药物领域的研究和开发有利于克服抗生素耐药性问题。与生物系统中的其他生物金属相比,钒具有多方面的参与性,而且毒性相对较低,这突出了钒在开发新型金属治疗剂方面的作用。本综述旨在阐述钒(V/IV/III)配合物作为抗菌剂的生物学意义。所收集的数据表明,钒络合物作为抗菌剂的效力与金属的氧化态之间存在相关性,Ⅲ是毒性最小的钒氧化态,而 V 代表毒性最大的钒氧化态。
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引用次数: 0
Evaluation of Au(III) complexes as Plasmodium falciparum aquaglyceroporin (PfAQP) inhibitors by in silico and in vitro methods 通过硅学和体外方法评估作为恶性疟原虫水甘油腺苷(PfAQP)抑制剂的 Au(III)配合物。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-23 DOI: 10.1007/s00775-024-02081-x
Federico Balgera, Muyideen Kolapo Tijani, Johan Wennerberg, Kristina E. M. Persson, Ebbe Nordlander, Ricardo J. Ferreira

The onset of resistance to artemisinin for malaria treatment has stimulated the quest for novel antimalarial drugs. Herein, the gold(III) coordination complexes Aubipy [Au(bipy)Cl]+ (bipy = 2,2′-bipyridine), Auphen [Au(phen)Cl]+ (phen = phenanthroline), Auterpy [Au(terpy)Cl]2+ (terpy = 2,2′;6′,2″-terpyridine), and corresponding hydrolyzed species, have been investigated as inhibitors of the Plasmodium falciparum aquaglyceroporin (PfAQP) protein by computational methods. Through an in-silico approach using an Umbrella Sampling protocol to sample how Aubipy, Auphen, and Auterpy permeate through the PfAQP, their permeability coefficients were estimated using the Inhomogeneous Solubility Diffusion (ISD) model with promising results. The efficacy of the gold complexes was then probed by an in vitro assay testing the growth inhibition in chloroquine sensitive and resistant P. falciparum strains. In accordance with the computational data, Auterpy achieved the highest efficiency with an IC50 in the nanomolar range (590 nM) on resistant strain cultures, additionally revealing a good selectivity as compared to its activity against the human aquaglyceroporin 3.

Graphical abstract

青蒿素治疗疟疾的抗药性的出现激发了人们对新型抗疟疾药物的探索。在这里,金(III)配位配合物 Aubipy [Au(bipy)Cl]+ (bipy = 2,2'-联吡啶)、Auphen [Au(phen)Cl]+ (phen = 菲罗啉)、Auterpy [Au(terpy)Cl]2+ (terpy = 2,2';6',2″-terpyridine)以及相应的水解产物,作为恶性疟原虫水甘油卟啉(PfAQP)蛋白的抑制剂进行了计算研究。通过使用伞状取样协议对 Aubipy、Auphen 和 Auterpy 如何渗透 PfAQP 进行取样,采用非均相溶解度扩散(ISD)模型估算了它们的渗透系数,结果令人满意。然后,通过体外试验检测了金复合物对氯喹敏感和耐药恶性疟原虫菌株生长的抑制作用,从而探究了金复合物的功效。根据计算数据,Auterpy 对抗药性菌株的抑制效率最高,其 IC50 值在纳摩尔范围内(590 nM),此外,与它对人类水甘油蛋白 3 的活性相比,Auterpy 还具有良好的选择性。
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引用次数: 0
Ascorbate: a forgotten component in the cytotoxicity of Cu(II) ATCUN peptide complexes 抗坏血酸:Cu(II) ATCUN 肽复合物细胞毒性中被遗忘的成分。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 DOI: 10.1007/s00775-024-02083-9
Julian Heinrich, Elisa Siddiqui, Henrike Eckstein, Michael Naumann, Nora Kulak

In 1983, Linus Pauling and colleagues reported about enhanced antitumor activity of the Cu(II) complex of the simplest ATCUN (amino terminal Cu(II) and Ni(II)-binding motif) peptide (NH2-Gly-Gly-His-COOH, GGH) in the presence of ascorbate as an additive. In the following 4 decades, structural modifications of this complex were implemented, however, anticancer activity could not be significantly increased. This has led to neglecting the ATCUN motif and its Cu(II) complexes as potential chemotherapeutic agents. Furthermore, the addition of ascorbate with its positive effect on the anticancer activity has fallen into oblivion. In this work, we compared Cu(II) GGH with Cu(II) ATCUN peptides bearing β-Ala instead of Gly at the 2nd position of the peptide sequence regarding their in vitro complex stability and cytotoxicity (MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) and annexin V-FITC (fluorescein isothiocyanate) apoptosis assay) towards three cancer cell lines (AGS, HeLa and NCI-N87). Such an exchange of amino acids led to an up to three-fold higher cytotoxic effect in the presence of ascorbate. We thus achieved a significant increase in the otherwise moderate cytotoxicity of Cu(II) ATCUN-like complexes. Lipophilicity assays (n-octanol/water coefficient, log P values) of the studied complexes were used to evaluate differences in the antiproliferative activity.

Graphical abstract

1983 年,莱纳斯-鲍林及其同事报告了最简单的 ATCUN(氨基末端 Cu(II)和 Ni(II)结合基团)多肽(NH2-Gly-Gly-His-COOH,GGH)的 Cu(II)复合物在抗坏血酸作为添加剂的情况下增强抗肿瘤活性的情况。在随后的 40 年中,人们对这种复合物进行了结构改造,但抗癌活性并没有显著提高。这导致人们忽视了 ATCUN 主题及其铜(II)复合物作为潜在化疗药物的作用。此外,抗坏血酸的添加对抗癌活性也有积极作用,但却被忽略了。在这项工作中,我们比较了 Cu(II) GGH 与肽序列第 2 位上含有 β-Ala 而非 Gly 的 Cu(II) ATCUN 肽的体外复合物稳定性和细胞毒性(MTT(3-(4、5-二甲基噻唑-2-基)-2,5-二苯基溴化四唑鎓试验)和附件素 V-FITC(异硫氰酸荧光素)凋亡试验)对三种癌细胞系(AGS、HeLa 和 NCI-N87)的体外复合物稳定性和细胞毒性。在有抗坏血酸存在的情况下,这种氨基酸交换可使细胞毒性效果提高三倍。因此,我们显著提高了 Cu(II) ATCUN 类复合物原本适中的细胞毒性。所研究复合物的亲脂性测定(正辛醇/水系数、对数 P 值)用于评估抗增殖活性的差异。
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引用次数: 0
Correction: Quantitative proteomic analysis reveals Ga(III) polypyridyl catecholate complexes disrupt Aspergillus fumigatus mitochondrial function 更正:定量蛋白质组分析显示,Ga(III)多吡啶儿茶酚复合物会破坏曲霉线粒体的功能。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-30 DOI: 10.1007/s00775-024-02079-5
Magdalena Piatek, Brunella Grassiri, Lewis More O’Ferrall, Anna Maria Piras, Giovanna Batoni, Semih Esin, Christine O’Connor, Darren Griffith, Anne Marie Healy, Kevin Kavanagh
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引用次数: 0
Electron transfer in biological systems 生物系统中的电子转移
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-18 DOI: 10.1007/s00775-024-02076-8
Helder M. Marques

Examples of how metalloproteins feature in electron transfer processes in biological systems are reviewed. Attention is focused on the electron transport chains of cellular respiration and photosynthesis, and on metalloproteins that directly couple electron transfer to a chemical reaction. Brief mention is also made of extracellular electron transport. While covering highlights of the recent and the current literature, this review is aimed primarily at introducing the senior undergraduate and the novice postgraduate student to this important aspect of bioinorganic chemistry.

Graphical abstract

本研究综述了金属蛋白如何在生物系统的电子传递过程中发挥作用的实例。重点介绍了细胞呼吸和光合作用的电子传递链,以及将电子传递与化学反应直接耦合的金属蛋白。此外,还简要介绍了细胞外电子传递。虽然本综述涵盖了近期和当前文献的重点内容,但其主要目的是向高年级本科生和研究生新手介绍生物无机化学的这一重要方面。
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引用次数: 0
Rapid method for screening of both calcium and magnesium chelation with comparison of 21 known metal chelators 通过比较 21 种已知金属螯合剂,快速筛选钙镁螯合剂的方法。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-18 DOI: 10.1007/s00775-024-02078-6
Lukáš Konečný, Zuzana Lomozová, Galina Karabanovich, Jaroslav Roh, Kateřina Vávrová, Přemysl Mladěnka

Chelation is the rational treatment modality in metal overload conditions, but chelators are often non-selective and can, hence, cause an imbalance in the homeostasis of physiological metals including calcium and magnesium. The aim of this study was to develop an affordable, rapid but sensitive and precise method for determining the degree of chelation of calcium and magnesium ions and to employ this method for comparison on a panel of known metal chelators. Spectrophotometric method using o-cresolphthalein complexone (o-CC) was developed and its biological relevance was confirmed in human platelets by impedance aggregometry. The lowest detectable concentration of calcium and magnesium ions by o-CC was 2.5 μM and 2 μM, respectively. The indicator was stable for at least 110 days. Four and seven out of twenty-one chelators strongly chelated calcium and magnesium ions, respectively. Importantly, the chelation effect of clinically used chelators was not negligible. Structure–activity relationships for eight quinolin-8-ols showed improvements in chelation particularly in the cases of dihalogen substitution, and a negative linear relationship between pKa and magnesium chelation was observed. Calcium chelation led to inhibition of platelet aggregation in concentrations corresponding to the complex formation. A novel method for screening of efficacy and safety of calcium and magnesium ion chelation was developed and validated.

Graphical abstract

螯合是金属超载情况下的合理治疗方式,但螯合剂通常是非选择性的,因此可能导致包括钙和镁在内的生理金属平衡失调。本研究的目的是开发一种经济、快速但灵敏、精确的方法来确定钙镁离子的螯合程度,并将这种方法与已知的金属螯合剂进行比较。研究人员开发了使用邻甲酚酞络合酮(o-CC)的分光光度法,并通过阻抗聚集测定法确认了该方法在人体血小板中的生物相关性。o-CC 对钙离子和镁离子的最低检测浓度分别为 2.5 μM 和 2 μM。该指示剂至少在 110 天内保持稳定。21 种螯合剂中分别有 4 种和 7 种能强烈螯合钙离子和镁离子。重要的是,临床使用的螯合剂的螯合效果也不容忽视。八种喹啉-8-醇的结构-活性关系显示,螯合效果有所改善,尤其是在二卤素取代的情况下,并且观察到 pKa 与镁螯合之间存在负线性关系。钙螯合可抑制与复合物形成浓度相应的血小板聚集。开发并验证了一种用于筛选钙镁离子螯合有效性和安全性的新方法。
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引用次数: 0
期刊
Journal of Biological Inorganic Chemistry
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