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Prediction of the synergistic effect of antimicrobial peptides and antimicrobial agents via supervised machine learning 通过有监督的机器学习预测抗菌肽和抗菌剂的协同效应
Pub Date : 2024-01-17 DOI: 10.1186/s42490-024-00075-z
Basak Olcay, Gizem D. Ozdemir, Mehmet A. Ozdemir, Utku K. Ercan, Onan Guren, Ozan Karaman
Infectious diseases not only cause severe health problems but also burden the healthcare system. Therefore, the effective treatment of those diseases is crucial. Both conventional approaches, such as antimicrobial agents, and novel approaches, like antimicrobial peptides (AMPs), are used to treat infections. However, due to the drawbacks of current approaches, new solutions are still being investigated. One recent approach is the use of AMPs and antimicrobial agents in combination, but determining synergism is with a huge variety of AMPs time-consuming and requires multiple experimental studies. Machine learning (ML) algorithms are widely used to predict biological outcomes, particularly in the field of AMPs, but no previous research reported on predicting the synergistic effects of AMPs and antimicrobial agents. Several supervised ML models were implemented to accurately predict the synergistic effect of AMPs and antimicrobial agents. The results demonstrated that the hyperparameter-optimized Light Gradient Boosted Machine Classifier (oLGBMC) yielded the best test accuracy of 76.92% for predicting the synergistic effect. Besides, the feature importance analysis reveals that the target microbial species, the minimum inhibitory concentrations (MICs) of the AMP and the antimicrobial agents, and the used antimicrobial agent were the most important features for the prediction of synergistic effect, which aligns with recent experimental studies in the literature. This study reveals that ML algorithms can predict the synergistic activity of two different antimicrobial agents without the need for complex and time-consuming experimental procedures. The implications support that the ML models may not only reduce the experimental cost but also provide validation of experimental procedures.
传染病不仅会造成严重的健康问题,还会给医疗系统带来负担。因此,有效治疗这些疾病至关重要。传统方法(如抗菌剂)和新型方法(如抗菌肽)都被用于治疗感染。然而,由于目前的方法存在缺陷,新的解决方案仍在研究之中。最近的一种方法是将 AMPs 和抗菌剂结合使用,但确定 AMPs 的协同作用非常耗时,需要进行多次实验研究。机器学习(ML)算法被广泛用于预测生物学结果,特别是在 AMPs 领域,但以前没有关于预测 AMPs 和抗菌剂协同作用的研究报告。为了准确预测 AMPs 和抗菌剂的协同效应,我们采用了几种有监督的 ML 模型。结果表明,超参数优化光梯度提升机分类器(oLGBMC)预测协同效应的测试准确率最高,达到 76.92%。此外,特征重要性分析表明,目标微生物种类、AMP 和抗菌剂的最低抑菌浓度(MICs)以及使用的抗菌剂是预测协同效应的最重要特征,这与近期文献中的实验研究结果一致。本研究揭示了 ML 算法可以预测两种不同抗菌剂的协同活性,而无需复杂耗时的实验过程。这表明 ML 模型不仅能降低实验成本,还能验证实验过程。
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引用次数: 0
A pressure monitoring approach for pressure ulcer prevention. 压疮预防的压力监测方法。
Pub Date : 2023-08-11 DOI: 10.1186/s42490-023-00074-6
Bethel Osuagwu, Euan McCaughey, Mariel Purcell

Background: A pressure ulcer (PU) is a debilitating condition that disproportionately affects people with impaired mobility. PUs facilitate tissue damage due to prolonged unrelieved pressure, degrading quality of life with a considerable socio-economic impact. While rapid treatment is crucial, an effective  prevention strategy may help avoid the development of PUs altogether. While pressure monitoring is currently used in PU prevention, available monitoring approaches are not formalised and do not appropriately account for accumulation and relief of the effect of an applied pressure over a prolonged duration. The aim of this study was to define an approach that incorporates the accumulation and relief of an applied load to enable continuous pressure monitoring.

Results: A tunable continuous pressure magnitude and duration monitoring approach that can account for accumulated damaging effect of an applied pressure and pressure relief over a prolonged period is proposed. Unlike classic pressure monitoring approaches, the presented method provides ongoing indication of the net impact of a load during and after loading.

Conclusions: The tunable continuous pressure magnitude and duration monitoring approach proposed here may further development towards formalised pressure monitoring approaches that aim to provide information on the risk of PU formation in real-time.

背景:压疮(PU)是一种使人衰弱的疾病,对行动能力受损的人影响很大。脓肿由于长期未缓解的压力而导致组织损伤,降低生活质量,并产生相当大的社会经济影响。虽然快速治疗至关重要,但有效的预防策略可能有助于完全避免脓液的发展。虽然压力监测目前用于PU预防,但现有的监测方法尚未正式确定,并且不能适当地考虑长时间施加压力的影响的积累和缓解。本研究的目的是定义一种方法,该方法结合了施加载荷的累积和释放,以实现连续压力监测。结果:提出了一种可调的连续压力大小和持续时间监测方法,该方法可以解释在长时间内施加压力和压力释放的累积破坏性影响。与传统的压力监测方法不同,本文提出的方法提供了加载期间和加载后负载净影响的持续指示。结论:本文提出的可调连续压力大小和持续时间监测方法可能进一步发展为正规化的压力监测方法,旨在实时提供PU形成风险的信息。
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引用次数: 0
A novel wearable device for automated real-time detection of epileptic seizures. 一种用于癫痫发作自动实时检测的新型可穿戴设备。
Pub Date : 2023-07-17 DOI: 10.1186/s42490-023-00073-7
Mikael Habtamu, Keneni Tolosa, Kidus Abera, Lamesgin Demissie, Samrawit Samuel, Yeabsera Temesgen, Elbetel Taye Zewde, Ahmed Ali Dawud

Background: Epilepsy is a neurological disorder that has a variety of origins. It is caused by hyperexcitability and an imbalance between excitation and inhibition, which results in seizures. The World Health Organization (WHO) and its partners have classified epilepsy as a major public health concern. Over 50 million individuals globally are affected by epilepsy which shows that the patient's family, social, educational, and vocational activities are severely limited if seizures are not controlled. Patients who suffer from epileptic seizures have emotional, behavioral, and neurological issues. Alerting systems using a wearable sensor are commonly used to detect epileptic seizures. However, most of the devices have no multimodal systems that increase sensitivity and lower the false discovery rate for screening and intervention of epileptic seizures. Therefore, the objective of this project was, to design and develop an efficient, economical, and automatically detecting epileptic seizure device in real-time.

Methods: Our design incorporates different sensors to assess the patient's condition such as an accelerometer, pulsoxymeter and vibration sensor which process body movement, heart rate variability, oxygen denaturation, and jerky movement respectively. The algorithm for real-time detection of epileptic seizures is based on the following: acceleration increases to a higher value of 23.4 m/s2 or decreases to a lower value of 10 m/s2 as energy is absorbed by the body, the heart rate increases by 10 bpm from the normal heart rate, oxygen denaturation is below 90% and vibration should be out of the range of 3 Hz -17 Hz. Then, a pulsoxymeter device was used as a gold standard to compare the heart rate variability and oxygen saturation sensor readings. The accuracy of the accelerometer and vibration sensor was also tested by a fast-moving and vibrating normal person's hand.

Results: The prototype was built and subjected to different tests and iterations. The proposed device was tested for accuracy, cost-effectiveness and ease of use. An acceptable accuracy was achieved for the accelerometer, pulsoxymeter, and vibration sensor measurements, and the prototype was built only with a component cost of less than 40 USD excluding design, manufacturing, and other costs. The design is tested to see if it fits the design criteria; the results of the tests reveal that a large portion of the scientific procedures utilized in this study to identify epileptic seizures is effective.

Conclusion: This project is objectively targeted to design a medical device with multimodal systems that enable us to accurately detect epileptic seizures by detecting symptoms commonly associated with an episode of epileptic seizure and notifying a caregiver for immediate assistance. The proposed device has a great impact on reducing epileptic seizer mortality, especially in lo

背景:癫痫是一种有多种病因的神经系统疾病。它是由过度兴奋性和兴奋与抑制之间的不平衡引起的,从而导致癫痫发作。世界卫生组织(世卫组织)及其合作伙伴将癫痫列为一项重大公共卫生问题。全球有5000多万人受到癫痫的影响,这表明如果癫痫发作得不到控制,患者的家庭、社会、教育和职业活动将受到严重限制。患有癫痫发作的患者有情绪、行为和神经问题。使用可穿戴传感器的警报系统通常用于检测癫痫发作。然而,大多数设备没有多模态系统,以增加敏感性和降低癫痫发作的筛查和干预的错误发现率。因此,本课题的目标是设计和开发一种高效、经济、实时自动检测癫痫发作的装置。方法:我们的设计采用不同的传感器来评估患者的病情,如加速度计、脉搏计和振动传感器,分别处理身体运动、心率变异性、氧变性和突然运动。实时检测癫痫发作的算法是基于:随着能量被身体吸收,加速度增加到23.4 m/s2的较高值或降低到10 m/s2的较低值,心率比正常心率增加10 bpm,氧变性低于90%,振动应不在3hz - 17hz的范围内。然后,使用脉搏计装置作为金标准来比较心率变异性和氧饱和度传感器读数。加速度计和振动传感器的准确性也通过一个快速移动和振动的普通人的手来测试。结果:构建了原型并进行了不同的测试和迭代。对该装置进行了准确性、成本效益和易用性测试。加速度计、脉搏计和振动传感器的测量精度达到了可接受的水平,并且原型机的组件成本低于40美元,不包括设计、制造和其他成本。对设计进行测试,看它是否符合设计标准;测试结果表明,在本研究中用于识别癫痫发作的大部分科学程序是有效的。结论:本项目的客观目标是设计一种具有多模式系统的医疗设备,使我们能够通过检测癫痫发作通常相关的症状并通知护理人员立即提供帮助来准确检测癫痫发作。该装置对降低癫痫发作死亡率有很大的影响,特别是在缺乏专业知识和治疗的低资源环境中。
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引用次数: 0
Assistive technology: opportunities for societal inclusion of persons with disabilities and independence of the elderly. 辅助技术:残疾人融入社会和老年人独立的机会。
Pub Date : 2023-07-03 DOI: 10.1186/s42490-023-00072-8
Aliaa Rehan Youssef, Ahmed Morsy

Assistive technology (AT) development worldwide aims to enhance the quality of life for persons with disabilities and elderly, yet its development and commercialization may face challenges. This collection aims at obtaining a better understanding of the hurdles that various stakeholders may face in the successful development and commercialization of AT.

辅助技术(AT)的发展旨在提高残疾人和老年人的生活质量,但其发展和商业化可能面临挑战。这个集合的目的是为了更好地理解各种利益相关者在成功开发和商业化at时可能面临的障碍。
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引用次数: 0
Effect of cartilaginous rings in tracheal flow with stenosis. 软骨环对气管狭窄气流的影响
Pub Date : 2023-06-01 DOI: 10.1186/s42490-023-00068-4
Humberto Bocanegra Evans, Jose Montoya Segnini, Ali Doosttalab, Joehassin Cordero, Luciano Castillo

Background: In respiratory fluid dynamics research, it is typically assumed that the wall of the trachea is smooth. However, the trachea is structurally supported by a series of cartilaginous rings that create undulations on the wall surface, which introduce perturbations into the flow. Even though many studies use realistic Computer Tomography (CT) scan data to capture the complex geometry of the respiratory system, its limited spatial resolution does not resolve small features, including those introduced by the cartilaginous rings.

Results: Here we present an experimental comparison of two simplified trachea models with Grade II stenosis (70% blockage), one with smooth walls and second with cartilaginous rings. The use a unique refractive index-matching method provides unprecedented optical access and allowed us to perform non-intrusive velocity field measurements close to the wall (e.g., Particle Image Velocimetry (PIV)). Measurements were performed in a flow regime comparable to a resting breathing state (Reynolds number ReD = 3350). The cartilaginous rings induce velocity fluctuations in the downstream flow, enhancing the near-wall transport of momentum flux and thus reducing flow separation in the downstream flow. The maximum upstream velocity in the recirculation region is reduced by 38%, resulting in a much weaker recirculation zone- a direct consequence of the cartilaginous rings.

Conclusions: These results highlight the importance of the cartilaginous rings in respiratory flow studies and the mechanism to reduce flow separation in trachea stenosis.

背景:在呼吸流体动力学研究中,通常假定气管壁是光滑的。然而,气管在结构上由一系列软骨环支撑,这些软骨环会在管壁表面产生起伏,从而给气流带来扰动。尽管许多研究使用逼真的计算机断层扫描(CT)数据来捕捉呼吸系统复杂的几何形状,但其有限的空间分辨率无法分辨细小的特征,包括软骨环带来的特征:在此,我们对两个简化的气管模型进行了实验比较,一个是气管壁光滑的 II 级狭窄(堵塞 70%),另一个是软骨环。使用独特的折射率匹配方法提供了前所未有的光学通道,使我们能够在靠近管壁的地方进行非侵入式速度场测量(如粒子图像测速仪(PIV))。测量是在与静息呼吸状态(雷诺数 ReD = 3350)相当的流动状态下进行的。软骨环引起了下游流的速度波动,增强了动量通量的近壁传输,从而减少了下游流的流动分离。再循环区域的最大上游速度降低了 38%,导致再循环区域的强度大大减弱--这是软骨环的直接后果:这些结果凸显了软骨环在呼吸流动研究中的重要性,以及在气管狭窄中减少流动分离的机制。
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引用次数: 0
Optimization design of interdigitated microelectrodes with an insulation layer on the connection tracks to enhance efficiency of assessment of the cell viability. 在连接轨道上加绝缘层的交错微电极优化设计,提高细胞活力评估效率。
Pub Date : 2023-05-01 DOI: 10.1186/s42490-023-00070-w
Sameh Sherif, Yehya H Ghallab, Omnia AbdelRaheem, Laila Ziko, Rania Siam, Yehea Ismail

Background: Microelectrical Impedance Spectroscopy (µEIS) is a tiny device that utilizes fluid as a working medium in combination with biological cells to extract various electrical parameters. Dielectric parameters of biological cells are essential parameters that can be extracted using µEIS. µEIS has many advantages, such as portability, disposable sensors, and high-precision results.

Results: The paper compares different configurations of interdigitated microelectrodes with and without a passivation layer on the cell contact tracks. The influence of the number of electrodes on the enhancement of the extracted impedance for different types of cells was provided and discussed. Different types of cells are experimentally tested, such as viable and non-viable MCF7, along with different buffer solutions. This study confirms the importance of µEIS for in vivo and in vitro applications. An essential application of µEIS is to differentiate between the cells' sizes based on the measured capacitance, which is indirectly related to the cells' size. The extracted statistical values reveal the capability and sensitivity of the system to distinguish between two clusters of cells based on viability and size.

Conclusion: A completely portable and easy-to-use system, including different sensor configurations, was designed, fabricated, and experimentally tested. The system was used to extract the dielectric parameters of the Microbeads and MCF7 cells immersed in different buffer solutions. The high sensitivity of the readout circuit, which enables it to extract the difference between the viable and non-viable cells, was provided and discussed. The proposed system can extract and differentiate between different types of cells based on cells' sizes; two other polystyrene microbeads with different sizes are tested. Contamination that may happen was avoided using a Microfluidic chamber. The study shows a good match between the experiment and simulation results. The study also shows the optimum number of interdigitated electrodes that can be used to extract the variation in the dielectric parameters of the cells without leakage current or parasitic capacitance.

背景:微电阻抗谱(µEIS)是一种利用流体作为工作介质与生物细胞结合提取各种电参数的微型装置。生物细胞的介电参数是可以使用微EIS提取的重要参数。µEIS具有许多优点,如便携性、一次性传感器和高精度结果。结果:本文比较了在细胞接触轨迹上有钝化层和没有钝化层的交叉指状微电极的不同配置。给出并讨论了电极数目对不同类型细胞提取阻抗增强的影响。实验测试了不同类型的细胞,如有活力和无活力的MCF7,以及不同的缓冲溶液。该研究证实了微EIS在体内和体外应用中的重要性。µEIS的一个基本应用是根据测量的电容来区分电池的尺寸,这与电池的尺寸间接相关。提取的统计值揭示了系统根据活力和大小区分两组细胞的能力和灵敏度。结论:设计、制作和实验测试了一个完全便携、易于使用的系统,包括不同的传感器配置。该系统用于提取浸在不同缓冲溶液中的Microbeads和MCF7电池的介电参数。提供并讨论了读出电路的高灵敏度,使其能够提取活细胞和非活细胞之间的差异。该系统可以根据细胞的大小提取和区分不同类型的细胞;另外两种不同尺寸的聚苯乙烯微珠也进行了测试。使用微流控室避免了可能发生的污染。实验结果与仿真结果吻合较好。该研究还表明,在没有漏电流或寄生电容的情况下,可用于提取电池介电参数变化的最佳交叉电极数。
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引用次数: 1
Fourteen days free-living evaluation of an open-source algorithm for counting steps in healthy adults with a large variation in physical activity level. 对体力活动水平变化较大的健康成人计算步数的开源算法进行14天自由生活评估。
Pub Date : 2023-04-14 DOI: 10.1186/s42490-023-00071-9
Ivar Holm, Jonatan Fridolfsson, Mats Börjesson, Daniel Arvidsson

Background: The number of steps by an individual, has traditionally been assessed with a pedometer, but increasingly with an accelerometer. The ActiLife software (AL) is the most common way to process accelerometer data to steps, but it is not open source which could aid understanding of measurement errors. The aim of this study was to compare assessment of steps from the open-source algorithm part of the GGIR package and two closed algorithms, AL normal (n) and low frequency extension (lfe) algorithms to Yamax pedometer, as reference. Free-living in healthy adults with a wide range of activity level was studied.

Results: A total 46 participants divided by activity level into a low-medium active group and a high active group, wore both an accelerometer and a pedometer for 14 days. In total 614 complete days were analyzed. A significant correlation between Yamax and all three algorithms was shown but all comparisons were significantly different with paired t-tests except for ALn vs Yamax. The mean bias shows that ALn slightly overestimated steps in the low-medium active group and slightly underestimated steps in high active group. The mean percentage error (MAPE) was 17% and 9% respectively. The ALlfe overestimated steps by approximately 6700/day in both groups and the MAPE was 88% in the low-medium active group and 43% in the high active group. The open-source algorithm underestimated steps with a systematic error related to activity level. The MAPE was 28% in the low-medium active group and 48% in the high active group.

Conclusion: The open-source algorithm captures steps fairly well in low-medium active individuals when comparing with Yamax pedometer, but did not show satisfactory results in more active individuals, indicating that it must be modified before implemented in population research. The AL algorithm without the low frequency extension measures similar number of steps as Yamax in free-living and is a useful alternative before a valid open-source algorithm is available.

背景:一个人的步数,传统上是用计步器来评估的,但越来越多地使用加速度计。ActiLife软件(AL)是将加速度计数据处理为步骤的最常用方法,但它不是开源的,这可能有助于理解测量误差。本研究的目的是比较GGIR包的开源算法部分和两种封闭算法AL normal (n)和低频extension (lfe)算法对Yamax计步器的步数评估,作为参考。对自由生活的健康成人进行了广泛的活动水平研究。结果:46名参与者按活动水平分为中低活动组和高活动组,同时佩戴加速度计和计步器14天。总共分析了614个完整的天数。Yamax和所有三种算法之间显示出显著的相关性,但除了ALn与Yamax外,所有比较都与配对t检验有显著差异。平均偏倚表明,ALn在中低运动组中略高估步数,在高运动组中略低估步数。平均误差百分比(MAPE)分别为17%和9%。在两组中,ALlfe都高估了大约6700步/天,MAPE在中低活动组为88%,在高活动组为43%。开源算法低估了与活动水平相关的系统误差。中低运动组MAPE为28%,高运动组为48%。结论:与Yamax计步器相比,该开源算法在中低活动量个体上的步数捕获效果较好,但在高活动量个体上的步数捕获效果不理想,在人群研究中应用前需要对其进行改进。没有低频扩展的AL算法测量的步数与自由生活中的Yamax相似,在有效的开源算法可用之前是一个有用的替代方案。
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引用次数: 0
Parametric study of a bubble removing device for hemodialysis. 血液透析除泡装置的参数化研究。
Pub Date : 2023-04-01 DOI: 10.1186/s42490-023-00069-3
Poonnapa Chaichudchaval, Nunthapat Fuangkamonvet, Supajitra Piboonlapudom, Teeranoot Chanthasopeephan

Background: This paper sets out to design a device for removing bubbles during the process of hemodialysis. The concept is to guide the bubbles while traveling through the device and eventually the bubbles can be collected. The design focuses on the analysis of various parameters i.e. inlet diameter, inlet velocity and size of the pitch. The initial diameters of Models 1 and 2 have thread regions of 6 and 10 mm, respectively.

Parameters: Swirl number, Taylor number, Lift coefficient along with pressure field are also implemented.

Results: Based on computational fluid dynamics analysis, the bubbles' average maximum equilibrium position for Model 1 reached 1.995 mm, being greater than that of Model 2, which attained 1.833 mm. Then, 16,000 bubbles were released into Model 1 to validate the performance of the model. This number of bubbles is typically found in the dialysis. Thus, it was found that 81.53% of bubbles passed through the radial region of 2.20 ± 0.30 mm. The appropriate collecting plane was at 100 mm, as measured from the inlet position along the axial axis. The Taylor number, Lift coefficient, and Swirl number proved to be significant parameters for describing the movement of the bubbles. Results were based on multiple inlet velocities. It is seen that Model 3, the improved model with unequal pitch, reached a maximum equilibrium position of 2.24 mm.

Conclusion: Overall, results demonstrated that Model 1 was the best design compared to Models 2 and 3. Model 1 was found capable of guiding the bubbles to the edge location and did not generate extra bubbles. Thus, the parametric study, herein, can be used as a prototype for removing bubbles during the process of hemodialysis.

背景:本文设计了一种血液透析过程中去除气泡的装置。其原理是在气泡穿过设备的过程中引导气泡,最终将气泡收集起来。设计重点分析了各种参数,即进口直径,进口速度和螺距的大小。型号1和型号2的初始直径螺纹区域分别为6 mm和10 mm。参数:旋涡数,泰勒数,升力系数随压力场的变化。结果:基于计算流体力学分析,模型1的气泡平均最大平衡位置达到1.995 mm,大于模型2的平均最大平衡位置1.833 mm。然后,将16,000个气泡释放到模型1中,以验证模型的性能。这种数量的气泡通常在透析中发现。由此可知,81.53%的气泡通过了半径为2.20±0.30 mm的区域。从入口位置沿轴向测量,合适的收集平面为100mm。泰勒数、升力系数和旋流数是描述气泡运动的重要参数。结果基于多个入口速度。可以看出,非等节距改进模型模型3的最大平衡位置为2.24 mm。结论:总体而言,与模型2和模型3相比,模型1是最佳设计。模型1能够将气泡引导到边缘位置,并且不会产生额外的气泡。因此,本文的参数化研究可以作为血液透析过程中去除气泡的原型。
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引用次数: 0
Wavelet image scattering based glaucoma detection. 基于小波图像散射的青光眼检测。
Pub Date : 2023-03-02 DOI: 10.1186/s42490-023-00067-5
Hafeez Alani Agboola, Jesuloluwa Emmanuel Zaccheus

Background: The ever-growing need for cheap, simple, fast, and accurate healthcare solutions spurred a lot of research activities which are aimed at the reliable deployment of artificial intelligence in the medical fields. However, this has proved to be a daunting task especially when looking to make automated diagnoses using biomedical image data. Biomedical image data have complex patterns which human experts find very hard to comprehend. Against this backdrop, we applied a representation or feature learning algorithm: Invariant Scattering Convolution Network or Wavelet scattering Network to retinal fundus images and studied the the efficacy of the automatically extracted features therefrom for glaucoma diagnosis/detection. The influence of wavelet scattering network parameter settings as well as 2-D channel image type on the detection correctness is also examined. Our work is a distinct departure from the usual method where wavelet transform is applied to pre-processed retinal fundus images and handcrafted features are extracted from the decomposition results. Here, the RIM-ONE DL image dataset was fed into a wavelet scattering network developed in the Matlab environment to achieve a stage-wise decomposition process called wavelet scattering of the retinal fundus images thereby, automatically learning features from the images. These features were then used to build simple and computationally cheap classification algorithms.

Results: Maximum detection correctness of 98% was achieved on the held-out test set. Detection correctness is highly sensitive to scattering network parameter setting and 2-D channel image type.

Conclusion: A superficial comparison of the classification results obtained from our work and those obtained using a convolutional neural network underscores the potentiality of the proposed method for glaucoma detection.

背景:对廉价、简单、快速和准确的医疗保健解决方案日益增长的需求刺激了许多旨在将人工智能可靠地部署在医疗领域的研究活动。然而,这已被证明是一项艰巨的任务,特别是在寻求使用生物医学图像数据进行自动诊断时。生物医学图像数据具有复杂的模式,人类专家很难理解。在此背景下,我们将一种表征或特征学习算法:不变散射卷积网络或小波散射网络应用于视网膜眼底图像,并研究其自动提取的特征在青光眼诊断/检测中的有效性。研究了小波散射网络参数设置和二维通道图像类型对检测正确性的影响。我们的工作与通常的方法不同,通常的方法是将小波变换应用于预处理的视网膜眼底图像,并从分解结果中提取手工制作的特征。在这里,将RIM-ONE DL图像数据集输入到Matlab环境下开发的小波散射网络中,实现视网膜眼底图像的分阶段分解过程,称为小波散射,从而自动从图像中学习特征。然后使用这些特征来构建简单且计算成本低廉的分类算法。结果:在hold -out测试集上实现了98%的最大检测正确性。检测正确性对散射网络参数设置和二维通道图像类型高度敏感。结论:从我们的工作中获得的分类结果与使用卷积神经网络获得的分类结果进行表面比较,强调了所提出的青光眼检测方法的潜力。
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引用次数: 4
Experimental validation of a portable tidal volume indicator for bag valve mask ventilation. 用于袋阀面罩通气的便携式潮气量指示器的实验验证。
Pub Date : 2022-11-17 DOI: 10.1186/s42490-022-00066-y
Benjamin S Maxey, Luke A White, Giovanni F Solitro, Steven A Conrad, J Steven Alexander

Introduction: Short-term emergency ventilation is most typically accomplished through bag valve mask (BVM) techniques. BVMs like the AMBU® bag are cost-effective and highly portable but are also highly prone to user error, especially in high-stress emergent situations. Inaccurate and inappropriate ventilation has the potential to inflict great injury to patients through hyper- and hypoventilation. Here, we present the BVM Emergency Narration-Guided Instrument (BENGI) - a tidal volume feedback monitoring device that provides instantaneous visual and audio feedback on delivered tidal volumes, respiratory rates, and inspiratory/expiratory times. Providing feedback on the depth and regularity of respirations enables providers to deliver more consistent and accurate tidal volumes and rates. We describe the design, assembly, and validation of the BENGI as a practical tool to reduce manual ventilation-induced lung injury.

Methods: The prototype BENGI was assembled with custom 3D-printed housing and commercially available electronic components. A mass flow sensor in the central channel of the device measures air flow, which is used to calculate tidal volume. Tidal volumes are displayed via an LED ring affixed to the top of the BENGI. Additional feedback is provided through a speaker in the device. Central processing is accomplished through an Arduino microcontroller. Validation of the BENGI was accomplished using benchtop simulation with a clinical ventilator, BVM, and manikin test lung. Known respiratory quantities were delivered by the ventilator which were then compared to measurements from the BENGI to validate the accuracy of flow measurements, tidal volume calculations, and audio cue triggers.

Results: BENGI tidal volume measurements were found to lie within 4% of true delivered tidal volume values (95% CI of 0.53 to 3.7%) when breaths were delivered with 1-s inspiratory times, with similar performance for breaths delivered with 0.5-s inspiratory times (95% CI of 1.1 to 6.7%) and 2-s inspiratory times (95% CI of -1.1 to 2.3%). Audio cues "Bag faster" (1.84 to 2.03 s), "Bag slower" (0.35 to 0.41 s), and "Leak detected" (43 to 50%) were triggered close to target trigger values (2.00 s, 0.50 s, and 50%, respectively) across varying tidal volumes.

Conclusions: The BENGI achieved its proposed goals of accurately measuring and reporting tidal volumes delivered through BVM systems, providing immediate feedback on the quality of respiratory performance through audio and visual cues. The BENGI has the potential to reduce manual ventilation-induced lung injury and improve patient outcomes by providing accurate feedback on ventilatory parameters.

简介:短期紧急通气通常采用袋阀面罩 (BVM) 技术。AMBU® 袋等 BVM 具备成本效益和高度便携性,但也极易出现用户错误,尤其是在高压力的紧急情况下。不准确和不适当的通气有可能通过过度通气和低通气对患者造成巨大伤害。在此,我们介绍一种潮气量反馈监测设备--BVM 紧急叙述引导仪器(BENGI),该设备可提供潮气量、呼吸频率和吸气/呼气时间的即时视觉和音频反馈。通过对呼吸深度和规律性的反馈,医疗服务提供者可以提供更一致、更准确的潮气量和呼吸频率。我们介绍了 BENGI 的设计、组装和验证,它是减少人工通气引起的肺损伤的实用工具:BENGI 原型由定制的 3D 打印外壳和市售电子元件组装而成。设备中央通道上的质量流量传感器测量空气流量,用于计算潮气量。潮气量通过 BENGI 顶部的 LED 环显示。其他反馈通过设备中的扬声器提供。中央处理由 Arduino 微控制器完成。BENGI 的验证是通过使用临床呼吸机、BVM 和人体模型测试肺进行台式模拟完成的。呼吸机提供已知的呼吸量,然后与 BENGI 的测量结果进行比较,以验证流量测量、潮气量计算和音频提示触发的准确性:结果发现,当以 1 秒吸气时间进行呼吸时,BENGI 的潮气量测量值在真实输送潮气量值的 4% 范围内(95% CI 为 0.53 至 3.7%),而以 0.5 秒吸气时间(95% CI 为 1.1 至 6.7%)和 2 秒吸气时间(95% CI 为 -1.1 至 2.3%)进行呼吸时,BENGI 的测量结果与真实输送潮气量值相差无几。在不同潮气量下,音频提示 "袋快"(1.84 至 2.03 秒)、"袋慢"(0.35 至 0.41 秒)和 "检测到泄漏"(43 至 50%)的触发时间接近目标触发值(分别为 2.00 秒、0.50 秒和 50%):BENGI 实现了通过 BVM 系统准确测量和报告潮气量的预期目标,并通过声音和视觉提示提供了有关呼吸质量的即时反馈。BENGI 有可能减少人工通气引起的肺损伤,并通过提供准确的通气参数反馈改善患者预后。
{"title":"Experimental validation of a portable tidal volume indicator for bag valve mask ventilation.","authors":"Benjamin S Maxey, Luke A White, Giovanni F Solitro, Steven A Conrad, J Steven Alexander","doi":"10.1186/s42490-022-00066-y","DOIUrl":"10.1186/s42490-022-00066-y","url":null,"abstract":"<p><strong>Introduction: </strong>Short-term emergency ventilation is most typically accomplished through bag valve mask (BVM) techniques. BVMs like the AMBU<sup>®</sup> bag are cost-effective and highly portable but are also highly prone to user error, especially in high-stress emergent situations. Inaccurate and inappropriate ventilation has the potential to inflict great injury to patients through hyper- and hypoventilation. Here, we present the BVM Emergency Narration-Guided Instrument (BENGI) - a tidal volume feedback monitoring device that provides instantaneous visual and audio feedback on delivered tidal volumes, respiratory rates, and inspiratory/expiratory times. Providing feedback on the depth and regularity of respirations enables providers to deliver more consistent and accurate tidal volumes and rates. We describe the design, assembly, and validation of the BENGI as a practical tool to reduce manual ventilation-induced lung injury.</p><p><strong>Methods: </strong>The prototype BENGI was assembled with custom 3D-printed housing and commercially available electronic components. A mass flow sensor in the central channel of the device measures air flow, which is used to calculate tidal volume. Tidal volumes are displayed via an LED ring affixed to the top of the BENGI. Additional feedback is provided through a speaker in the device. Central processing is accomplished through an Arduino microcontroller. Validation of the BENGI was accomplished using benchtop simulation with a clinical ventilator, BVM, and manikin test lung. Known respiratory quantities were delivered by the ventilator which were then compared to measurements from the BENGI to validate the accuracy of flow measurements, tidal volume calculations, and audio cue triggers.</p><p><strong>Results: </strong>BENGI tidal volume measurements were found to lie within 4% of true delivered tidal volume values (95% CI of 0.53 to 3.7%) when breaths were delivered with 1-s inspiratory times, with similar performance for breaths delivered with 0.5-s inspiratory times (95% CI of 1.1 to 6.7%) and 2-s inspiratory times (95% CI of -1.1 to 2.3%). Audio cues \"Bag faster\" (1.84 to 2.03 s), \"Bag slower\" (0.35 to 0.41 s), and \"Leak detected\" (43 to 50%) were triggered close to target trigger values (2.00 s, 0.50 s, and 50%, respectively) across varying tidal volumes.</p><p><strong>Conclusions: </strong>The BENGI achieved its proposed goals of accurately measuring and reporting tidal volumes delivered through BVM systems, providing immediate feedback on the quality of respiratory performance through audio and visual cues. The BENGI has the potential to reduce manual ventilation-induced lung injury and improve patient outcomes by providing accurate feedback on ventilatory parameters.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":" ","pages":"9"},"PeriodicalIF":0.0,"publicationDate":"2022-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9668705/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40706274","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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BMC biomedical engineering
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