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Computational screening of Viola odorata cyclotides identifies Phyb C as potential PD-1 inhibitor for cancer immunotherapy. 计算筛选堇菜环核苷酸确定Phyb C作为癌症免疫治疗的潜在PD-1抑制剂。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-23 DOI: 10.1007/s11030-025-11465-3
El Mehdi Bouricha, Meryam Magri, Mohammed Hakmi, Kaoutar El Guennouni, Naima El Hafidi, Ilhame Bourais, Saber Boutayeb
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引用次数: 0
Design, synthesis, biological evaluation and computational studies of novel phthalimides as dual COX-2/5-LOX inhibitors. 新型邻苯酰亚胺双COX-2/5-LOX抑制剂的设计、合成、生物学评价和计算研究。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-21 DOI: 10.1007/s11030-025-11431-z
Rasha M Hassan, Mohammed S Abdel-Maksoud, May A El-Manawaty, Ibrahim M Ibrahim, Walaa H Abd-Allah, Aida A El-Azzouny, Mohamed N Aboul-Enein
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引用次数: 0
Design and synthesis of novel thiazole/1,2,4-triazole/quinoline hybrids as antiproliferative agents, apoptosis inducers, immunomodulators, and multi-EGFR/BRAFV600E/HER-2 inhibitors. 设计和合成新型噻唑/1,2,4-三唑/喹啉杂合体作为抗增殖剂、细胞凋亡诱导剂、免疫调节剂和多种egfr /BRAFV600E/HER-2抑制剂。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-21 DOI: 10.1007/s11030-026-11467-9
Aliaa M Mohassab, Bahaa G M Youssif, Abdullah Yahya Abdullah Alzahrani, Hesham A Abou-Zied, Stefan Bräse, Mohamed A A Abdel-Aal, Kamal S Abdelrahman, Samar H Abbas
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引用次数: 0
Synthesis of redox-responsive polyurethane nanocapsules for small-molecule delivery and antitumor evaluation on human leukemia K562 cells. 氧化还原反应聚氨酯纳米胶囊的合成及其对人白血病K562细胞的抗肿瘤作用
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-21 DOI: 10.1007/s11030-026-11466-w
Na Shi, Mengting Liu, Dandan He, Nianlin Feng, Yi Zhang, Dandan Liu, Chenchen Li, Zhenchao Wang

High concentrations of glutathione (GSH) in the tumor microenvironment (TME) represent a promising target for the development of polyurethane (PU)-based redox-responsive drug delivery systems. A series of 3-indolopyrazole acetamide derivatives were designed and synthesized in this study. The anti-proliferative activities of these compounds were evaluated in tumor cell lines, and the small molecule S11 (IC50 = 2.64 μM) was identified as a potent inhibitor of human chronic myeloid leukemia K562 cells. To overcome the challenges of poor solubility and limited stability associated with the hydrophobic small molecule S11, polyurethane nanocapsules containing disulfide bonds (S-S) were innovatively synthesized. Subsequently, drug-loaded polyurethane nanocapsules (S11-1) were synthesized via interfacial polymerization. In vitro experimental results indicated that these nanocapsules exhibit enhanced drug release performance compared to free S11, with a GSH-responsive release mechanism. Furthermore, S11-1 effectively promotes K562 cell apoptosis, elevates intracellular Reactive Oxygen Species (ROS) levels, and induces mitochondrial membrane potential depolarization (MMP). Overall, S11-1 demonstrates considerable potential in enhancing drug delivery efficiency, improving targeting precision, and modulating biological activity.

肿瘤微环境(TME)中高浓度谷胱甘肽(GSH)为开发基于聚氨酯(PU)的氧化还原反应性药物递送系统提供了一个有希望的靶点。本研究设计并合成了一系列3-吲哚吡唑乙酰胺衍生物。在肿瘤细胞系中检测了这些化合物的抗增殖活性,并鉴定了小分子S11 (IC50 = 2.64 μM)对人慢性髓系白血病K562细胞的抑制作用。为了克服与疏水小分子S11相关的溶解度差和稳定性有限的挑战,创新地合成了含有二硫键(S-S)的聚氨酯纳米胶囊。随后,通过界面聚合合成了载药聚氨酯纳米胶囊(S11-1)。体外实验结果表明,与游离S11相比,这些纳米胶囊具有增强的药物释放性能,具有gsh响应释放机制。此外,S11-1有效促进K562细胞凋亡,提高细胞内活性氧(ROS)水平,诱导线粒体膜电位去极化(MMP)。总之,S11-1在提高给药效率、提高靶向精度和调节生物活性方面具有相当大的潜力。
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引用次数: 0
Novel pyrazole-oxadiazole-chalcone/oxime hybrids as dual EGFR/VEGFR-2 inhibitors with promising anticancer potential: a comprehensive cytotoxicity evaluation, mechanistic insights and SAR analysis. 新型吡唑-恶二唑-查尔酮/肟复合物作为具有抗癌潜力的EGFR/VEGFR-2双重抑制剂:综合细胞毒性评估,机制见解和SAR分析。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-21 DOI: 10.1007/s11030-025-11411-3
Omar Alshazly, Mohamed Abdel-Aziz, Gamal El-Din A Abuo-Rahma, Mamdouh F A Mohamed

A novel series of pyrazole-1,3,4-oxadiazole hybrids incorporating chalcone/oxime scaffolds (10a-10c, 11a-11c, 12a-12i, 13a-13i, and 14a-14i) was synthesized and subjected to an detailed cytotoxicity profile against the NCI-60 human cancer cell line panel. Several derivatives demonstrated broad-spectrum growth inhibition, with compounds 10b, 11a, and 11b emerging as the most active candidates, exhibiting mean GI₅₀ values in the low micromolar range (4.36-16.4 µM). A deeper biological assessment revealed that these hybrids act as dual inhibitors of EGFR and VEGFR-2, with compound 11b showing the highest potency (IC₅₀ = 26.38 nM and 114.17 nM, respectively). Mechanistic studies further confirmed that 11b induced G2/M phase arrest and triggered apoptotic pathways in MCF-7 cells. The oxime-containing analogs exhibited enhanced nitric oxide (NO) release, a property associated with modulation of angiogenesis and increased susceptibility of cancer cells to apoptosis, contributing to their observed anticancer activity. Molecular docking and structure-activity relationship analysis clarified the binding interactions and substitution patterns governing activity, and both cytotoxicity and mechanistic analyses converged on compound 11b as the most promising lead of the series.

合成了一系列新的吡唑-1,3,4-恶二唑杂合体,其中含有查尔酮/肟支架(10a-10c, 11a-11c, 12a-12i, 13a-13i和14a-14i),并对NCI-60人类癌细胞进行了详细的细胞毒性分析。几种衍生物表现出广谱生长抑制作用,化合物10b, 11a和11b成为最活跃的候选者,在低微摩尔范围内(4.36-16.4µM)表现出平均GI₅0值。更深层次的生物学评估显示,这些杂交体作为EGFR和VEGFR-2的双重抑制剂,化合物11b显示出最高的效力(IC₅₀分别= 26.38 nM和114.17 nM)。机制研究进一步证实11b诱导MCF-7细胞G2/M期阻滞并触发凋亡通路。含肟类似物表现出增强的一氧化氮(NO)释放,这一特性与调节血管生成和增加癌细胞对凋亡的易感性有关,有助于观察到它们的抗癌活性。分子对接和结构-活性关系分析明确了化合物的结合相互作用和取代模式,细胞毒性和机制分析均将化合物11b作为该系列中最有希望的先导物。
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引用次数: 0
Design, synthesis, and biological evaluation of quinoxalinyl and quinolinyl derivatives as ALK5 inhibitors. 喹啉基和喹啉基衍生物作为ALK5抑制剂的设计、合成和生物学评价。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-14 DOI: 10.1007/s11030-025-11444-8
Chuang Liu, Jun Li, Yu-Qi Lu, Yu-Xin Jiang, Cheng-Hua Jin

Six series of ether (14a-i and 15a-i), ester (17a-f and 18a-f) and amine derivatives (21a and 22a-g) containing quinoxalinyl and quinolinyl moieties were synthesized and evaluated for their inhibitory activities against activin receptor-like kinase 5 (ALK5). Among all the compounds, compound 22f (IC50 = 0.267 μM) exhibited the highest ALK5 inhibitory activity, comparable to that of the positive control LY-2157299. This study revealed that introducing amino groups into the side chains of quinoxalinyl and quinolinyl derivatives is more effective in enhancing ALK5 inhibition than ether or ester groups. These findings provide new insights and a theoretical foundation for the development of pyrazole-based ALK5 inhibitors.

合成了6个系列含有喹啉基和喹啉基的醚(14a-i和15a-i)、酯(17a-f和18a-f)和胺衍生物(21a和22a-g),并评价了它们对激活素受体样激酶5 (ALK5)的抑制活性。其中化合物22f (IC50 = 0.267 μM)对ALK5的抑制活性最高,与阳性对照LY-2157299相当。本研究表明,在喹啉基和喹啉基衍生物的侧链中引入氨基基团比醚或酯基团更有效地增强了对ALK5的抑制作用。这些发现为吡唑类ALK5抑制剂的开发提供了新的见解和理论基础。
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引用次数: 0
Repurposing approved drugs as potential inhibitors of Mycobacterium tuberculosis ClpP: Structure-based virtual screening, molecular dynamics, and in vitro evaluation. 重新利用已批准的药物作为结核分枝杆菌ClpP的潜在抑制剂:基于结构的虚拟筛选,分子动力学和体外评估。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-14 DOI: 10.1007/s11030-025-11452-8
Smriti Bhardwaj, Kuldeep K Roy
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引用次数: 0
Integrative gene target mapping, RNA sequencing, in silico molecular docking, ADMET profiling and molecular dynamics simulation study of marine derived molecules for type 1 diabetes mellitus. 1型糖尿病海洋源性分子的综合基因定位、RNA测序、计算机分子对接、ADMET谱分析和分子动力学模拟研究
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-14 DOI: 10.1007/s11030-025-11453-7
Basavaraj Vastrad, Shivaling Pattanashetti, Veeresh Sadashivanavar, K S R Pai, Chanabasayya Vastrad

Type 1 diabetes mellitus (T1DM) is a metabolic disease leading threat to human health around the world. Here we aimed to explore new biomarkers and potential therapeutic targets in T1DM through adopting integrated bioinformatics tools. The gene expression Omnibus (GEO) database was used to obtain next generation sequencing data (GSE270484) of T1DM and normal control samples. Furthermore, differentially expressed genes (DEGs) were screened using the DESeq2 package in R bioconductor package. Gene Ontology (GO) and pathway enrichment analyses were performed by g:Profiler. The protein-protein interaction (PPI) network was plotted with IID PPI database and visualized using Cytoscape. Module analysis of the PPI network was done using PEWCC. Then, microRNAs (miRNAs) and transcription factors (TFs) in T1DM were screened out from the miRNet and NetworkAnalyst database. Then, the miRNA-hub gene regulatory network and TF-hub gene regulatory network were constructed by Cytoscape software. Moreover, a drug-hub gene interaction network of the hub genes was constructed and predicted the drug molecule against hub genes. The receiver operating characteristic (ROC) curves were generated to predict diagnostic value of hub genes. Finally we performed molecular docking, ADMET profiling and molecular dynamics simulation studies of marine derived chemical constituents using Schrodinger Suite 2025-1. A total of 958 DEGs were screened: 479 up regulated genes and 479 down regulated genes. DEG were mainly enriched in the terms of developmental process, membrane, cation binding, response to stimulus, cell periphery, ion binding, neuronal system and metabolism. Based on the data of protein-protein interaction (PPI), the top 10 hub genes (5 up regulated and 5 down regulated) were ranked, including FN1, GSN, ADRB2, CEP128, FLNA, CD74, EFEMP2, POU6F2, P4HA2 and BCL6. The miRNA-hub gene regulatory network and TF-hub gene regulatory network showed that hsa-mir-657, hsa-miR-1266-5p, NOTCH1 and GTF3C2 might play an important role in the pathogenesis of T1DM. The drug-hub gene interaction network showed that Clenbuterol, Diethylstilbestrol, Selegiline and Isoflurophate predicted therapeutic drugs for the T1DM. Molecular docking and molecular dynamics simulation study revealed that CMNPD5805 and CMNPD30286 as potential inhibitors of FN1 (pdb id: 3M7P) a key biomarker in pathogenesis of T1DM. These findings promote the understanding of the molecular mechanism and clinically related molecular targets for T1DM.

1型糖尿病(T1DM)是全球范围内威胁人类健康的主要代谢性疾病。在这里,我们旨在通过采用综合生物信息学工具探索T1DM的新生物标志物和潜在治疗靶点。使用基因表达Omnibus (GEO)数据库获取T1DM和正常对照样本的下一代测序数据(GSE270484)。此外,使用R bioconductor包中的DESeq2包筛选差异表达基因(DEGs)。基因本体(GO)和途径富集分析由g:Profiler进行。蛋白质-蛋白质相互作用(PPI)网络用IID PPI数据库绘制,并用Cytoscape进行可视化。利用PEWCC对PPI网络进行了模块分析。然后,从miRNet和NetworkAnalyst数据库中筛选出T1DM中的microrna (miRNAs)和转录因子(tf)。然后利用Cytoscape软件构建miRNA-hub基因调控网络和TF-hub基因调控网络。构建了药物-中心基因相互作用网络,预测了药物分子对中心基因的作用。生成受试者工作特征(ROC)曲线,预测中枢基因的诊断价值。最后,我们使用Schrodinger Suite 2025-1进行了分子对接、ADMET分析和海洋衍生化学成分的分子动力学模拟研究。共筛选到958个基因,其中上调基因479个,下调基因479个。DEG主要富集在发育过程、膜、阳离子结合、刺激反应、细胞外周、离子结合、神经元系统和代谢等方面。根据蛋白-蛋白相互作用(PPI)数据,对FN1、GSN、ADRB2、CEP128、FLNA、CD74、EFEMP2、POU6F2、P4HA2、BCL6等前10位枢纽基因(上调5个,下调5个)进行排序。miRNA-hub基因调控网络和TF-hub基因调控网络显示,hsa-mir-657、hsa-miR-1266-5p、NOTCH1和GTF3C2可能在T1DM的发病机制中发挥重要作用。药物中心基因相互作用网络显示克仑特罗、己烯雌酚、斯来吉兰和异氟酸盐预测T1DM的治疗药物。分子对接和分子动力学模拟研究显示CMNPD5805和CMNPD30286是T1DM发病机制关键生物标志物FN1 (pdb id: 3M7P)的潜在抑制剂。这些发现促进了对T1DM分子机制和临床相关分子靶点的理解。
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引用次数: 0
A novel matrine derivative B10 exerts its anti-liver cancer activity in vitro and in vivo via targeting FGFR3/PI3K/AKT signaling pathway. 新型苦参碱衍生物B10在体外和体内通过靶向FGFR3/PI3K/AKT信号通路发挥抗肝癌活性。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-14 DOI: 10.1007/s11030-025-11460-8
Xingdong Wang, Yuxin Xie, Zhouxing Hu, Siyi Wang, Manqi Li, Lichuan Wu, Jun Jiang, Lisheng Wang

Natural products represent a cornerstone in anticancer drug discovery owing to their structural diversity and unique bioactivities. Among them, matrine-a principal alkaloid derived from the traditional Chinese medicine Sophora flavescens-has attracted attention due to its documented antitumor properties; however, its clinical translation has been severely hampered by inherently low potency. To address this limitation, we designed and synthesized 28 novel matrine-thiophene hybrids via a structure-based molecular hybridization approach. Notably, the lead compound B10 exhibited a dramatic enhancement in anticancer efficacy, demonstrating IC₅₀ values of 4.13-5.79 µM against hepatocellular carcinoma (HCC) cell lines, which reflects an improvement of more than 1000-fold compared to the parent matrine, while showing minimal toxicity toward normal hepatocytes. Furthermore, in an in vivo xenograft model, B10 (40 mg/kg) achieved a tumor growth inhibition rate of 64.2%, outperforming the standard drug sorafenib. Critically, to decipher the underlying mechanism, we employed a proteolysis-targeting chimera (PROTAC) strategy, converting B10 into a targeted degrader, K2. This chemical probe enabled us to identify fibroblast growth factor receptor 3 (FGFR3) as a direct target of B10 and to elucidate its role in suppressing the FGFR3/PI3K/AKT signaling pathway. Collectively, this study not only presents B10 as a highly promising candidate for HCC treatment derived from a natural product scaffold, but also identifies FGFR3 as a novel therapeutic target in HCC, thereby providing an innovative and generalizable platform for target deconvolution and mechanistic investigation of natural product-based agents.

天然产物因其结构多样性和独特的生物活性而成为抗癌药物开发的基石。其中,苦参碱(从中药苦参中提取的主要生物碱)因其抗肿瘤特性而备受关注;然而,其固有的低效价严重阻碍了其临床转化。为了解决这一限制,我们通过基于结构的分子杂交方法设计并合成了28个新的母体-噻吩杂合体。值得注意的是,先导化合物B10在抗癌功效方面表现出显着增强,对肝细胞癌(HCC)细胞系的IC₅0值为4.13-5.79 μ M,与母体苦参碱相比,这反映了超过1000倍的改善,同时对正常肝细胞的毒性最小。此外,在体内异种移植模型中,B10 (40 mg/kg)实现了64.2%的肿瘤生长抑制率,优于标准药物索拉非尼。关键的是,为了破译潜在的机制,我们采用了蛋白水解靶向嵌合体(PROTAC)策略,将B10转化为靶向降解物K2。这种化学探针使我们能够鉴定成纤维细胞生长因子受体3 (FGFR3)是B10的直接靶点,并阐明其在抑制FGFR3/PI3K/AKT信号通路中的作用。总之,本研究不仅提出了B10作为天然产物支架治疗HCC的极具前景的候选药物,而且还确定了FGFR3作为HCC的新治疗靶点,从而为基于天然产物的药物的靶点反卷积和机制研究提供了一个创新和可推广的平台。
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引用次数: 0
Structure-guided design and DFT-based optimization of natural product-derived dual inhibitors targeting CDK-1 and PARP-1. 靶向CDK-1和PARP-1的天然产物衍生双抑制剂的结构导向设计和基于dft的优化。
IF 3.8 2区 化学 Q2 CHEMISTRY, APPLIED Pub Date : 2026-01-14 DOI: 10.1007/s11030-025-11456-4
Suruchi Bhambri, Arzoo Rai, Prakash C Jha
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引用次数: 0
期刊
Molecular Diversity
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