首页 > 最新文献

Biodiversity genomes最新文献

英文 中文
The Complete Genome Sequence of Protonotaria citrea, the Prothonotary Warbler. 原翅莺(Protonotaria citrea)全基因组序列。
Pub Date : 2022-01-01 DOI: 10.56179/001c.38920
Nicholas D Antonson, Mark E Hauber, Wendy M Schelsky, Hannah M Scharf, Lesley Bulluck, Catherine Viverette, Stacy Pirro, Than J Boves
The Prothonotary Warbler (Protonotaria citrea) is a nearctic-neotropical migratory songbird that breeds in forested swamps and riparian areas in the eastern-central United States and southern Ontario. It is the sole eastern North American wood-warbler that nests in cavities, the only species in the genus Protonotaria, and is one of the few hole-nesting hosts of the Brown-headed Cowbird (Molothrus ater), an obligate brood parasite. We present the whole genome sequence of this wood-warbler species. Illumina sequencing was performed on a genetic sample from a single female individual. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR19579445) and Assembly (JAOYNP000000000).
原花莺(原花莺)是一种近北极新热带候鸟,在美国中东部和安大略省南部的森林沼泽和河岸地区繁殖。它是北美东部唯一一种在洞中筑巢的林莺,是原翅莺属中唯一的物种,也是褐头牛鹂(专性幼虫寄生虫)为数不多的在洞中筑巢的宿主之一。我们展示了这个林莺物种的全基因组序列。Illumina测序是对来自单个女性个体的基因样本进行的。使用从头开始的方法组装reads,然后进行收尾步骤。原始数据和汇编数据可通过Genbank: Sequence Read Archive (SRR19579445)和Assembly (jaaoynp000000000)公开获取。
{"title":"The Complete Genome Sequence of <i>Protonotaria citrea,</i> the Prothonotary Warbler.","authors":"Nicholas D Antonson,&nbsp;Mark E Hauber,&nbsp;Wendy M Schelsky,&nbsp;Hannah M Scharf,&nbsp;Lesley Bulluck,&nbsp;Catherine Viverette,&nbsp;Stacy Pirro,&nbsp;Than J Boves","doi":"10.56179/001c.38920","DOIUrl":"https://doi.org/10.56179/001c.38920","url":null,"abstract":"The Prothonotary Warbler (Protonotaria citrea) is a nearctic-neotropical migratory songbird that breeds in forested swamps and riparian areas in the eastern-central United States and southern Ontario. It is the sole eastern North American wood-warbler that nests in cavities, the only species in the genus Protonotaria, and is one of the few hole-nesting hosts of the Brown-headed Cowbird (Molothrus ater), an obligate brood parasite. We present the whole genome sequence of this wood-warbler species. Illumina sequencing was performed on a genetic sample from a single female individual. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR19579445) and Assembly (JAOYNP000000000).","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645680/pdf/nihms-1846748.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9711204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Morelia viridis, the Green Tree Python. 绿树巨蟒绿纹莫雷利亚全基因组序列。
Pub Date : 2022-01-01 DOI: 10.56179/001c.66204
Benson H Morrill, Ian S Bessell, Stacy Pirro

The Green Tree Python (Morelia viridis) is a snake native to New Guinea, some islands in Indonesia, and the Cape York Peninsula in Australia. We present the whole genome sequence for this species. Illumina sequencing was performed on a genetic sample from a single individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data are publicly available via Genbank: Sequence Read Archive (SRR19167500) and genome (JANHOE000000000).

绿树蟒(Morelia viridis)是一种原产于新几内亚、印度尼西亚的一些岛屿和澳大利亚的约克角半岛的蛇。我们展示了该物种的全基因组序列。Illumina测序是对来自单个个体的基因样本进行的。使用从头开始的方法组装这些reads,然后使用一系列来自相关物种的参考文献进行整理。原始数据和汇编数据可通过Genbank: Sequence Read Archive (SRR19167500)和genome (JANHOE000000000)公开获取。
{"title":"The Complete Genome Sequence of <i>Morelia viridis</i>, the Green Tree Python.","authors":"Benson H Morrill,&nbsp;Ian S Bessell,&nbsp;Stacy Pirro","doi":"10.56179/001c.66204","DOIUrl":"https://doi.org/10.56179/001c.66204","url":null,"abstract":"<p><p>The Green Tree Python (<i>Morelia viridis</i>) is a snake native to New Guinea, some islands in Indonesia, and the Cape York Peninsula in Australia. We present the whole genome sequence for this species. Illumina sequencing was performed on a genetic sample from a single individual. The reads were assembled using a <i>de novo</i> method followed by a series of references from related species for finishing. The raw and assembled data are publicly available via Genbank: Sequence Read Archive (SRR19167500) and genome (JANHOE000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/21/ff/nihms-1861548.PMC9835526.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Lythrypnus dalli, the Bluebanded Goby. 蓝带虾虎鱼(Lythrypnus dali)全基因组序列。
Pub Date : 2022-01-01
Kuk-Jeong Chin, Matthew S Grober, Stacy Pirro

The Bluebanded goby (Lythrypnus dalli) is a small, highly social marine goby. We present the whole genome sequence of this species. A total of 118,266,160 paired end reads consisting of 17.9G bases were obtained by sequencing tissue from a single individual. The reads were assembled by a de novo method followed by alignment to related species. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170315) and Assembly (GCA_011763505).

蓝带虾虎鱼(Lythrypnus dalli)是一种小型、高度群居的海洋虾虎鱼。我们展示了该物种的全基因组序列。通过对单个个体的组织进行测序,共获得118,266,160对末端reads,包含17.9个碱基。这些reads通过一种新的方法组装,然后与相关物种进行比对。原始数据和汇编数据可通过Genbank: Sequence Read Archive (SRR5170315)和Assembly (GCA_011763505)公开获取。
{"title":"The Complete Genome Sequence of <i>Lythrypnus dalli,</i> the Bluebanded Goby.","authors":"Kuk-Jeong Chin,&nbsp;Matthew S Grober,&nbsp;Stacy Pirro","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>The Bluebanded goby (<i>Lythrypnus dalli</i>) is a small, highly social marine goby. We present the whole genome sequence of this species. A total of 118,266,160 paired end reads consisting of 17.9G bases were obtained by sequencing tissue from a single individual. The reads were assembled by a <i>de novo</i> method followed by alignment to related species. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170315) and Assembly (GCA_011763505).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9681038/pdf/nihms-1847765.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 18 Species of Gadiformes (Actinopterygii, Chordata). 18种毛线形目(放线形目,脊索目)的全基因组序列。
Pub Date : 2022-01-01 DOI: 10.56179/001c.56079
Adela Roa-Varon, Stacy Pirro

We present the complete genome sequences of 18 species of Gadiformes from 9 genera. Illumina sequencing was performed on genetic material from single wild-caught individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data is publicly available via Genbank.

本文报道了9属18种加蝶目动物的全基因组序列。对单个野生捕获个体的遗传物质进行Illumina测序。使用从头开始的方法组装reads,然后进行收尾步骤。原始和汇总的数据可通过Genbank公开获取。
{"title":"The Complete Genome Sequences of 18 Species of Gadiformes (Actinopterygii, Chordata).","authors":"Adela Roa-Varon,&nbsp;Stacy Pirro","doi":"10.56179/001c.56079","DOIUrl":"https://doi.org/10.56179/001c.56079","url":null,"abstract":"<p><p>We present the complete genome sequences of 18 species of Gadiformes from 9 genera. Illumina sequencing was performed on genetic material from single wild-caught individuals. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data is publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718482/pdf/nihms-1853581.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Cyanopsitta spixii, the Spix's Macaw. 斯皮克斯金刚鹦鹉的全基因组序列。
Pub Date : 2022-01-01 Epub Date: 2022-08-20 DOI: 10.56179/001c.37839
Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett

The Spix's Macaw (Cyanopsitta spixii) is a critically endangered parrot that was once endemic to Brazil. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR15037507) and Assembly (GCA_024336845).

斯皮克斯金刚鹦鹉(spixii)是一种极度濒危的鹦鹉,曾经是巴西的特有物种。我们展示了该物种的全基因组序列。对单个圈养个体的基因样本进行Illumina测序。使用从头开始的方法组装这些reads,然后使用一系列来自相关物种的参考文献进行整理。原始数据和汇编数据可通过Genbank: Sequence Read Archive (SRR15037507)和Assembly (GCA_024336845)公开获取。
{"title":"The Complete Genome Sequence of <i>Cyanopsitta spixii,</i> the Spix's Macaw.","authors":"Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.37839","DOIUrl":"10.56179/001c.37839","url":null,"abstract":"<p><p>The Spix's Macaw (<i>Cyanopsitta spixii</i>) is a critically endangered parrot that was once endemic to Brazil. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR15037507) and Assembly (GCA_024336845).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/72/d7/nihms-1847760.PMC9718372.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biodiversity genomes
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1