Pub Date : 2025-08-01DOI: 10.1186/s42490-025-00095-3
Mohammad Hasan Shahriari, Farkhondeh Asadi, Hamid Moghaddasi, Arash Roshanpour, Farideh Sharifipour, Zahra Khorrami
Glaucoma is a leading cause of irreversible blindness, necessitating early and accurate diagnosis to prevent vision loss. Traditional diagnostic methods often suffer from subjectivity and variability, emphasizing the need for more reliable approaches. This study evaluates the application of machine learning (ML) techniques in glaucoma diagnosis, analyzing their effectiveness and identifying the most promising methods and datasets. A systematic review of five major databases was conducted, selecting 35 studies based on predefined criteria. The findings reveal that structured data, including optical coherence tomography (OCT), visual field (VF) tests, and demographic factors, significantly enhance diagnostic accuracy. ML models such as support vector machine (SVM), deep learning (DL), random forest, and ensemble methods demonstrated accuracy ranging from 76 to 98.3%, with AUC values between 52.5% and 99%. Despite these advancements, challenges such as data imbalance and limited sample sizes impact model generalizability. The results highlight the potential of ML to improve glaucoma detection, though further research is needed to enhance data quality and model validation for broader clinical applicability.
{"title":"Applications of machine learning in glaucoma diagnosis based on tabular data: a systematic review.","authors":"Mohammad Hasan Shahriari, Farkhondeh Asadi, Hamid Moghaddasi, Arash Roshanpour, Farideh Sharifipour, Zahra Khorrami","doi":"10.1186/s42490-025-00095-3","DOIUrl":"10.1186/s42490-025-00095-3","url":null,"abstract":"<p><p>Glaucoma is a leading cause of irreversible blindness, necessitating early and accurate diagnosis to prevent vision loss. Traditional diagnostic methods often suffer from subjectivity and variability, emphasizing the need for more reliable approaches. This study evaluates the application of machine learning (ML) techniques in glaucoma diagnosis, analyzing their effectiveness and identifying the most promising methods and datasets. A systematic review of five major databases was conducted, selecting 35 studies based on predefined criteria. The findings reveal that structured data, including optical coherence tomography (OCT), visual field (VF) tests, and demographic factors, significantly enhance diagnostic accuracy. ML models such as support vector machine (SVM), deep learning (DL), random forest, and ensemble methods demonstrated accuracy ranging from 76 to 98.3%, with AUC values between 52.5% and 99%. Despite these advancements, challenges such as data imbalance and limited sample sizes impact model generalizability. The results highlight the potential of ML to improve glaucoma detection, though further research is needed to enhance data quality and model validation for broader clinical applicability.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"9"},"PeriodicalIF":0.0,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12315471/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144762526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-07-01DOI: 10.1186/s42490-025-00094-4
Fatma Akalın, Pınar Dervişoğlu Çavdaroğlu, Mehmet Fatih Orhan
Electrocardiography (ECG) is a non-invasive tool used to identify abnormalities in heart rhythm. It is used to evaluate dysfunctions in the electrical system of the heart. It offers a mechanism that does not cause any harm to patients. Being affordable makes it accessible. It provides a comprehensive assessment of the condition of the heart. Although it provides a successful analysis opportunity for arrhythmia detection, it is time-consuming and depends on the clinician's experience. In addition, since the ECG patterns in pediatric patients are different from the ECG patterns in adults, physicians consider it a difficult and complex task. For this reason, a custom dataset of pediatric patients was created in this study. This dataset consists of 1318 abnormal beats and 1403 normal beats. MobileNetv2 transfer learning architecture was used to classify this balanced dataset. However, the stability of the results is a valuable. Therefore, the optimization algorithm that minimizes the loss function and the regularization method that controls the complexity of the model are proposed. In this direction, Proposed Optimization Algorithm V5 and Proposed Regularization Method V5 approaches have been integrated into the MobileNetv2 transfer learning model. The accuracy rates produced in the training and test datasets are 0.9801 and 0.9509, respectively. These results have acceptable improvement and stability compared to the accuracies of 0.9633 and 0.9399 produced by the original MobileNetv2 architecture on the training and test dataset, respectively. However, performance values provide limited information about the generalizability of the model. Therefore, the same processes were repeated on a more complex dataset with 6 categories. As a result of the classification, the accuracy rates for the training and test data sets were obtained as 0.9200% and 0.8975%, respectively. Training was performed under the same conditions as the training performed on 2-category datasets. Therefore, it is normal for the test dataset to experience a decrease of approximately 5%. The results obtained show that generalizations can be made for comprehensive, highly diverse and rich datasets.
{"title":"Arrhythmia detection with transfer learning architecture integrating the developed optimization algorithm and regularization method.","authors":"Fatma Akalın, Pınar Dervişoğlu Çavdaroğlu, Mehmet Fatih Orhan","doi":"10.1186/s42490-025-00094-4","DOIUrl":"10.1186/s42490-025-00094-4","url":null,"abstract":"<p><p>Electrocardiography (ECG) is a non-invasive tool used to identify abnormalities in heart rhythm. It is used to evaluate dysfunctions in the electrical system of the heart. It offers a mechanism that does not cause any harm to patients. Being affordable makes it accessible. It provides a comprehensive assessment of the condition of the heart. Although it provides a successful analysis opportunity for arrhythmia detection, it is time-consuming and depends on the clinician's experience. In addition, since the ECG patterns in pediatric patients are different from the ECG patterns in adults, physicians consider it a difficult and complex task. For this reason, a custom dataset of pediatric patients was created in this study. This dataset consists of 1318 abnormal beats and 1403 normal beats. MobileNetv2 transfer learning architecture was used to classify this balanced dataset. However, the stability of the results is a valuable. Therefore, the optimization algorithm that minimizes the loss function and the regularization method that controls the complexity of the model are proposed. In this direction, Proposed Optimization Algorithm V5 and Proposed Regularization Method V5 approaches have been integrated into the MobileNetv2 transfer learning model. The accuracy rates produced in the training and test datasets are 0.9801 and 0.9509, respectively. These results have acceptable improvement and stability compared to the accuracies of 0.9633 and 0.9399 produced by the original MobileNetv2 architecture on the training and test dataset, respectively. However, performance values provide limited information about the generalizability of the model. Therefore, the same processes were repeated on a more complex dataset with 6 categories. As a result of the classification, the accuracy rates for the training and test data sets were obtained as 0.9200% and 0.8975%, respectively. Training was performed under the same conditions as the training performed on 2-category datasets. Therefore, it is normal for the test dataset to experience a decrease of approximately 5%. The results obtained show that generalizations can be made for comprehensive, highly diverse and rich datasets.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"8"},"PeriodicalIF":0.0,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12211762/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144531334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Gait kinetics explains dynamics of gait deviations, which inform surgical and non-surgical clinical-decision-making to enhance walking performance of children with cerebral palsy. Kinetic gait profile of children with lesser crouch angle is known; however lower-extremity gait kinetics of ambulatory children at a further continuum of the spectrum with greater crouch angle is unclear. Therefore, present cross-sectional study evaluated influence of varying crouch angle on gait kinetics and walk distance.
Method: Following ethical approval and signed informed consent of parents, 3-D gait of 33 ambulatory children with CP(10.4 year) and 31 age-matched typically-developing children was studied to compute the magnitude and timing of lower-extremity external net joint moments and power during stance phase. An average of 3gait trials walked bare-feet at self-selected pace was considered for analyses. Walk distance was measured with 2-min walk test. Typically developing children were classified as Group I, children with mild crouch-angle (mean knee flexion angle during stance)[Formula: see text]16.80and ≤ 250 were classified as Group II(n = 17), whereas children with severe crouch-angle i.e.[Formula: see text] 250 throughout stance phase were classified as Group III(n = 16). Three groups were compared with one-way-ANOVA(p ≤ 0.05). Bonferroni adjustment was made for post-hoc analyses (p ≤ 0.01).
Results: Gait speed, cadence and 2-minute walk distance decreased from Group I to II to III(p ≤ 0.01). Hip flexion, extension and adduction; knee flexion and ankle dorsiflexion moments were significantly different between three groups(p ≤ 0.01)). Rise in crouch-angle was associated with an increase in peak hip flexion moment and increase in power generated at hip and decrease in power generated at knee and ankle (p ≤ 0.01). The timing of peak hip and knee moments during stance phase also differed across the 3 groups (p ≤ 0.01) indicating a delay in the occurrence of peak hip flexion-extension; abduction-adduction and knee flexion moment with a rise in crouch angle.
Conclusion: Present findings inform lower-extremity joint kinetics during gait across the spectrum of mild to severe crouch angle with reference to typically-developing children. Precise knowledge of magnitude and pattern of net joint moments and power along with the timing of moments and decline in walking distance in children with severe crouch, can guide therapeutic interventions to restore the optimum dynamic lever arm function for improved walking performance.
{"title":"Influence of crouch angle on lower-extremity kinetic gait profile and walk distance in children with cerebral palsy: a cross-sectional study.","authors":"Rajani Mullerpatan, Triveni Shetty, Sailakshmi Ganesan, Ashok Johari","doi":"10.1186/s42490-025-00093-5","DOIUrl":"10.1186/s42490-025-00093-5","url":null,"abstract":"<p><strong>Background: </strong>Gait kinetics explains dynamics of gait deviations, which inform surgical and non-surgical clinical-decision-making to enhance walking performance of children with cerebral palsy. Kinetic gait profile of children with lesser crouch angle is known; however lower-extremity gait kinetics of ambulatory children at a further continuum of the spectrum with greater crouch angle is unclear. Therefore, present cross-sectional study evaluated influence of varying crouch angle on gait kinetics and walk distance.</p><p><strong>Method: </strong>Following ethical approval and signed informed consent of parents, 3-D gait of 33 ambulatory children with CP(10.4 year) and 31 age-matched typically-developing children was studied to compute the magnitude and timing of lower-extremity external net joint moments and power during stance phase. An average of 3gait trials walked bare-feet at self-selected pace was considered for analyses. Walk distance was measured with 2-min walk test. Typically developing children were classified as Group I, children with mild crouch-angle (mean knee flexion angle during stance)[Formula: see text]16.8<sup>0</sup>and ≤ 25<sup>0</sup> were classified as Group II(n = 17), whereas children with severe crouch-angle i.e.[Formula: see text] 25<sup>0</sup> throughout stance phase were classified as Group III(n = 16). Three groups were compared with one-way-ANOVA(p ≤ 0.05). Bonferroni adjustment was made for post-hoc analyses (p ≤ 0.01).</p><p><strong>Results: </strong>Gait speed, cadence and 2-minute walk distance decreased from Group I to II to III(p ≤ 0.01). Hip flexion, extension and adduction; knee flexion and ankle dorsiflexion moments were significantly different between three groups(p ≤ 0.01)). Rise in crouch-angle was associated with an increase in peak hip flexion moment and increase in power generated at hip and decrease in power generated at knee and ankle (p ≤ 0.01). The timing of peak hip and knee moments during stance phase also differed across the 3 groups (p ≤ 0.01) indicating a delay in the occurrence of peak hip flexion-extension; abduction-adduction and knee flexion moment with a rise in crouch angle.</p><p><strong>Conclusion: </strong>Present findings inform lower-extremity joint kinetics during gait across the spectrum of mild to severe crouch angle with reference to typically-developing children. Precise knowledge of magnitude and pattern of net joint moments and power along with the timing of moments and decline in walking distance in children with severe crouch, can guide therapeutic interventions to restore the optimum dynamic lever arm function for improved walking performance.</p><p><strong>Trial registration: </strong>CTRI registration no. CTRI/22/12/048524/27/12/2022.</p><p><strong>Trial registry: </strong>CTRI/22/12.</p><p><strong>Trial registration number: </strong>048524. Trial registration date: 27th December 2022.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"7"},"PeriodicalIF":0.0,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12211203/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144531335","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-02DOI: 10.1186/s42490-025-00092-6
Paul Potgieter, Lukas Linde, Petra van Blerk, Corlius Fourie Birkill
Transmission of electrical impulses along axons is commonly modelled with the cable equation, which neglects the inductive effects that have been measured in nerves. By using the telegrapher's equations, it is possible to incorporate inductive effects and compare with the non-inductive case. Although both of these approaches have been extensively studied, the question remains as to which of these provides a more accurate model of human physiology. Many of the electrical properties of nerves are frequency-dependent, a fact which is not very relevant in a low-frequency domain, but which becomes salient when higher frequencies are considered, and necessitates the exploration of the magnitude of their effects. We compare the effects of both inductance and other variable parameters across a wide frequency range using both the cable equation and the telegrapher's equations, demonstrating that it is possible for axons to transmit high-frequency signals much more effectively than might be expected, especially in the absence of an action potential. This implies that the high-frequency domain necessitates use of the more complete model.
{"title":"High-frequency signals: a comparison between the cable equation and telegrapher's equations in nerves.","authors":"Paul Potgieter, Lukas Linde, Petra van Blerk, Corlius Fourie Birkill","doi":"10.1186/s42490-025-00092-6","DOIUrl":"10.1186/s42490-025-00092-6","url":null,"abstract":"<p><p>Transmission of electrical impulses along axons is commonly modelled with the cable equation, which neglects the inductive effects that have been measured in nerves. By using the telegrapher's equations, it is possible to incorporate inductive effects and compare with the non-inductive case. Although both of these approaches have been extensively studied, the question remains as to which of these provides a more accurate model of human physiology. Many of the electrical properties of nerves are frequency-dependent, a fact which is not very relevant in a low-frequency domain, but which becomes salient when higher frequencies are considered, and necessitates the exploration of the magnitude of their effects. We compare the effects of both inductance and other variable parameters across a wide frequency range using both the cable equation and the telegrapher's equations, demonstrating that it is possible for axons to transmit high-frequency signals much more effectively than might be expected, especially in the absence of an action potential. This implies that the high-frequency domain necessitates use of the more complete model.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"6"},"PeriodicalIF":0.0,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12128527/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144200873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: The aim of this study was to produce ultrasmall superparamagnetic iron oxide (USPIO) nanoparticles (NPs) conjugated to the FROP-1 peptide for targeted magnetic resonance imaging (MRI) of breast cancer cell lines and to evaluate its application as a specific and targeted T1-weighted MR imaging contrast agent in vitro. Sodium citrate-stabilized Fe3O4 NPs were conjugated with the FROP-1 peptide by 1-ethyl-3-(3-dimethylaminopropyl) carbide diamide hydrochloride (EDC) to form a novel Fe3O4@FROP-1 specific target contrast agent. The specificity and targeting of Fe3O4@FROP-1 to bind FROP-1 receptors were investigated in vitro by cellular uptake and cellular MR imaging.
Results: In this study, the synthesis of water-soluble ultrasmall Fe3O4 NPs was performed by the co-precipitation method. XRD, TEM, and VSM analyses showed the formation of the Fe3O4 NPs with an average size of about 3.78 ± 0.2 nm. FT-IR spectroscopy approved the conjugation of the FROP-1 peptide with the Fe3O4 NPs. The synthesized Fe3O4@FROP-1 NPs showed good biocompatibility, and the high r1 relaxivity and r2/r1, respectively, were 2.608 mM- 1S- 1 and 1.18. The biocompatibility of the Fe3O4 and Fe3O4@FROP-1 NPs on the MCF-7, SKBR-3, MDA-MB-231, and MCF-10 cell lines was determined using cytotoxicity analysis. The specific targeting effect on the cells was verified by in vitro cellular uptake and cell MR imaging.
Conclusion: It was found that the contrast intensity of the Fe3O4@FROP-1 nanoprobe increases as Fe concentration increases. Cellular uptake of the Fe3O4 and Fe3O4@FROP-1 NPs was quantified using ICP-MS. The synthesized NPs had better imaging performance than Dotarem (gadoterate meglumine). The findings showed that Fe3O4@FROP-1 NPs have potential utility as a specific and targeted T1-weighted contrast agent in breast cancer MR imaging.
{"title":"FROP-1 peptide-conjugated ultrasmall superparamagnetic nanoparticles as a targeted T1-weighted MR contrast agent for breast cancer: in vitro study.","authors":"Melika Samari, Zahra Alamzadeh, Rasoul Irajirad, Abolfazl Sarikhani, Vahid Pirhajati Mahabadi, Habib Ghaznavi, Samideh Khoei","doi":"10.1186/s42490-025-00091-7","DOIUrl":"https://doi.org/10.1186/s42490-025-00091-7","url":null,"abstract":"<p><strong>Background: </strong>The aim of this study was to produce ultrasmall superparamagnetic iron oxide (USPIO) nanoparticles (NPs) conjugated to the FROP-1 peptide for targeted magnetic resonance imaging (MRI) of breast cancer cell lines and to evaluate its application as a specific and targeted T1-weighted MR imaging contrast agent in vitro. Sodium citrate-stabilized Fe<sub>3</sub>O<sub>4</sub> NPs were conjugated with the FROP-1 peptide by 1-ethyl-3-(3-dimethylaminopropyl) carbide diamide hydrochloride (EDC) to form a novel Fe<sub>3</sub>O<sub>4</sub>@FROP-1 specific target contrast agent. The specificity and targeting of Fe<sub>3</sub>O<sub>4</sub>@FROP-1 to bind FROP-1 receptors were investigated in vitro by cellular uptake and cellular MR imaging.</p><p><strong>Results: </strong>In this study, the synthesis of water-soluble ultrasmall Fe<sub>3</sub>O<sub>4</sub> NPs was performed by the co-precipitation method. XRD, TEM, and VSM analyses showed the formation of the Fe<sub>3</sub>O<sub>4</sub> NPs with an average size of about 3.78 ± 0.2 nm. FT-IR spectroscopy approved the conjugation of the FROP-1 peptide with the Fe<sub>3</sub>O<sub>4</sub> NPs. The synthesized Fe<sub>3</sub>O<sub>4</sub>@FROP-1 NPs showed good biocompatibility, and the high r1 relaxivity and r2/r1, respectively, were 2.608 mM<sup>- 1</sup>S<sup>- 1</sup> and 1.18. The biocompatibility of the Fe<sub>3</sub>O<sub>4</sub> and Fe<sub>3</sub>O<sub>4</sub>@FROP-1 NPs on the MCF-7, SKBR-3, MDA-MB-231, and MCF-10 cell lines was determined using cytotoxicity analysis. The specific targeting effect on the cells was verified by in vitro cellular uptake and cell MR imaging.</p><p><strong>Conclusion: </strong>It was found that the contrast intensity of the Fe<sub>3</sub>O<sub>4</sub>@FROP-1 nanoprobe increases as Fe concentration increases. Cellular uptake of the Fe<sub>3</sub>O<sub>4</sub> and Fe<sub>3</sub>O<sub>4</sub>@FROP-1 NPs was quantified using ICP-MS. The synthesized NPs had better imaging performance than Dotarem (gadoterate meglumine). The findings showed that Fe<sub>3</sub>O<sub>4</sub>@FROP-1 NPs have potential utility as a specific and targeted T1-weighted contrast agent in breast cancer MR imaging.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"5"},"PeriodicalIF":0.0,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12044754/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144047320","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-04-02DOI: 10.1186/s42490-025-00089-1
Rabih Assaf, Abbas Rammal, Alban Goupil, Mohammad Kacim, Valeriu Vrabie
COVID-19 has claimed the lives of thousands over the past years. Although pathogenic laboratory testing is the established standard, it carries a significant drawback with a notable rate of false negatives. Consequently, there is an urgent need for alternative diagnostic approaches to combat this threat. In response to this pressing need for accurate and parameter-free methods for COVID-19 identification, particularly within lung images, we introduce a novel approach that combines the principles of topological data analysis with the capabilities of machine learning. Our proposed methodology entails the extraction of persistent homology features from lung images, effectively capturing the intrinsic topological properties inherent in the data. These extracted persistent homology features then serve as inputs for various machine learning methods employed for classification purposes. Our primary objective is to achieve exceptional accuracy in the detection of COVID-19 all while showcasing the effectiveness of these topological features. The experimental results demonstrate that the Random Forest Classifier and the Support Vector Machine models outperform the rest, showcasing their effectiveness in classifying CT scan lung images with remarkable precision-an accuracy rate of 97.5% for the Random Forest model and an AUC score that surpasses 0.99 for the SVM. Results of the model on the same data after exclusion of the topological features and on other data with application of the same model with topological features showed the efficiency of these features in the classification task.
{"title":"Topological data analysis and machine learning for COVID-19 detection in CT scan lung images.","authors":"Rabih Assaf, Abbas Rammal, Alban Goupil, Mohammad Kacim, Valeriu Vrabie","doi":"10.1186/s42490-025-00089-1","DOIUrl":"10.1186/s42490-025-00089-1","url":null,"abstract":"<p><p>COVID-19 has claimed the lives of thousands over the past years. Although pathogenic laboratory testing is the established standard, it carries a significant drawback with a notable rate of false negatives. Consequently, there is an urgent need for alternative diagnostic approaches to combat this threat. In response to this pressing need for accurate and parameter-free methods for COVID-19 identification, particularly within lung images, we introduce a novel approach that combines the principles of topological data analysis with the capabilities of machine learning. Our proposed methodology entails the extraction of persistent homology features from lung images, effectively capturing the intrinsic topological properties inherent in the data. These extracted persistent homology features then serve as inputs for various machine learning methods employed for classification purposes. Our primary objective is to achieve exceptional accuracy in the detection of COVID-19 all while showcasing the effectiveness of these topological features. The experimental results demonstrate that the Random Forest Classifier and the Support Vector Machine models outperform the rest, showcasing their effectiveness in classifying CT scan lung images with remarkable precision-an accuracy rate of 97.5% for the Random Forest model and an AUC score that surpasses 0.99 for the SVM. Results of the model on the same data after exclusion of the topological features and on other data with application of the same model with topological features showed the efficiency of these features in the classification task.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"4"},"PeriodicalIF":0.0,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11963280/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143765939","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-03DOI: 10.1186/s42490-025-00090-8
Jorge R Cibrão, Miguel Armada, Marta F Lima, André Vidinha-Mira, Jonas Campos, Tiffany S Pinho, António J Salgado, Alar Ainla, Nuna A Silva
Background: Exposure to electric fields affects cell membranes impacting their potential and altering cellular excitability, nerve transmission, or muscle contraction. Furthermore, electric stimulation influences cell communication, migration, proliferation, and differentiation, with potential therapeutic applications. In vitro platforms for electrical stimulation are valuable tools for studying these effects and advancing medical research. In this study, we developed and tested a novel multi-channel in vitro electrical stimulator designed for cellular applications. The device aims to facilitate research on the effects of electrical stimulation (ES) on cellular processes, providing a versatile platform that is easy to reproduce and implement in various laboratory settings.
Methods: The stimulator was designed to be simple, cost-effective, and versatile, fitting on standard 12-well plates for parallel experimentation. Extensive testing was conducted to evaluate the performance of the stimulator, including 3D finite element modelling to analyse electric field distribution. Moreover, the stimulator was evaluated in vitro using neuronal and stem cell cultures.
Results: Finite element modelling confirmed that the electric field was sufficiently homogeneous within the stimulation zone, though liquid volume affected field strength. A custom controller was developed to program stimulation protocols, ensuring precise and adjustable current delivery up to 160 V/m. ES promoted neurite outgrowth when applied to SH-SY5Y neural cells or to primary spinal cord-derived cells. In human neuronal progenitor cells (hNPCs), ES enhanced neurite growth as well as differentiation into neurons. In adipose stem cells (ASCs), ES altered the secretome, enriching it in molecules that promoted hNPC differentiation into neurons without enhancing neurite growth.
Conclusions: Our results highlight the potential of this multi-channel electrical stimulator as a valuable tool for advancing the understanding of ES mechanisms and its therapeutic applications. The simplicity and adaptability of this novel platform make it a promising addition to the toolkit of researchers studying electrical stimulation in cellular models.
{"title":"Development and application of a novel multi-channel in vitro electrical stimulator for cellular research.","authors":"Jorge R Cibrão, Miguel Armada, Marta F Lima, André Vidinha-Mira, Jonas Campos, Tiffany S Pinho, António J Salgado, Alar Ainla, Nuna A Silva","doi":"10.1186/s42490-025-00090-8","DOIUrl":"10.1186/s42490-025-00090-8","url":null,"abstract":"<p><strong>Background: </strong>Exposure to electric fields affects cell membranes impacting their potential and altering cellular excitability, nerve transmission, or muscle contraction. Furthermore, electric stimulation influences cell communication, migration, proliferation, and differentiation, with potential therapeutic applications. In vitro platforms for electrical stimulation are valuable tools for studying these effects and advancing medical research. In this study, we developed and tested a novel multi-channel in vitro electrical stimulator designed for cellular applications. The device aims to facilitate research on the effects of electrical stimulation (ES) on cellular processes, providing a versatile platform that is easy to reproduce and implement in various laboratory settings.</p><p><strong>Methods: </strong>The stimulator was designed to be simple, cost-effective, and versatile, fitting on standard 12-well plates for parallel experimentation. Extensive testing was conducted to evaluate the performance of the stimulator, including 3D finite element modelling to analyse electric field distribution. Moreover, the stimulator was evaluated in vitro using neuronal and stem cell cultures.</p><p><strong>Results: </strong>Finite element modelling confirmed that the electric field was sufficiently homogeneous within the stimulation zone, though liquid volume affected field strength. A custom controller was developed to program stimulation protocols, ensuring precise and adjustable current delivery up to 160 V/m. ES promoted neurite outgrowth when applied to SH-SY5Y neural cells or to primary spinal cord-derived cells. In human neuronal progenitor cells (hNPCs), ES enhanced neurite growth as well as differentiation into neurons. In adipose stem cells (ASCs), ES altered the secretome, enriching it in molecules that promoted hNPC differentiation into neurons without enhancing neurite growth.</p><p><strong>Conclusions: </strong>Our results highlight the potential of this multi-channel electrical stimulator as a valuable tool for advancing the understanding of ES mechanisms and its therapeutic applications. The simplicity and adaptability of this novel platform make it a promising addition to the toolkit of researchers studying electrical stimulation in cellular models.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2025-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11874659/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143538000","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01DOI: 10.1186/s42490-025-00088-2
Lin Wang, Zizhang Luo, Tianle Zhang
Aim: The aim of this study is to apply a novel hybrid framework incorporating a Vision Transformer (ViT) and bidirectional long short-term memory (Bi-LSTM) model for classifying physical activity intensity (PAI) in adults using gravity-based acceleration. Additionally, it further investigates how PAI and temporal window (TW) impacts the model' s accuracy.
Method: This research used the Capture-24 dataset, consisting of raw accelerometer data from 151 participants aged 18 to 91. Gravity-based acceleration was utilised to generate images encoding various PAIs. These images were subsequently analysed using the ViT-BiLSTM model, with results presented in confusion matrices and compared with baseline models. The model's robustness was evaluated through temporal stability testing and examination of accuracy and loss curves.
Result: The ViT-BiLSTM model excelled in PAI classification task, achieving an overall accuracy of 98.5% ± 1.48% across five TWs-98.7% for 1s, 98.1% for 5s, 98.2% for 10s, 99% for 15s, and 98.65% for 30s of TW. The model consistently exhibited superior accuracy in predicting sedentary (98.9% ± 1%) compared to light physical activity (98.2% ± 2%) and moderate-to-vigorous physical activity (98.2% ± 3%). ANOVA showed no significant accuracy variation across PAIs (F = 2.18, p = 0.13) and TW (F = 0.52, p = 0.72). Accuracy and loss curves show the model consistently improves its performance across epochs, demonstrating its excellent robustness.
Conclusion: This study demonstrates the ViT-BiLSTM model's efficacy in classifying PAI using gravity-based acceleration, with performance remaining consistent across diverse TWs and intensities. However, PAI and TW could result in slight variations in the model's performance. Future research should concern and investigate the impact of gravity-based acceleration on PAI thresholds, which may influence model's robustness and reliability.
目的:本研究的目的是应用一种新的混合框架,结合视觉变压器(ViT)和双向长短期记忆(Bi-LSTM)模型,在基于重力加速度的成人运动强度(PAI)分类中进行研究。此外,本文还进一步探讨了PAI和时间窗对模型精度的影响。方法:本研究使用了Capture-24数据集,由151名年龄在18岁至91岁之间的参与者的原始加速度计数据组成。利用基于重力的加速度来生成编码各种PAIs的图像。随后使用ViT-BiLSTM模型对这些图像进行分析,结果显示在混淆矩阵中,并与基线模型进行比较。模型的稳健性通过时间稳定性测试和准确性和损失曲线的检验来评估。结果:ViT-BiLSTM模型在PAI分类任务中表现优异,5个TW的总体准确率为98.5%±1.48%,对TW的15秒分类准确率为98.7%,对5秒分类准确率为98.1%,对10秒分类准确率为98.2%,对15秒分类准确率为99%,对30秒分类准确率为98.65%。与轻度体力活动(98.2%±2%)和中度至剧烈体力活动(98.2%±3%)相比,该模型在预测久坐(98.9%±1%)方面始终表现出更高的准确性。方差分析显示PAIs (F = 2.18, p = 0.13)和TW (F = 0.52, p = 0.72)之间的准确性无显著差异。精度和损失曲线表明,该模型在不同时期的性能持续提高,显示出良好的鲁棒性。结论:本研究证明了ViT-BiLSTM模型对基于重力加速度的PAI进行分类的有效性,并且在不同的TWs和强度下性能保持一致。然而,PAI和TW可能会导致模型性能的轻微变化。未来的研究应该关注和研究重力加速度对PAI阈值的影响,这可能会影响模型的鲁棒性和可靠性。
{"title":"A novel ViT-BILSTM model for physical activity intensity classification in adults using gravity-based acceleration.","authors":"Lin Wang, Zizhang Luo, Tianle Zhang","doi":"10.1186/s42490-025-00088-2","DOIUrl":"10.1186/s42490-025-00088-2","url":null,"abstract":"<p><strong>Aim: </strong>The aim of this study is to apply a novel hybrid framework incorporating a Vision Transformer (ViT) and bidirectional long short-term memory (Bi-LSTM) model for classifying physical activity intensity (PAI) in adults using gravity-based acceleration. Additionally, it further investigates how PAI and temporal window (TW) impacts the model' s accuracy.</p><p><strong>Method: </strong>This research used the Capture-24 dataset, consisting of raw accelerometer data from 151 participants aged 18 to 91. Gravity-based acceleration was utilised to generate images encoding various PAIs. These images were subsequently analysed using the ViT-BiLSTM model, with results presented in confusion matrices and compared with baseline models. The model's robustness was evaluated through temporal stability testing and examination of accuracy and loss curves.</p><p><strong>Result: </strong>The ViT-BiLSTM model excelled in PAI classification task, achieving an overall accuracy of 98.5% ± 1.48% across five TWs-98.7% for 1s, 98.1% for 5s, 98.2% for 10s, 99% for 15s, and 98.65% for 30s of TW. The model consistently exhibited superior accuracy in predicting sedentary (98.9% ± 1%) compared to light physical activity (98.2% ± 2%) and moderate-to-vigorous physical activity (98.2% ± 3%). ANOVA showed no significant accuracy variation across PAIs (F = 2.18, p = 0.13) and TW (F = 0.52, p = 0.72). Accuracy and loss curves show the model consistently improves its performance across epochs, demonstrating its excellent robustness.</p><p><strong>Conclusion: </strong>This study demonstrates the ViT-BiLSTM model's efficacy in classifying PAI using gravity-based acceleration, with performance remaining consistent across diverse TWs and intensities. However, PAI and TW could result in slight variations in the model's performance. Future research should concern and investigate the impact of gravity-based acceleration on PAI thresholds, which may influence model's robustness and reliability.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11786420/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143076652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-02DOI: 10.1186/s42490-024-00087-9
Georgia E H Robles, David A Nelson
Background: The ST response to high frequency EM heating may give an indication of rate of BF in underlying tissue. This novel method, which we have termed REFLO (Rapid Electromagnetic Flow) has potential for applications such as detection of PAD. The method utilizes the relationship between blood flow rate and tissue temperature increase during exposure to radio frequency (RF) energy. We are developing an REFLO device to screen for peripheral artery disease (PAD). PAD is characterized by impaired blood flow to the legs, as reflected in the skin microcirculation. The REFLO system incorporates a radio frequency transmitter and a compact transducer housing a micropatch antenna and an infrared (IR) temperature sensor. At high RF frequencies (> 6 GHz) tissue heating is confined to the skin, such that an indication of blood flow may be inferred from the temperature response to controlled heating. The objective of this study is to determine the extent to which the magnitude and depth of heating as well as device sensitivity are functions of (i) RF frequency and (ii) thickness of the dermal tissue layer.
Results: Results show that it is feasible to measure blood flow rate with REFLO technology. Surface temperature increases were found to be more dependent upon the magnitude of power absorption than location of absorption within the skin. While surface temperature response does depend upon radio wave frequency and thickness of the dermis layer, such dependencies are mild. Sensitivity to blood flow rate was found to be proportional to the magnitude of absorbed power.
Conclusion: Results show that it is feasible to discriminate between blood flow rates using REFLO technology at frequencies within the 10-94 GHz range. All frequencies analyzed produced similar levels of sensitivity to blood flow rate despite significant differences in penetration depth. These results are being used in the development of a preclinical prototype for quick and easy detection of asymptomatic PAD in humans.
{"title":"Relationship between skin temperature and blood flow during exposure to radio frequency energy: implications for device development.","authors":"Georgia E H Robles, David A Nelson","doi":"10.1186/s42490-024-00087-9","DOIUrl":"10.1186/s42490-024-00087-9","url":null,"abstract":"<p><strong>Background: </strong>The ST response to high frequency EM heating may give an indication of rate of BF in underlying tissue. This novel method, which we have termed REFLO (Rapid Electromagnetic Flow) has potential for applications such as detection of PAD. The method utilizes the relationship between blood flow rate and tissue temperature increase during exposure to radio frequency (RF) energy. We are developing an REFLO device to screen for peripheral artery disease (PAD). PAD is characterized by impaired blood flow to the legs, as reflected in the skin microcirculation. The REFLO system incorporates a radio frequency transmitter and a compact transducer housing a micropatch antenna and an infrared (IR) temperature sensor. At high RF frequencies (> 6 GHz) tissue heating is confined to the skin, such that an indication of blood flow may be inferred from the temperature response to controlled heating. The objective of this study is to determine the extent to which the magnitude and depth of heating as well as device sensitivity are functions of (i) RF frequency and (ii) thickness of the dermal tissue layer.</p><p><strong>Results: </strong>Results show that it is feasible to measure blood flow rate with REFLO technology. Surface temperature increases were found to be more dependent upon the magnitude of power absorption than location of absorption within the skin. While surface temperature response does depend upon radio wave frequency and thickness of the dermis layer, such dependencies are mild. Sensitivity to blood flow rate was found to be proportional to the magnitude of absorbed power.</p><p><strong>Conclusion: </strong>Results show that it is feasible to discriminate between blood flow rates using REFLO technology at frequencies within the 10-94 GHz range. All frequencies analyzed produced similar levels of sensitivity to blood flow rate despite significant differences in penetration depth. These results are being used in the development of a preclinical prototype for quick and easy detection of asymptomatic PAD in humans.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"7 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11697893/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142924208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-02DOI: 10.1186/s42490-024-00086-w
Joshua R Siegel, Jedidiah K Harwood, Annette C Lau, Dylan J A Brenneis, Michael R Dawson, Patrick M Pilarski, Jonathon S Schofield
Despite significant technological progress in prosthetic hands, a device with functionality akin to a biological extremity is far from realization. To better support the development of next-generation technologies, we investigated the grasping capabilities of clinically prescribable and commercially available (CPCA) prosthetic hands against those that are 3D-printed, which offer cost-effective and customizable solutions. Our investigation utilized the Anthropomorphic Hand Assessment Protocol (AHAP) as a benchtop evaluation of the multi-grasp performance of 3D-printed devices against CPCA prosthetic hands. Our comparison sample included three open-source 3D-printed prosthetic hands (HACKberry Hand, HANDi Hand, and BEAR PAW) and three CPCA prosthetic hands (Össur i-Limb Quantum, RSL Steeper BeBionic Hand V3, and Psyonic Ability Hand), along with including previously published AHAP data for four additional 3D-printed hands (Dextrus v2.0, IMMA, InMoov, and Limbitless). Our findings revealed a notable grasping performance disparity, with 3D-printed prostheses generally underperforming compared to their CPCA counterparts, specifically in cylindrical, diagonal volar, extension, and spherical grips. We propose that the observed performance shortfalls are likely attributed to the design or build quality of the 3D-printed prostheses, owing to the fact that 3D-printed hands often have a lower technology readiness level for widespread use. Addressing the limitations highlighted in this work and subsequent research will play a crucial role in refining the design and functionality of both 3D-printed and CPCA prosthetic devices.
尽管假手技术取得了重大进展,但与生物四肢功能类似的设备还远未实现。为了更好地支持下一代技术的发展,我们研究了临床处方和市售(CPCA)假手与3d打印假手的抓取能力,后者提供了成本效益和可定制的解决方案。我们的研究利用拟人化手评估协议(AHAP)作为对3d打印设备与CPCA假手的多抓握性能的台式评估。我们的比较样本包括三个开源3d打印假肢手(HACKberry Hand, HANDi Hand和BEAR PAW)和三个CPCA假肢手(Össur i-Limb Quantum, RSL更大的BeBionic Hand V3和Psyonic Ability Hand),以及先前发布的另外四个3d打印手(Dextrus v2.0, IMMA, InMoov和Limbitless)的AHAP数据。我们的研究结果显示了明显的抓取性能差异,与CPCA相比,3d打印假体通常表现不佳,特别是在圆柱形,对角线掌面,延伸和球形抓地力方面。我们认为,观察到的性能不足可能归因于3d打印假肢的设计或制造质量,因为3d打印的手通常具有较低的技术准备水平,无法广泛使用。解决本工作和后续研究中突出的局限性将在改进3d打印和CPCA假体装置的设计和功能方面发挥关键作用。
{"title":"A performance evaluation of commercially available and 3D-printable prosthetic hands: a comparison using the anthropomorphic hand assessment protocol.","authors":"Joshua R Siegel, Jedidiah K Harwood, Annette C Lau, Dylan J A Brenneis, Michael R Dawson, Patrick M Pilarski, Jonathon S Schofield","doi":"10.1186/s42490-024-00086-w","DOIUrl":"https://doi.org/10.1186/s42490-024-00086-w","url":null,"abstract":"<p><p>Despite significant technological progress in prosthetic hands, a device with functionality akin to a biological extremity is far from realization. To better support the development of next-generation technologies, we investigated the grasping capabilities of clinically prescribable and commercially available (CPCA) prosthetic hands against those that are 3D-printed, which offer cost-effective and customizable solutions. Our investigation utilized the Anthropomorphic Hand Assessment Protocol (AHAP) as a benchtop evaluation of the multi-grasp performance of 3D-printed devices against CPCA prosthetic hands. Our comparison sample included three open-source 3D-printed prosthetic hands (HACKberry Hand, HANDi Hand, and BEAR PAW) and three CPCA prosthetic hands (Össur i-Limb Quantum, RSL Steeper BeBionic Hand V3, and Psyonic Ability Hand), along with including previously published AHAP data for four additional 3D-printed hands (Dextrus v2.0, IMMA, InMoov, and Limbitless). Our findings revealed a notable grasping performance disparity, with 3D-printed prostheses generally underperforming compared to their CPCA counterparts, specifically in cylindrical, diagonal volar, extension, and spherical grips. We propose that the observed performance shortfalls are likely attributed to the design or build quality of the 3D-printed prostheses, owing to the fact that 3D-printed hands often have a lower technology readiness level for widespread use. Addressing the limitations highlighted in this work and subsequent research will play a crucial role in refining the design and functionality of both 3D-printed and CPCA prosthetic devices.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"6 1","pages":"11"},"PeriodicalIF":0.0,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11610161/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142775176","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}