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The Complete Genome Sequence of Adansonia digitata (Malvaceae, Malvales), the African Baobab. 非洲猴面包树Adansonia digitata (malvacae, Malvales)的全基因组序列。
Pub Date : 2023-03-01 DOI: 10.56179/001c.72789
Stephen Woods, Kathleen O'Neill, Stacy Pirro

Adansonia digitata, the African Baobab, is a long-lived tree species found in sub-Saharan Africa. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR23340274) and assembled genome (JAQSVH000000000).

非洲猴面包树是一种生长在撒哈拉以南非洲的长寿树种。我们展示了该物种的全基因组序列。Illumina配对末端reads通过从头开始的方法组装,然后进行结束步骤。原始数据和组装数据可通过GenBank: Sequence Read Archive (SRR23340274)和组装基因组(JAQSVH000000000)公开获取。
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引用次数: 0
The Complete Genome Sequences of 9 Species of Swallowtail Butterflies (Papilionidae, Lepidoptera). 9种凤尾蝶(凤蝶科,鳞翅目)全基因组序列。
Pub Date : 2023-03-01 DOI: 10.56179/001c.73927
Deborah Triant, Stacy Pirro

We present the complete genome sequences of 9 species of Papilionidae from 3 genera (Graphium, Ornithoptera, Papilio). Illumina sequencing was performed on genetic material from individual wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

本文报道了凤蝶科3属9种的全基因组序列(笔科,鸟翅目,凤蝶科)。对单个野生捕获标本的遗传物质进行Illumina测序。使用从头开始的方法组装reads,然后进行收尾步骤。原始和汇总的数据可通过Genbank公开获取。
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引用次数: 0
The Complete Genome Sequences of 7 Species of Epizoanthus (Epizoanthidae, Zoantharia, Hexacorallia, Cnidaria). 7种刺槐属植物的全基因组序列分析(刺槐科、刺槐属、刺虫属)。
Pub Date : 2023-03-01 DOI: 10.56179/001c.72780
Hiroki Kise, James Davis Reimer, Stacy Pirro

We present the complete genome sequences of 7 species of the zoantharian genus Epizoanthus. Illumina sequencing was performed on genetic material from single wild-collected individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.

本文报道了7种动物的全基因组序列。对单个野生个体的遗传物质进行Illumina测序。使用从头开始的方法组装reads,然后进行收尾步骤。原始和汇总的数据可通过GenBank公开获取。
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引用次数: 1
The Complete Genome Sequence of Curcuma longa (Zingiberaceae, Zingiberales), Turmeric. 姜黄(姜科、姜属)的完整基因组序列。
Pub Date : 2023-03-01 Epub Date: 2023-03-17 DOI: 10.56179/001c.73625
Zainab El Ouafi, Stacy Pirro, Najib Al Idrissi, Hassan Ghazal

Curcuma longa is a perennial native to India and Southeast Asia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR11229490) and assembled genome (JAOBBC000000000).

姜黄是一种原产于印度和东南亚的多年生植物。我们展示了该物种的全基因组序列。Illumina成对末端读数采用从头开始的方法进行组装,然后再进行整理。原始数据和组装数据可通过 GenBank 公开获取:Sequence Read Archive (SRR11229490) 和 assembled genome (JAOBBC000000000)。
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引用次数: 0
The Complete Genome Sequence of Chrysina resplendens (Scarabaeidae, Coleoptera) the Golden Jewel Scarab. 金玉圣甲虫(金龟子科,鞘翅目)全基因组序列。
Pub Date : 2023-03-01 DOI: 10.56179/001c.72798
Douae El Ghoubali, Stacy Pirro, Chakib Nejjari, Hassan Ghazal

Chrysina resplendens is a scarab beetle endemic to Central America. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170512) and Assembly (JAADJY000000000).

金蝶是中美洲特有的圣甲虫。我们展示了该物种的全基因组序列。对单个圈养个体的基因样本进行Illumina测序。使用从头开始的方法组装这些reads,然后使用一系列来自相关物种的参考文献进行整理。原始数据和汇编数据可通过Genbank: Sequence Read Archive (SRR5170512)和Assembly (JAADJY000000000)公开获取。
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引用次数: 0
The Complete Genome Sequence of Verbascum thapsus (Scrophulariaceae, Lamiales), the Common Mullein. 普通毛蕊花属植物马鞭草(Scrophulariaceae, Lamiales)的完整基因组序列。
Pub Date : 2023-03-01 Epub Date: 2023-03-07 DOI: 10.56179/001c.73050
Oussama Badad, Stacy Pirro, Qamar Lahlimi, Hassan Ghazal

Verbascum thapsus is a biennial plant native to Europe, northern Africa, and Asia and introduced in the Americas and Australia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR18183247) and assembled genome (JAOXOC000000000).

马鞭草(Verbascum thapsus)是一种二年生植物,原产于欧洲、非洲北部和亚洲,后被引入美洲和澳大利亚。我们展示了该物种的全基因组序列。Illumina成对末端读数是通过从头开始的方法进行组装的,然后进行了整理步骤。原始数据和组装数据可通过 GenBank 公开获取:Sequence Read Archive (SRR18183247) 和 assembled genome (JAOXOC000000000)。
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引用次数: 0
A Draft Genome Sequence of Dorometra sesokonis (Antedonidae, Comatulida, Crinoidea, Echinodermata). 一个Dorometra sesokonis的基因组序列草案(Antedonidae,Comatulida,Crinoidea,Echinodermata)。
Pub Date : 2023-01-01 DOI: 10.56179/001c.72775
Riccardo Virgili, Angelo Poliseno, Stacy Pirro, James Davis Reimer

We present the complete genome sequence of Dorometra sesokonis. Genome sequencing was performed on genetic material from a single wild-collected individual. The sequence reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.

我们提出了全基因组序列的Dorometra sesokonis。对单个野生个体的遗传物质进行基因组测序。序列reads采用de novo方法组装,然后进行结束步骤。原始和汇总的数据可通过GenBank公开获取。
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引用次数: 0
The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves). 19种鹬(鞘翅目,鞘翅目,鸟类)的全基因组序列。
Pub Date : 2023-01-01 Epub Date: 2023-04-21 DOI: 10.56179/001c.74632
João Marcos G Capurucho, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett

We present the complete genome sequences of 19 species of snipes from 7 genera. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

本文报道了7属19种鹬的全基因组序列。对博物馆标本的遗传物质进行Illumina测序。使用从头开始的方法组装reads,然后进行收尾步骤。原始和汇总的数据可通过Genbank公开获取。
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引用次数: 0
The Complete Genome Sequences of three species from the killifish genus Kryptolebias (Rivulidae, Cyprinodontiformes). 三种鳉鱼属(鲤科,鲤形目)的全基因组序列。
Pub Date : 2023-01-01 DOI: 10.56179/001c.77448
Waldir M Berbel-Filho, Stacy Pirro, Andrew W Thompson, Sergio M Q Lima, Sofia Consuegra, Ricardo Betancur

The killifish genus Kryptolebias currently contains seven recognized species found in freshwater and mangrove microhabitats in South and Central America, the Caribbean, and Florida. Kryptolebias species have several unique features. Beyond its amphibious nature, two of the Kryptolebias species (K. marmoratus and K. hermaphroditus sensu Costa 2011) are the only known vertebrates capable of self-fertilization. Although reference genomes for self-fertilizing species are readily available, a complete understanding of the genomic basis leading to the transition in mating systems in the genus requires more genomic resources at a broader taxonomic level. Here, we present the complete genome sequences for three Kryptolebias species from Brazil: the endangered freshwater species Kryptolebias brasiliensis and Kryptolebias gracilis and the androdiecious but obligate outcrossing Kryptolebias ocellatus (sensu Costa 2011). The raw data and assembled genomes are available in GenBank.

鳉鱼属(Kryptolebias)目前有7个已被确认的物种,分布在南美洲、中美洲、加勒比海和佛罗里达州的淡水和红树林微栖息地。Kryptolebias物种有几个独特的特征。除了它的两栖性质,两种Kryptolebias物种(K. marmoratus和K. hermaphroditus sensu Costa 2011)是唯一已知的能够自我受精的脊椎动物。虽然自交物种的参考基因组很容易获得,但要全面了解导致交配系统转变的基因组基础,需要在更广泛的分类水平上获得更多的基因组资源。在这里,我们展示了来自巴西的三种Kryptolebias物种的完整基因组序列:濒临灭绝的淡水物种Kryptolebias brasiliensis和Kryptolebias gracilis以及雌雄同体但专性异交的Kryptolebias ocellatus (sensu Costa 2011)。原始数据和组装的基因组可在GenBank中获得。
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引用次数: 0
The Complete Genome Sequences of 2 Species of Geukensia (Brachidontinae, Mytilidae). 2种钩虫的全基因组序列。
Pub Date : 2023-01-01 Epub Date: 2023-10-15 DOI: 10.56179/001c.89031
John P Wares, Stacy Pirro

We present the complete genome sequences of Geukensia demissa and Geukensia granosissima. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are available via Genbank.

本文报道了半毛假丝酵母和格兰假丝酵母的全基因组序列。对博物馆标本的遗传物质进行Illumina测序。使用从头开始的方法组装读数,然后进行精加工步骤。原始数据和汇编数据可通过Genbank获得。
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引用次数: 0
期刊
Biodiversity genomes
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