The Journal of Physical Chemistry Letters最新文献

We have developed a critical methodology for the evaluation of the quality of hybrid exchange-correlation (XC) density functional approximations (DFAs) based on very fundamental quantities, i.e., Kohn-Sham (KS) XC potentials, self-consistent electron densities, first ionization potentials (IPs), and total energies. Since the XC potentials, the primary objects in the current study, are not directly accessible for the hybrids, we calculate them by inverting the KS electron densities. Utilizing this methodology, we tested 155 hybrid DFAs available in the LIBXC library using FCI and CCSD(T) methods as a reference. We have found that a group of functionals produces very decent XC potentials, mainly those with a large mixture of Hartree-Fock exchange. Moreover, the value of IP strongly depends on the XC potential quality. On the other hand, we show that the XC energy is dominated by functional-driven error, which in some cases leads to substantial errors in electronic densities. The study shows new directions for constructing more accurate XC functionals within the KS-DFT framework.

Geometric phases play a crucial role in diverse fields. In molecules, they appear when a reaction path encircles an intersection between adiabatic potential energy surfaces and the molecular wave function experiences quantum-mechanical interference effects. This intriguing effect, closely resembling the magnetic Aharonov–Bohm effect, crucially relies on the adiabatic description of the dynamics, and it is an open issue whether and how it persists in an exact quantum dynamical framework. Recent works suggest that the molecular geometric phase is an artifact of the adiabatic approximation, thereby challenging the entire concept. Here, building upon a recent investigation (Martinazzo, R.; Burghardt, I. Phys. Rev. Lett. 2024, 132, 243002), we address this issue using the exact factorization of the total wave function. We introduce instantaneous gauge-invariant phases separately for the electrons and nuclei and use them to monitor the phase difference between the trailing edges of a wavepacket encircling a conical intersection between adiabatic surfaces. The transition from the time-dependent open-path phase differences to the closed-path limit is examined, revealing how the phase differences in the electronic and nuclear subspaces compensate for each other upon path closure. In this way, we unambiguously demonstrate the role of the geometric phase in the interference process and shed light on its persistence beyond the adiabatic approximation.

High-resolution continuous-wave (cw) laser spectroscopy of nitric oxide (NO) molecules has been performed to study and characterize the energy-level structure of and effects of electric fields on the high Rydberg states. The experiments were carried out with molecules flowing through a room temperature gas cell. Rydberg-state photoexcitation was implemented using the resonance enhanced $\left(nl\right)X^{+}{}^1{\Sigma }^{+}\leftarrow H{}^2{\Sigma }^{+}\leftarrow A{}^2{\Sigma }^{+}\leftarrow X{}^2{\Pi }_{3/2}$ three-color three-photon excitation scheme. Excited molecules were detected by high-sensitivity optogalvanic methods. Detailed measurements were made of Rydberg states with principal quantum numbers n = 22 and 32 in the series converging to the lowest rotational and vibrational state of the NO⁺ cation. The experimental data were compared with the results of numerical calculations which provided insight into the orbital angular momentum character of the intermediate H ²Σ⁺ state, improved determinations of the nf and ng quantum defects, a bound on the magnitude of the nh quantum defect, and information on the decay rates of the nf and ng Rydberg states. These measurements represent a step-change in laser spectroscopic studies of high Rydberg states in small atmospheric molecules. They open opportunities for more detailed studies of slow decay processes of Rydberg NO molecules confined in electrostatic traps, the synthesis of ultralong range Rydberg bimolecules, and the development of optical methods for trace gas detection.

Total-internal-reflection tip-enhanced Raman spectroscopy (TIR-TERS) imaging of amyloid-β (Aβ_1-42-L34T) fibrils is performed with nanoscale spatial resolution in water, using TERS tips fabricated by bipolar electrodeposition. Ideal experimental parameters are corroborated by both theoretical simulations and TIR-TERS measurements. TIR-TERS imaging reveals the predominant parallel β-sheet secondary structure of Aβ_1-42-L34T fibrils as well as the nanoscale spatial distribution of tyrosine, histidine, and phenylalanine aromatic amino acids. Their proportion in TERS spectra can be qualitatively explained by the combined effect of their localization in the Aβ_1-42-L34T fibril structure and their molecular orientation with respect to the excitation laser light polarization. Conclusions drawn from the TERS experiments in water corroborate and significantly enrich our previous study in ambient air, thus confirming that hydration has only a marginal impact on the structure of such amyloid fibrils. This first TIR-TERS study in liquid opens fascinating perspectives for future applications in biology.

Peptide-based drugs are powerful inhibitors of therapeutically relevant protein-protein interactions. Their affinity and selectivity for target proteins are commonly assessed using fluorescence-based assays such as anisotropy/polarization or quantitative microarrays. This study reveals that labeling can perturb peptide/protein binding by more than 1 order of magnitude. We have recently developed inhibitors targeted to the N-terminal Src homology 2 (SH2) domain of oncogenic phosphatase SHP2. Despite their high activity and selectivity, these molecules demonstrated an undesired interaction with the SH2 domain of another protein, known as APS, in a fluorescence microarray assay. Fluorescence anisotropy measurement in solution showed that the dissociation constant was significantly influenced by labeling (∼10 times), and the effect depended on the specific fluorophore and SH2 domain. Notably, displacement assays performed with unlabeled peptides were successfully used to eliminate these artifacts, demonstrating that the inhibitors' affinity for their target is over 1,000 times higher than for APS.

We investigate how the threshold voltage (V_T) is adjusted to create a memory window (MW) in ferroelectric field-effect transistors (FeFETs) composed of ferroelectric Hf_0.4Zr_0.6O₂ and InZnO (In₂O₃:ZnO = 9:1 wt %). Temperature-dependent polarization measurements reveal a dipole switching in Hf_0.4Zr_0.6O₂. The properties of the n-type InZnO channel are examined by fabricating an oxide transistor with an HfO₂ gate dielectric. Upon replacement of HfO₂ with Hf_0.4Zr_0.6O₂ in the oxide transistor, a counterclockwise MW is observed. Specifically, as the Hf_0.4Zr_0.6O₂ thickness increases from 16 to 24 nm, the V_T of the FeFET after a + gate voltage (V_G) sweep remains nearly constant, while the V_T after a -V_G sweep shifts significantly from -0.9 to 0.5 V. The enlarged MW of approximately 2 V, which is proportional to the Hf_0.4Zr_0.6O₂ thickness in the FeFET, can be explained by considering the balance between V_G controllability across the gate stack and the ferroelectric switching of Hf_0.4Zr_0.6O₂.