We present the complete genome sequences of 9 species of Papilionidae from 3 genera (Graphium, Ornithoptera, Papilio). Illumina sequencing was performed on genetic material from individual wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.
{"title":"The Complete Genome Sequences of 9 Species of Swallowtail Butterflies (Papilionidae, Lepidoptera).","authors":"Deborah Triant, Stacy Pirro","doi":"10.56179/001c.73927","DOIUrl":"https://doi.org/10.56179/001c.73927","url":null,"abstract":"<p><p>We present the complete genome sequences of 9 species of Papilionidae from 3 genera (Graphium, Ornithoptera, Papilio). Illumina sequencing was performed on genetic material from individual wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10078614/pdf/nihms-1887200.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We present the complete genome sequences of 7 species of the zoantharian genus Epizoanthus. Illumina sequencing was performed on genetic material from single wild-collected individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.
{"title":"The Complete Genome Sequences of 7 Species of <i>Epizoanthus</i> (Epizoanthidae, Zoantharia, Hexacorallia, Cnidaria).","authors":"Hiroki Kise, James Davis Reimer, Stacy Pirro","doi":"10.56179/001c.72780","DOIUrl":"https://doi.org/10.56179/001c.72780","url":null,"abstract":"<p><p>We present the complete genome sequences of 7 species of the zoantharian genus <i>Epizoanthus</i>. Illumina sequencing was performed on genetic material from single wild-collected individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019602/pdf/nihms-1881078.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9347875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-03-01Epub Date: 2023-03-17DOI: 10.56179/001c.73625
Zainab El Ouafi, Stacy Pirro, Najib Al Idrissi, Hassan Ghazal
Curcuma longa is a perennial native to India and Southeast Asia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR11229490) and assembled genome (JAOBBC000000000).
{"title":"The Complete Genome Sequence of <i>Curcuma longa</i> (Zingiberaceae, Zingiberales), Turmeric.","authors":"Zainab El Ouafi, Stacy Pirro, Najib Al Idrissi, Hassan Ghazal","doi":"10.56179/001c.73625","DOIUrl":"10.56179/001c.73625","url":null,"abstract":"<p><p><i>Curcuma longa</i> is a perennial native to India and Southeast Asia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR11229490) and assembled genome (JAOBBC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062376/pdf/nihms-1884921.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9400241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Douae El Ghoubali, Stacy Pirro, Chakib Nejjari, Hassan Ghazal
Chrysina resplendens is a scarab beetle endemic to Central America. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170512) and Assembly (JAADJY000000000).
{"title":"The Complete Genome Sequence of <i>Chrysina resplendens</i> (Scarabaeidae, Coleoptera) the Golden Jewel Scarab.","authors":"Douae El Ghoubali, Stacy Pirro, Chakib Nejjari, Hassan Ghazal","doi":"10.56179/001c.72798","DOIUrl":"https://doi.org/10.56179/001c.72798","url":null,"abstract":"<p><p><i>Chrysina resplendens</i> is a scarab beetle endemic to Central America. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170512) and Assembly (JAADJY000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019531/pdf/nihms-1881135.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Verbascum thapsus is a biennial plant native to Europe, northern Africa, and Asia and introduced in the Americas and Australia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR18183247) and assembled genome (JAOXOC000000000).
{"title":"The Complete Genome Sequence of <i>Verbascum thapsus</i> (Scrophulariaceae, Lamiales), the Common Mullein.","authors":"Oussama Badad, Stacy Pirro, Qamar Lahlimi, Hassan Ghazal","doi":"10.56179/001c.73050","DOIUrl":"10.56179/001c.73050","url":null,"abstract":"<p><p><i>Verbascum thapsus</i> is a biennial plant native to Europe, northern Africa, and Asia and introduced in the Americas and Australia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR18183247) and assembled genome (JAOXOC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062438/pdf/nihms-1885463.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9400240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Riccardo Virgili, Angelo Poliseno, Stacy Pirro, James Davis Reimer
We present the complete genome sequence of Dorometra sesokonis. Genome sequencing was performed on genetic material from a single wild-collected individual. The sequence reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.
{"title":"A Draft Genome Sequence of <i>Dorometra sesokonis</i> (Antedonidae, Comatulida, Crinoidea, Echinodermata).","authors":"Riccardo Virgili, Angelo Poliseno, Stacy Pirro, James Davis Reimer","doi":"10.56179/001c.72775","DOIUrl":"https://doi.org/10.56179/001c.72775","url":null,"abstract":"<p><p>We present the complete genome sequence of <i>Dorometra sesokonis</i>. Genome sequencing was performed on genetic material from a single wild-collected individual. The sequence reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019518/pdf/nihms-1881117.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-01-01Epub Date: 2023-04-21DOI: 10.56179/001c.74632
João Marcos G Capurucho, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett
We present the complete genome sequences of 19 species of snipes from 7 genera. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.
{"title":"The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves).","authors":"João Marcos G Capurucho, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.74632","DOIUrl":"10.56179/001c.74632","url":null,"abstract":"<p><p>We present the complete genome sequences of 19 species of snipes from 7 genera. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10162776/pdf/nihms-1895121.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9439667","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Waldir M Berbel-Filho, Stacy Pirro, Andrew W Thompson, Sergio M Q Lima, Sofia Consuegra, Ricardo Betancur
The killifish genus Kryptolebias currently contains seven recognized species found in freshwater and mangrove microhabitats in South and Central America, the Caribbean, and Florida. Kryptolebias species have several unique features. Beyond its amphibious nature, two of the Kryptolebias species (K. marmoratus and K. hermaphroditus sensu Costa 2011) are the only known vertebrates capable of self-fertilization. Although reference genomes for self-fertilizing species are readily available, a complete understanding of the genomic basis leading to the transition in mating systems in the genus requires more genomic resources at a broader taxonomic level. Here, we present the complete genome sequences for three Kryptolebias species from Brazil: the endangered freshwater species Kryptolebias brasiliensis and Kryptolebias gracilis and the androdiecious but obligate outcrossing Kryptolebias ocellatus (sensu Costa 2011). The raw data and assembled genomes are available in GenBank.
鳉鱼属(Kryptolebias)目前有7个已被确认的物种,分布在南美洲、中美洲、加勒比海和佛罗里达州的淡水和红树林微栖息地。Kryptolebias物种有几个独特的特征。除了它的两栖性质,两种Kryptolebias物种(K. marmoratus和K. hermaphroditus sensu Costa 2011)是唯一已知的能够自我受精的脊椎动物。虽然自交物种的参考基因组很容易获得,但要全面了解导致交配系统转变的基因组基础,需要在更广泛的分类水平上获得更多的基因组资源。在这里,我们展示了来自巴西的三种Kryptolebias物种的完整基因组序列:濒临灭绝的淡水物种Kryptolebias brasiliensis和Kryptolebias gracilis以及雌雄同体但专性异交的Kryptolebias ocellatus (sensu Costa 2011)。原始数据和组装的基因组可在GenBank中获得。
{"title":"The Complete Genome Sequences of three species from the killifish genus <i>Kryptolebias</i> (Rivulidae, Cyprinodontiformes).","authors":"Waldir M Berbel-Filho, Stacy Pirro, Andrew W Thompson, Sergio M Q Lima, Sofia Consuegra, Ricardo Betancur","doi":"10.56179/001c.77448","DOIUrl":"https://doi.org/10.56179/001c.77448","url":null,"abstract":"<p><p>The killifish genus <i>Kryptolebias</i> currently contains seven recognized species found in freshwater and mangrove microhabitats in South and Central America, the Caribbean, and Florida. <i>Kryptolebias</i> species have several unique features. Beyond its amphibious nature, two of the <i>Kryptolebias</i> species (<i>K. marmoratus</i> and <i>K. hermaphroditus sensu</i> Costa 2011) are the only known vertebrates capable of self-fertilization. Although reference genomes for self-fertilizing species are readily available, a complete understanding of the genomic basis leading to the transition in mating systems in the genus requires more genomic resources at a broader taxonomic level. Here, we present the complete genome sequences for three <i>Kryptolebias</i> species from Brazil: the endangered freshwater species <i>Kryptolebias brasiliensis</i> and <i>Kryptolebias gracilis</i> and the androdiecious but obligate outcrossing <i>Kryptolebias ocellatus</i> (<i>sensu</i> Costa 2011). The raw data and assembled genomes are available in GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361417/pdf/nihms-1905249.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9862956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-01-01Epub Date: 2023-10-15DOI: 10.56179/001c.89031
John P Wares, Stacy Pirro
We present the complete genome sequences of Geukensia demissa and Geukensia granosissima. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are available via Genbank.
{"title":"The Complete Genome Sequences of 2 Species of Geukensia (Brachidontinae, Mytilidae).","authors":"John P Wares, Stacy Pirro","doi":"10.56179/001c.89031","DOIUrl":"10.56179/001c.89031","url":null,"abstract":"<p><p>We present the complete genome sequences of <i>Geukensia demissa</i> and <i>Geukensia granosissima</i>. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601176/pdf/nihms-1938360.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54232582","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-01-01Epub Date: 2023-11-20DOI: 10.56179/001c.91279
Demian A Willette, Stacy Pirro, Luz R Romena, Mudjekeewis D Santos
Portunus pelagicus is a large crab found in the Indo-Pacific. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR25655135) and assembled genome (JAWWMC000000000).
{"title":"The Complete Genome Sequence of <i>Portunus pelagicus</i> (Portunidae, Decapoda), the Blue Swimming Crab.","authors":"Demian A Willette, Stacy Pirro, Luz R Romena, Mudjekeewis D Santos","doi":"10.56179/001c.91279","DOIUrl":"https://doi.org/10.56179/001c.91279","url":null,"abstract":"<p><p><i>Portunus pelagicus</i> is a large crab found in the Indo-Pacific. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR25655135) and assembled genome (JAWWMC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2023 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10745231/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139032853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}