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2017 13th IASTED International Conference on Biomedical Engineering (BioMed)最新文献

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Low-intensity electrical stimulation and stem cells in a dog with acute spinal cord injury 急性脊髓损伤犬的低强度电刺激和干细胞
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-007
E. Krueger, L. M. S. Magri, A. S. Botelho, F. Bach, C. Rebellato, L. Fracaro, F. Fragoso, J. Villanova, P. Brofman, L. Popović-Maneski
Spinal cord injury (SCI) is classified as neurological disorder that affects motor and sensory function below the injury level. Studies show that application of low-intensity electrical stimulation (LIES) to neural tissue increases neurochemical factors responsible for regeneration as nerve growth factor. Stem cell (SC) therapy for patients with SCI can result in the replacement of injured neurons after trauma. The electromechanical delay (EMD) is defined as time elapsed between the onset of muscle electrical activation and onset of force production. A dog diagnosed with incomplete thoracolumbar SCI followed by disc hernia between the vertebral segments LI and L2, was evaluated by electromyography and mechanomyography after surgical decompression procedure, one SC transplantation and LIES. We observed motor response and decrease in the EMD from 8.25ms to 5.75ms after the procedures. The wavelet decomposition of EMG signals showed reestablishment of vastus lateralis muscle activity 30 days after the procedure. In addition, the EMGRMS increased from 3.3 µVRMS to 157 µVRMS. The preliminary results of this case report indicate positive effects of the hybrid therapy involving stem cells and low-intensity electrical stimulation after surgical decompression.
脊髓损伤(SCI)是一种影响损伤水平以下运动和感觉功能的神经系统疾病。研究表明,应用低强度电刺激(LIES)对神经组织增加神经化学因子负责再生作为神经生长因子。干细胞(SC)治疗脊髓损伤患者可导致创伤后损伤神经元的替代。机电延迟(EMD)被定义为肌肉电激活开始和力产生开始之间所经过的时间。一只被诊断为不完全性胸腰椎脊髓损伤的狗,在LI和L2节段之间出现椎间盘突出,在手术减压、1例SC移植和LIES后,通过肌电图和肌力图进行评估。我们观察到运动反应和EMD从8.25ms下降到5.75ms。肌电信号的小波分解显示手术后30天股外侧肌活动恢复。此外,EMGRMS从3.3µVRMS增加到157µVRMS。本病例报告的初步结果表明,在手术减压后,干细胞和低强度电刺激的混合治疗有积极的效果。
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引用次数: 5
Microarray missing data imputation using regression 基于回归的微阵列缺失数据输入
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-033
T. Bayrak, H. Oğul
Having missing values due to several experimental conditions is a common problem in analyzing the results of microarray experiments. Although many imputation methods exist, comparative studies based on regression based models are very limited. Particularly, Relevance Vector Machine (RVM), a recent regression method shown to be effective in various domains, has not been considered so far for missing value imputation in microarray data. In this study, we present a comparative study between regression based models, including linear regression, k-nearest neighbor regression and RVM that uses data obtained from breast, colon and prostate cancer tissues through the microarray technology. The leave-one-out (or Jackknife) procedure is applied for the validation. To measure the performance of the model we used Spearman correlation coefficient (CC). The results reveal that RVM with a Gaussian kernel outperforms other regression models in some cases.
在分析微阵列实验结果时,由于不同的实验条件导致缺失值是一个常见的问题。虽然存在许多估算方法,但基于回归模型的比较研究非常有限。特别是,相关向量机(RVM),一种最近被证明在各个领域有效的回归方法,到目前为止还没有被考虑用于微阵列数据的缺失值插入。在本研究中,我们对基于回归的模型进行了比较研究,包括线性回归、k近邻回归和RVM,这些模型使用了通过微阵列技术从乳腺癌、结肠癌和前列腺癌组织中获得的数据。使用留一(或Jackknife)过程进行验证。为了衡量模型的性能,我们使用Spearman相关系数(CC)。结果表明,具有高斯核的RVM在某些情况下优于其他回归模型。
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引用次数: 4
A numerical analysis of Magneto-Acousto Electrical Tomography with a simplified breast model 基于简化乳房模型的磁声电层析成像数值分析
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-015
Reyhan Zengin, N. G. Gencer
In this study, Magneto-Acousto Electrical Tomography with magnetic measurements technique is investigated using two dimensional (2D) simplified numerical breast model. This technique comprises of the electrical current induction and ultrasound in the static magnetic field. 2D numerical simplified breast geometry is modeled with an ultrasonic transducer (linear phased array (LPA)) placed on the top side of the simplified breast model. A rectangular loop coil is encircled the breast. The sensitivity matrix is obtained for this transducer-coil configuration. LPA transducer is steered with eleven angles (−25 ° to 25 ° at intervals of 5 °). The characteristics of this modality is shown by the singular value decomposition (SVD) method. The reconstruction of the images is performed by truncated SVD approach. This study shows that perturbations (5 mm × 5 mm) up to a depth of 3 cm can be detected.
在本研究中,利用二维(2D)简化的数值乳房模型研究磁声电断层扫描与磁测量技术。该技术由静电磁场中的电流感应和超声波组成。将超声换能器(线性相控阵(LPA))置于简化乳房模型的上方,建立二维数值简化乳房几何模型。一个矩形线圈环绕着乳房。得到了这种传感器线圈结构的灵敏度矩阵。LPA换能器以11个角度(- 25°至25°,间隔5°)进行操纵。用奇异值分解(SVD)方法来显示这种模态的特征。采用截断奇异值分解方法对图像进行重构。这项研究表明,可以检测到深度达3cm的扰动(5mm × 5mm)。
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引用次数: 0
Extraction and visualization of structural information based on FDG-PET images 基于FDG-PET图像的结构信息提取与可视化
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-013
T. Tozaki, M. Senda
In this paper, we investigate the methods to express the structural information such as tube-like shape or isolated region based on fluoro-deoxy glucose(FDG) PET images and its visualization. To extract the human structural information, we calculate the curvatures of two types. One is calculated by Hessian matrix, the other is based on the four dimensional hyper-surface of FDG-PET images. There are three curvatures through each calculations, and these curvatures express original structures such as the linear shape and isolation degree. Using by these features, we extract the abnormal regions which include doubtful cancer. For the visualization, we propose to construct the newly image, that is the extracted abnormal regions are superimposed on the ordinary image which used for diagnosis of cancer. Moreover, we evaluate each abnormal regions from the view point such as the statistical FDG accumulation or the shape information, and we certify the effectiveness of out methods in the diagnosis of cancer.
本文研究了基于氟脱氧葡萄糖(FDG) PET图像的管状或孤立区域等结构信息的表达方法及其可视化。为了提取人体结构信息,我们计算了两种类型的曲率。一种是基于Hessian矩阵计算,另一种是基于FDG-PET图像的四维超表面。通过每次计算得到三个曲率,这些曲率表示原始结构,如线性形状和隔离度。利用这些特征提取可疑癌变的异常区域。在可视化方面,我们提出构建新的图像,即将提取的异常区域叠加在用于癌症诊断的普通图像上。此外,我们还从FDG的统计累积量或形状信息等角度对每个异常区域进行了评价,验证了我们的方法在癌症诊断中的有效性。
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引用次数: 2
Using autoencoders for feature enhancement in motor imagery Brain-Computer Interfaces 使用自动编码器增强运动图像脑机接口的特征
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-052
Mahmoud A. Helal, S. Eldawlatly, M. Taher
Motor imagery is currently one of the main applications of Brain-Computer Interface (BCI) which aims at providing the disabled with means to execute motor commands. One of the major stages of motor imagery systems is reducing the dimensions of the input data and enhancing the features prior to applying a classification stage to recognize the intended movement. In this paper, we utilize autoencoders as a powerful tool to enhance the input features of the band power filtered electroencephalography (EEG) data. We compare the performance of the autoencoder-based approach to using Principal Component Analysis (PCA). Our results demonstrate that using autoencoders with non-linear activation function achieves better performance compared to using PCA. We demonstrate the effects of varying the number of hidden nodes of the autoencoder as well as the activation function on the performance. We finally examine the characteristics of the trained autoencoders to identify the features that are most relevant for the motor imagery classification task.
运动图像是目前脑机接口(BCI)的主要应用之一,它旨在为残疾人提供执行运动命令的手段。运动图像系统的一个主要阶段是在应用分类阶段识别预期运动之前减少输入数据的维度并增强特征。在本文中,我们利用自编码器作为一种强大的工具来增强带功率滤波脑电图数据的输入特征。我们比较了基于自编码器的方法与使用主成分分析(PCA)的性能。我们的研究结果表明,与使用PCA相比,使用非线性激活函数的自编码器获得了更好的性能。我们演示了改变自编码器的隐藏节点数量以及激活函数对性能的影响。最后,我们研究了训练后的自动编码器的特征,以确定与运动图像分类任务最相关的特征。
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引用次数: 6
The study of various impeller design for centrifugal blood pump using computer method 用计算机方法对离心血泵的各种叶轮设计进行了研究
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-041
Praemai Wannawat, Nutchanant Foojinphan, Thananya Khienwad, P. Naiyanetr
A centrifugal blood pump is a meaningful device for heart failure patients. However, the centrifugal blood pump causes side effects to blood for long term used; thrombosis and hemolysis, both factors relate to shear stress, therefore, the pump must be well-designed in order to decrease shear stress. Three types of impellers were designed; backward, forward and straight impeller. Each designed impellers and original impeller were compared together to determine the appropriate impeller for the blood pump.
离心血泵对心力衰竭患者是一种有意义的设备。但离心血泵长期使用对血液有副作用;血栓和溶血,这两个因素都与剪切应力有关,因此,必须设计良好的泵,以减少剪切应力。设计了三种类型的叶轮;后、前、直叶轮。将各设计叶轮与原叶轮进行比较,确定适合血泵的叶轮。
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引用次数: 5
Deformable surface registration for breast tumors tracking: A phantom study 用于乳腺肿瘤跟踪的可变形表面注册:一项幻影研究
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-021
B. Maris, P. Fiorini
A phantom study for breast tumor registration based on the deformation of the external surface is proposed. This study aims at the integration into an image guided system for breast cancer biopsy or ablation. To compensate potentially large breast displacements, due to different positions of the breast during biopsy or ablation compared with pre-operative data, where the diagnosis was made, an initial linear alignment using visible landmarks is involved, followed by thin-plate spline (TPS) registration of the linearly aligned surfaces. Subsequently, the TPS deformation will be applied to the tumors. The results were validated using a multimodal phantom of the breast, while the tumors and the surface were segmented on four different positions of the phantom: prone, supine, vertical and on a side. The use of computed tomography (CT) dataset allowed us to obtain a very precise segmentation of the external surface, of the tumors and the landmarks. Despite large variation among the different positions of the phantom due to the gravitational force, the accuracy of the method at the target point was under 5 millimeters. These results allow us to conclude that, using our prototype image registration system, we are able to align acquisition of the breast in different positions with clinically relevant accuracy.
提出了一种基于外表面形变的乳腺肿瘤假体定位方法。本研究旨在整合影像引导系统用于乳腺癌活检或消融。为了补偿潜在的较大的乳房位移,由于活检或消融期间乳房的位置与术前数据不同,在进行诊断时,使用可见地标进行初始线性对齐,然后对线性对齐的表面进行薄板样条(TPS)配准。随后,将TPS变形应用于肿瘤。使用乳房的多模态模体来验证结果,而肿瘤和表面在四个不同的模体位置上进行分割:俯卧,仰卧,垂直和侧面。计算机断层扫描(CT)数据集的使用使我们能够获得非常精确的外表面分割,肿瘤和地标。尽管由于重力的影响,假体的不同位置会有很大的变化,但该方法在目标点的精度在5毫米以下。这些结果使我们得出这样的结论:使用我们的原型图像配准系统,我们能够将乳腺在不同位置的采集与临床相关的准确性对齐。
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引用次数: 2
Estimation of human reaction time delay during balancing on balance board 人在平衡板上平衡时的反应时间延迟估计
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-048
Csenge A. Molnar, A. Zelei, T. Insperger
Human balancing on a balance board is modelled as a delayed proportional-derivative control mechanism with unknown feedback delay. The mechanical model implies that there exists a critical delay, for which no control gain parameters can stabilize the system. This theoretical critical delay is determined by numerical analysis for different geometries of the balance board. Then the results are compared to real balancing trials on balance boards with the same geometries. Comparison of the unsuccessful balancing trials to the theoretical critical delay suggests that the feedback delay of human balancing task is between 20ms and 110ms.
将人在平衡板上的平衡建模为具有未知反馈延迟的延迟比例导数控制机构。力学模型表明系统存在一个临界延迟,此时没有任何控制增益参数可以使系统稳定。通过对平衡板不同几何形状的数值分析,确定了理论临界延迟。然后将结果与具有相同几何形状的平衡板上的实际平衡试验进行比较。不成功的平衡实验与理论临界延迟的比较表明,人类平衡任务的反馈延迟在20ms ~ 110ms之间。
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引用次数: 11
Haralick's texture analysis applied to colorectal T2-weighted MRI: A preliminary study of significance for cancer evolution Haralick织构分析应用于结直肠t2加权MRI:对癌症演变意义的初步研究
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-019
M. H. Soomro, G. Giunta, A. Laghi, D. Caruso, M. Ciolina, C. De Marchis, S. Conforto, M. Schmid
Haralick's features have been extensively used in texture analysis of medical images. In this contribution, we have applied Haralick's to T2-weighted colorectal MRI for a possible cancer evaluation. In particular, the T2-MRI images of 8 patients with colorectal pathology were identified as early stage malignant and later stage malignant using the whole amount of follow-up exams by radiologists. 192 Haralick's textural features were computed from normalized gray level co-occurrence matrix with respect to four different directions. Mean and standard deviation were also calculated for the extracted features to assess the statistical significance of results. Among all the extracted features, only 5 from 14 Haralick's textural features (viz. energy, contrast, correlation, entropy and inverse difference moment (IDM)) were found as significant for colorectal cancer evaluation. In future research, these five Haralick's textural features may be useful to detect and evaluate colorectal cancer as well as constitute a basis for predicting the prognostic trend of the disease.
Haralick特征在医学图像的纹理分析中得到了广泛的应用。在这篇文章中,我们应用Haralick’s对t2加权的结直肠MRI进行可能的癌症评估。特别是8例结直肠病理患者的T2-MRI图像,通过放射科医师的全程随访检查,确定为早期恶性和晚期恶性。从四个不同方向的归一化灰度共现矩阵中计算Haralick纹理特征。并计算提取特征的均值和标准差,以评估结果的统计显著性。在所有提取的特征中,14个Haralick纹理特征(即能量、对比度、相关性、熵和逆差矩(IDM))中只有5个特征对结直肠癌的评估有显著意义。在未来的研究中,这五种哈拉里克纹理特征可能有助于发现和评估结直肠癌,并构成预测疾病预后趋势的基础。
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引用次数: 16
Endosytosis study of gold nanoparticles through FRET-FLIM approach 利用FRET-FLIM法研究金纳米颗粒的内吞作用
Pub Date : 2017-01-01 DOI: 10.2316/P.2017.852-032
Yinan Zhang, Yu Chen, Jun Yu, D. Birch
In this report we have demonstrated a fluorescence resonant energy transfer (FRET)-fluorescence lifetime imaging microscopy (FLIM) combined approach to study the intracellular pathway of gold nanoparticles. The detected energy transfer between gold nanorods (GNRs) and green fluorescence protein (GFP) labeled Heia cell early endosomes and the in-depth lifetime distribution analysis on the transfer process suggest an endocytotic uptake process of GNRs. Furthermore, the FRET-FLIM method profits from a surface plasmon enhanced energy transfer mechanism when taking into consideration of GNRs and two photon excitation, and is effective in biological imaging, sensing, and even in single molecular tracing in both in vivo and in vitro studies.
在本报告中,我们展示了一种荧光共振能量转移(FRET)-荧光寿命成像显微镜(FLIM)相结合的方法来研究金纳米颗粒的细胞内途径。检测到的金纳米棒(GNRs)与绿色荧光蛋白(GFP)标记的Heia细胞早期内体之间的能量传递,以及传递过程的深度寿命分布分析表明,这是一个GNRs的内吞摄取过程。此外,在考虑gnr和双光子激发的情况下,FRET-FLIM方法利用了表面等离子体增强的能量传递机制,在体内和体外的生物成像、传感甚至单分子示踪研究中都是有效的。
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引用次数: 0
期刊
2017 13th IASTED International Conference on Biomedical Engineering (BioMed)
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