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Structural and functional evidence for two separate oligosaccharide binding sites of Pasteurella multocida hyaluronan synthase 多杀性巴氏杆菌透明质酸合成酶两个独立寡糖结合位点的结构和功能证据
Pub Date : 2013-12-09 DOI: 10.4236/AER.2013.14011
F. Kooy, H. Beeftink, M. Eppink, J. Tramper, G. Eggink, C. Boeriu
Pasteurella multocida hyaluronan synthase (PmHAS) is a bi-functional glycosyltransferase, containing a β1,3-glucuronyltransferase and β1,4-N-acetylglucosaminetransferase domain. PmHAS catalyzes the elongation of hyaluronan (HA) through the sequential addition of single monosaccharides to the non-reducing end of the hyaluronan chain. Research is focused on the relation between the length of the HA oligosaccharide and the single-step elongation kinetics from HA4 up to HA9. It was found that the turnover number kcat increased with length to maximum values of 11 and 14 s-1 for NAc- and UA-transfer, respectively. Interestingly, the specificity constant kcat/KM increased with polymer length from HA5 to HA7 to a value of 44 mM-1s-1, indicating an oligosaccharide binding site with increasing specificity towards a heptasaccharide at the UA domain. The value of kcat/KM remained moderately constant around 8 mM-1s-1 for HA4, HA6, and HA8, indicating a binding site with significantly lower binding specificity at the NAc domain than at the UA domain. These findings are further corroborated by a structural homology model of PmHAS, revealing two distinct sites for binding of oligosaccharides of different sizes, one in each transferase domain. Structural alignment studies between PmHAS and glycosyltransferases of the GT-A fold showed significant similarity in the binding of the UDP-sugars and the orientation of the acceptor substrate. These similarities in substrate orientation in the active site and in essential amino acid residues involved in substrate binding were utilized to localize the two HA oligosaccharide binding sites.
多杀性巴氏杆菌透明质酸合成酶(PmHAS)是一种双功能糖基转移酶,含有β1,3-葡糖醛基转移酶和β1,4- n -乙酰氨基葡萄糖转移酶结构域。PmHAS通过在透明质酸链的非还原端依次添加单糖来催化透明质酸(HA)的延伸。研究的重点是HA低聚糖的长度与HA4到HA9的单步延伸动力学之间的关系。NAc-和ua -的转换次数kcat随长度的增加而增加,分别达到最大值11和14 s-1。有趣的是,特异性常数kcat/KM随着聚合物长度的增加而增加,从HA5到HA7的值为44 mM-1s-1,表明低聚糖结合位点在UA结构域对七糖的特异性增加。HA4、HA6和HA8的kcat/KM值保持在8 mM-1s-1左右,表明NAc结构域的结合特异性明显低于UA结构域。PmHAS的结构同源性模型进一步证实了这些发现,揭示了两个不同大小的寡糖结合的不同位点,每个转移酶结构域一个。PmHAS和GT-A折叠的糖基转移酶之间的结构比对研究表明,在udp -糖的结合和受体底物的取向上有显著的相似性。活性位点的底物取向和参与底物结合的必需氨基酸残基的相似性被用来定位两个HA低聚糖结合位点。
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引用次数: 10
Versatility of microbial proteases 微生物蛋白酶的多功能性
Pub Date : 2013-09-16 DOI: 10.4236/AER.2013.13005
V. Jisha, R. B. Smitha, S. Pradeep, S. Sreedevi, Kizhakkepawothail N. Unni, S. Sajith, P. Priji, M. S. Josh, S. Benjamin
Proteases or peptidases constitute the largest group of enzymes in bio-industry with a long array of uses. They play an invincible role in industrial biotechnology, especially in detergent, food and pharmaceutical arena. This focused review encompasses an overview on alkaline proteases, mainly of microbial sources in a handy module. Following an introduction and general classification with evolutionary insight, major sources of proteases (animal, plant and microbial including fungal, bacterial), their general properties with mechanism of action and molecular masses are discussed. Proteases fromBacillusspp. have been given special attention. In addition to this, an overview on the applications of proteases in detergent, tannery, food, metal recovery and waste treatment industries is also addressed briefly.
蛋白酶或肽酶构成了生物工业中最大的酶群,具有广泛的用途。它们在工业生物技术,特别是在洗涤剂、食品和制药领域发挥着不可战胜的作用。这集中审查包括概述碱性蛋白酶,主要是在一个方便的模块微生物来源。本文介绍了蛋白酶的主要来源(动物、植物和微生物,包括真菌、细菌),讨论了它们的一般性质、作用机制和分子质量。蛋白酶fromBacillusspp。都得到了特别的关注。除此之外,还简要介绍了蛋白酶在洗涤剂、制革、食品、金属回收和废物处理等行业的应用。
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引用次数: 118
Crystal structure, biochemical and biophysical characterisation of NHR1 domain of E3 Ubiquitin ligase neutralized 中和E3泛素连接酶NHR1结构域的晶体结构、生化和生物物理特征
Pub Date : 2013-09-16 DOI: 10.4236/AER.2013.13007
D. Gupta, S. Beaufils, V. Vié, G. Paboeuf, Bill Broadhurst, F. Schweisguth, T. Blundell, V. Bolanos-Garcia
Notch signaling controls diverse developmental decisions of central importance to cell activity. One of the conserved positive regulators of Notch signaling is Neuralized, the E3 Ubiquitin ligase enzyme that regulates signaling activity by endocytosis. Neuralized has two novel repeats, NHR1 and NHR2, with a RING finger motif at the C-terminus. Both endocytosis of the Notch ligand, Delta, and inhibition of Notch signaling by Tom, a bearded family member, require the NHR1 domain. Here we describe the first crystal structure of NHR1 domain from Drosophila melanogaster, solved to 2.1 A resolution by X-ray analysis. Using NMR and other biophysical techniques we define a minimal binding region of Tom, consisting of 12 residues, which interacts with NHR1 and show by interfacial analysis of protein monolayers that NHR1 binds PI4P. Taken together, the studies provide insight into molecular interactions that are important for Notch signaling.
Notch信号控制着多种对细胞活性至关重要的发育决定。Notch信号的一个保守的正调节因子是Neuralized, E3泛素连接酶通过内吞作用调节信号活性。Neuralized有两个新的重复序列,NHR1和NHR2,在c端有一个环指基序。Notch配体Delta的内吞作用和胡须家族成员Tom对Notch信号的抑制都需要NHR1结构域。在这里,我们描述了果蝇NHR1结构域的第一个晶体结构,通过x射线分析解决了2.1 A分辨率。利用核磁共振和其他生物物理技术,我们定义了Tom的最小结合区,由12个残基组成,它与NHR1相互作用,并通过蛋白质单层的界面分析显示NHR1与PI4P结合。综上所述,这些研究提供了对Notch信号重要的分子相互作用的见解。
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引用次数: 5
Kinetic studies on recombinant stem bromelain 重组茎菠萝蛋白酶的动力学研究
Pub Date : 2013-09-16 DOI: 10.4236/AER.2013.13006
M. Bala, M. Mel, M. Jami, A. Amid, H. Salleh
Stem bromelain is a plant thiol protease with several industrial and therapeutic applications. This current work presents kinetic studies of recombinant bromelain (recBM) expressed in Escherichia coli BL21-AI on foursynthetic substrates, N-α-carbobenzoxy-L-alanyl-p-nitrophenylester (ZANPE), N-α-carbobenzoxy-L-arginyl-L-ar-ginine-p-nitroanilide (ZAANA), N-α-carbobenzo-xy-L-phenylalanyl-L-valyl-L-arginine-p-nitroanili-de (ZPVANA) and L-pyroglutamyl-L-phenylalanyl-L-leucine-p-nitroanilide (PFLNA). Hydrolytic activities of recBM at various pH and temperature conditions were compared to that of commercial bromelain (cBM). Both enzymes demonstrated high activities at 45o C and pH 5 - 8 for recBM and pH 6 - 8 for cBM. recBM showed marginally lower Kmand slightly higher kcat/Kmfor ZAANA, ZANPE and ZPVANA in comparison to cBM.trans Epoxysuccinyl-L-leucylamido {4- guanidino}butane (E-64) severely affected recBM and cBM hydrolysis of the synthetic substrates by competitive inhibition with Kivalues of 3.6 - 5.1 μM and 5.5 - 6.9 μM for recBM and cBM, respectively. The evaluated properties of recBM including temperature and pH optima, substrate specificity and sensitivity to inhibitors or activators, satisfy the requisites required for food industries.
茎菠萝蛋白酶是一种具有多种工业和治疗应用的植物硫醇蛋白酶。本文研究了在大肠杆菌BL21-AI中表达重组菠萝蛋白酶(recBM)的四种合成底物:N-α-碳苯氧基-l -丙烯酰-l -精氨酸-l -精氨酸-对硝基苯胺(ZANPE)、N-α-碳苯氧基-l -苯丙酰-l -缬氨酸-l -精氨酸-对硝基苯胺(ZAANA)、N-α-碳苯氧基-l -苯丙酰-l -精氨酸-对硝基苯胺(ZPVANA)和l-焦氨酰-l -苯丙酰-l -亮氨酸-对硝基苯胺(PFLNA)。在不同的pH和温度条件下,与商业菠萝蛋白酶(cBM)的水解活性进行了比较。两种酶在45℃和pH值为5 - 8的条件下均表现出较高的活性。与cBM相比,rebm的kcat/ km值略低,而ZAANA、ZANPE和ZPVANA的kcat/ km值略高。反式环氧琥珀酰-l -乙酰氨基{4-胍基}丁烷(E-64)对合成底物的rebm和cBM的水解具有明显的竞争性抑制作用,其ki值分别为3.6 ~ 5.1 μM和5.5 ~ 6.9 μM。经评估的rebm的性能包括温度和最佳pH值,底物特异性和对抑制剂或活化剂的敏感性,满足食品工业的要求。
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引用次数: 19
Cooperative binding of calcium ions modulates the tertiary structure and catalytic activity of Matrix-Metalloproteinase-9 钙离子的协同结合调节基质金属蛋白酶-9的三级结构和催化活性
Pub Date : 2013-06-20 DOI: 10.4236/AER.2013.12002
Shakila Tobwala, D. Srivastava
To ascertain the molecular basis of Ca2+-mediated activation of matrix metalloproteinase-9 (MMP-9), we determined the accessibility of tryptophan residues to externally added acrylamide as quencher in the absence and presence of the metal ion. The steady-state and time resolved fluorescence data revealed that MMP-9 possesses two classes of tryptophan residues, “exposed” and “buried” which are quenched by the collisional rate constants (kq) of 3.2′ 109M-1.s-1 and 7.5′ 108M-1.s-1, respectively. These values are impaired by approximately two and three-fold, respectively, in the presence of 10 mM Ca2+. The Stern-Volmer constants (Ksv values) predicted from the time resolved fluorescence data (in the absence of Ca2+ ) satisfied the dynamic quenching model of the enzyme’s tryptophan residues. This was not the case in the presence of Ca2+ ; the steady-state acrylamide quenching data could only be explained by a combination of “dynamic” and “static” quenching models. A cumulative account of these data led to the suggestion that the binding of Ca2+ modulated the tertiary structure of the protein by decreasing the dynamic flexibility of the enzyme, which is manifested in further structuring of the enzyme’s active site pocket toward facilitating catalysis. Arguments are presented that the binding of Ca2+ at distal sites “dynamically” communicates with the active site residues of MMP-9 during catalysis.
为了确定Ca2+介导的基质金属蛋白酶-9 (MMP-9)活化的分子基础,我们确定了色氨酸残基在没有和存在金属离子的情况下对外部添加的丙烯酰胺作为猝灭剂的可及性。稳态和时间分辨荧光数据显示,MMP-9具有“暴露”和“埋藏”两类色氨酸残基,它们被3.2 ' 109M-1的碰撞速率常数(kq)猝灭。s-1和7.5 ' 108M-1。s - 1。在10 mM Ca2+的存在下,这些值分别受到大约两倍和三倍的损害。从时间分辨荧光数据(在没有Ca2+的情况下)预测的Stern-Volmer常数(Ksv值)满足酶的色氨酸残基的动态猝灭模型。在Ca2+存在的情况下不是这样;稳态丙烯酰胺猝灭数据只能通过“动态”和“静态”猝灭模型的结合来解释。对这些数据的累积分析表明,Ca2+的结合通过降低酶的动态灵活性来调节蛋白质的三级结构,这表现在酶的活性位点口袋的进一步结构中,以促进催化。有观点认为,在催化过程中,Ca2+在远端位点的结合“动态”地与MMP-9的活性位点残基通信。
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引用次数: 3
Thermostable alkaline protease production from Bacillus pumilus D-6 by using agro-residues as substrates 以农业残基为底物制备矮芽孢杆菌D-6耐热碱性蛋白酶
Pub Date : 2013-06-20 DOI: 10.4236/AER.2013.12003
B. K. Bajaj, Gaytri Jamwal
Proteases due to their wide range of applications in biotechnological processes have been the  focus of intense research for many decades. However, from industrial application view point most of the available proteases lack desired properties; therefore, search for better and efficient thermostable alkaline proteases are always on. Bacillus pumilus D-6, isolated from dairy plant soil sample, in the current study produced protease which showed activity and stability at high alkaline pH (8 - 12) and high temperatures (70。C- 100。C). Enzyme activity remained unfazed even in presence of inhibitors like Pb2+and Hg2+which are considered universal inhibitors of enzyme activity. Besides, the organism successfully utilized crude agriculture based substrates as carbon and nitrogen source and produced substantial enzyme titre.
蛋白酶由于其在生物技术过程中的广泛应用,几十年来一直是人们研究的焦点。然而,从工业应用的角度来看,现有的蛋白酶大多缺乏理想的性能;因此,人们一直在寻找更好、更高效的耐热碱性蛋白酶。本研究从乳品厂土壤样品中分离得到短小芽孢杆菌D-6,其产生的蛋白酶在高碱性pH值(8 ~ 12)和高温(70℃)下均表现出活性和稳定性。C- 100°C)。即使存在Pb2+和Hg2+等被认为是酶活性普遍抑制剂的抑制剂,酶活性仍未受到影响。此外,该生物成功地利用了原始农业基质作为碳和氮源,并产生了大量的酶滴度。
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引用次数: 28
Dexamethasone treatment alters kinetics properties of liver mitochondrial F 0 .F 1 -ATPase and membrane lipid profiles in developing and adult rats 地塞米松治疗改变了发育和成年大鼠肝脏线粒体f0 . f1 - atp酶的动力学特性和膜脂谱
Pub Date : 2013-03-29 DOI: 10.4236/AER.2013.11001
Jignesh D. Pandya, N. Agarwal, Hiren R Modi, S. Katyare
Dexamethasone—a potent synthetic glucocorticoid—has multiple diagnostic and therapeutic applications in wide range of age groups. However, the side-effects of dexamethasone (Dex) treatment including those on development are becoming increasingly apparent. Since the developmental processes are energy-dependent, we examined the effects of chronic Dex treatment on kinetics properties of liver mitochondrial F0.F1-ATPase and mitochondrial membrane lipid profiles in rats belonging to different developmental age groups (2, 3, 4 and 5 weeks) and in adults (~8 weeks). The animals were treated with a subcutaneous dose of 2 mg of Dex/kg body weight (or saline as vehicle) for three alternative days (at around 7.00 A.M.) prior to the day of sacrifice. Dex treatment resulted in significant reduction in F0.F1-ATPase activity in developmental age groups and in adults as compared to their age-matched vehicle-treated control group. The substrate kinetics analysis of F0.F1-ATPase resolved Km and Vmax values in 3 components in all the control age groups; whereas Dex treatment significantly altered the Km and Vmax values or abolished the entire components in age-specific manner. Dex treatment significantly lowered the energy of activation and altered phase transition temperature (TtoC) in all the developmental age groups and in adults. Dex treatment significantly increased the contents of total phospholipid (TPL), individual phospholipids classes and cholesterol (CHL) in all the developmental age groups whereas opposite pattern was observed in adults. The mitochondrial membrane became more fluidized in the developing age groups (2, 4 and 5 weeks); whereas no change was observed in 3-week and adult groups following Dex treatment. In present study, our data demonstrate comprehensive deleterious effects of chronic Dex treatment on liver mitochondrial membrane structure and F0.F1-ATPase functional properties with respect to energy metabolism. At the same time, our data also warns against excessive repeated use of antenatal DEX in treatments in growing and adult human patients.
地塞米松是一种有效的合成糖皮质激素,在广泛的年龄组中具有多种诊断和治疗应用。然而,地塞米松(Dex)治疗的副作用,包括对发育的副作用正变得越来越明显。由于发育过程是能量依赖的,我们研究了慢性Dex治疗对肝脏线粒体F0动力学特性的影响。不同发育年龄组大鼠(2、3、4、5周龄)和成年大鼠(~8周龄)的f1 - atp酶和线粒体膜脂谱。动物在献祭日之前连续3天(上午7点左右)皮下注射2 mg /kg体重的Dex(或生理盐水作为对照品)。Dex治疗导致F0显著降低。发育年龄组和成人的f1 - atp酶活性与同龄车辆对照组比较。F0底物动力学分析。F1-ATPase对各对照组3个成分的Km和Vmax值均有分解作用;而右美托咪定显著改变了Km和Vmax值,或完全消除了各成分的年龄差异。右美托咪唑处理显著降低了所有发育年龄组和成人的激活能和相变温度(TtoC)的改变。Dex处理显著提高了各发育年龄组的总磷脂(TPL)、单个磷脂类和胆固醇(CHL)含量,而成人则相反。在发育中的年龄组(2、4和5周),线粒体膜变得更加流化;而在服用右美托咪定治疗后3周和成年组未见变化。在本研究中,我们的数据显示慢性右美托咪唑治疗对肝脏线粒体膜结构和F0的全面有害影响。f1 - atp酶在能量代谢方面的功能特性。与此同时,我们的数据也警告说,在生长和成年人类患者的治疗中,不要过度重复使用产前DEX。
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引用次数: 3
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酶研究进展(英文)
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