Biodiversity genomes最新文献

We present the complete genome sequences of 26 species of snakes from Sri Lanka, including 12 taxa endemic to the island. Illumina sequencing was performed on genetic material from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

We present the complete genome sequences of 64 species of amphibians (61 Anurans, 2 Caudates and 1 Caecilian) including complete genomes from four type specimens. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

We present the complete genome sequences of 11 species of kingbirds. Illumina sequencing was performed on genetic material from wild-caught and museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

We present complete genome sequences of 12 species of Percopsiformes.

We present the first genome assembly of Psalidodon fasciatus, a rheophilic fish recently classified within Acestrorhamphidae and distributed across major South American river basins. Known for its karyotypic diversity and cryptic speciation potential, P. fasciatus was sequenced using Illumina Hi-Seq and assembled with SPAdes and Zanfona, resulting in 471,706 scaffolds at 60× coverage. The assembled genome is available in GenBank (Assembly ID: ASM5207532v1) and provides a valuable resource for evolutionary and taxonomic studies in Brazilian ichthyofauna.

We present the complete genome sequences of 20 species of African tetras, robbers, and tigerfishes in the families Alestidae, Hepsetidae, and Lepidarchidae. Illumina sequencing was performed on genetic material from wild-caught and aquarium specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.

We present the complete genome sequences of 22 species of owls. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

We present the complete genome sequences of five species of vipers: Agkistrodon piscivorus, Crotalus aquilus, Crotalus enyo, Crotalus mitchellii, and Crotalus viridis. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The data is publicly available via Genbank.

We present short-read genome assemblies of three butterfly species native to the state of Florida: the Atala butterfly (Eumaeus atala), the Miami blue (Cyclargus thomasi bethunebakeri), and the Schaus' swallowtail (Heraclides ponceana). All species are of conservation concern with the latter two listed as federally endangered. Genome assemblies recovered 77-92% of single-copy orthologous insect genes, providing a valuable resource for advancing lepidopteran genomic research.

High-quality genomes are rapidly increasing across seagrasses. However, it remains limited for tropical seagrasses of the Hydrocharticae family, with most research focused on temperate seagrasses such as Posidonia spp. and Zostera spp. We present the complete genome sequences of two species of tropical Caribbean seagrasses, Syringrodium filiforme and Halophila stipulacea. Illumina sequencing was performed on genetic material from wild-collected specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank. These genomes will be useful for comparison studies, specifically studying adaptations linked to invasion success. Furthermore, H. stipulacea is the world's most invasive seagrass, colonizing new habitats in the Mediterranean and Caribbean Seas where it can transform native coastal ecosystems. This work expands on seagrass research efforts, highlighting the power of long-read assemblies to retrieve high-quality genomes.