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Scanning Optical Spectroelectrochemistry: Applications in Protein Redox Potential Measurements 扫描光谱电化学:在蛋白质氧化还原电位测量中的应用
Pub Date : 2022-09-27 DOI: 10.1002/cmtd.202200047
Prof. Paul V. Bernhardt

The accurate measurement of redox potentials of small molecules is a relatively straightforward task using electrochemical methods such as cyclic voltammetry. However, proteins, in most cases, are not amenable to the same approach due to slow heterogeneous electron transfer and the possibility of denaturing at the electrode surface. This necessitates the use of small molecular weight redox mediators to facilitate electron transfer. This leads to spectroelectrochemical techniques where the applied electrochemical potential is coupled to a spectroscopic signal of the protein. Traditionally this is done at different applied (fixed) potentials akin to an electrochemical titration, but the time required for electrochemical equilibrium to be established, and its consistent application, are major sources of experimental error. Here we have utilised a continuously scanning potential synchronised with time-resolved UV-vis spectroscopy to provide an automated approach that can be used to measure protein redox potentials accurately in an expedient manner. The test cases are the heme proteins cytochrome c and myoglobin. The scope and limitations of the method are discussed.

使用循环伏安法等电化学方法精确测量小分子的氧化还原电位是一项相对简单的任务。然而,在大多数情况下,由于缓慢的非均相电子转移和电极表面变性的可能性,蛋白质不适合采用相同的方法。这就需要使用小分子量的氧化还原介质来促进电子转移。这导致了光谱电化学技术,其中应用的电化学电位与蛋白质的光谱信号耦合。传统上,这是在不同的应用(固定)电位下完成的,类似于电化学滴定,但建立电化学平衡所需的时间,以及它的一致性应用,是实验误差的主要来源。在这里,我们利用与时间分辨紫外可见光谱同步的连续扫描电位来提供一种自动化的方法,可以用一种方便的方式准确地测量蛋白质氧化还原电位。测试用例是血红蛋白、细胞色素c和肌红蛋白。讨论了该方法的适用范围和局限性。
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引用次数: 1
An Easy-to-Use Custom-Built Cell for Neutron Powder Diffraction Studies of Rechargeable Batteries 用于可充电电池中子粉末衍射研究的易于使用的定制电池
Pub Date : 2022-09-15 DOI: 10.1002/cmtd.202200046
Daniel Risskov Sørensen, Andreas Østergaard Drejer, Michael Heere, Anatoliy Senyshyn, Matthias Frontzek, Thomas Hansen, Christophe Didier, Vanessa K. Peterson, Dorthe Bomholdt Ravnsbæk, Mads Ry Vogel Jørgensen

In operando powder diffraction remains one of the most powerful tools for non-destructive investigation of battery electrode materials. While in operando X-ray, especially synchrotron radiation, powder diffraction is by now a routine experimental technique, in operando neutron powder diffraction is still less established. We present a new electrochemical cell for in operando neutron powder diffraction, which is, first and foremost, easy to use, but can also cycle electrode materials under electrochemical conditions close to those achieved using standard laboratory cells. The cell has been designed in multiple sizes, and high-quality electrochemical and neutron powder diffraction data is presented for sample sizes as low as 48 mg total active material. The cell handles lithium-ion and sodium-ion materials equally well, with no difference in how the cell is prepared and assembled. The cell is intended to be used as sample environment at powder diffractometers at the neutron facilities MLZ, ORNL and ACNS.

在操作中,粉末衍射仍然是电池电极材料无损检测的最有力工具之一。虽然在操作X射线,特别是同步辐射中,粉末衍射现在是一种常规的实验技术,但在操作中子中,粉末衍射线还不太成熟。我们提出了一种用于操作中子粉末衍射的新型电化学电池,它首先易于使用,但也可以在接近使用标准实验室电池的电化学条件下循环电极材料。该电池被设计成多种尺寸,并且对于总活性材料低至48 mg的样品尺寸,提供了高质量的电化学和中子粉末衍射数据。该电池能很好地处理锂离子和钠离子材料,在电池的制备和组装方式上没有差异。该池拟用作中子设施MLZ、ORNL和ACNS的粉末衍射仪的样品环境。
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引用次数: 0
Cover Picture: In Situ Studies of the Formation of Tungsten and Niobium Oxide Nanoparticles: Towards Automated Analysis of Reaction Pathways from PDF Analysis using the Pearson Correlation Coefficient (Chem. Methods 9/2022) 封面图片:钨和氧化铌纳米颗粒形成的原位研究:使用Pearson相关系数对PDF分析的反应途径进行自动分析。方法9/2022)
Pub Date : 2022-09-05 DOI: 10.1002/cmtd.202200053
Emil T. S. Kjær, Olivia Aalling-Frederiksen, Dr. Long Yang, Nancy K. Thomas, Dr. Mikkel Juelsholt, Prof. Simon J. L. Billinge, Dr. Kirsten M. Ø. Jensen

The Front Cover shows a sketch of the formation process of metal oxide nanoparticles, where nanocrystalline oxides form from fragments of polyoxometalates. In situ X-ray total scattering studies with Pair Distribution Function analysis can give new insights into the formation process, as it provides structural information on all stages of the reaction – from precursor ions in solution, over amorphous or nanostructured intermediates to the final crystalline material. Here, we show how the analysis of such data can be automated using structure mining and simple computational tools. More information can be found in the Research Article by EmilT. S. Kjær0000et al..

封面展示了金属氧化物纳米颗粒形成过程的草图,其中纳米晶体氧化物由多金属氧酸盐碎片形成。使用对分布函数分析的原位x射线全散射研究可以为形成过程提供新的见解,因为它提供了反应所有阶段的结构信息-从溶液中的前体离子,非晶或纳米结构的中间体到最终的晶体材料。在这里,我们展示了如何使用结构挖掘和简单的计算工具自动分析这些数据。更多信息可以在EmilT的研究文章中找到。j . j . ær0000等。
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引用次数: 1
In Situ Studies of the Formation of Tungsten and Niobium Oxide Nanoparticles: Towards Automated Analysis of Reaction Pathways from PDF Analysis using the Pearson Correlation Coefficient 钨和氧化铌纳米颗粒形成的原位研究:利用Pearson相关系数对PDF分析的反应途径进行自动化分析
Pub Date : 2022-09-05 DOI: 10.1002/cmtd.202200052
Emil T. S. Kjær, Olivia Aalling-Frederiksen, Dr. Long Yang, Nancy K. Thomas, Dr. Mikkel Juelsholt, Prof. Simon J. L. Billinge, Dr. Kirsten M. Ø. Jensen

Invited for this month's cover are the groups of Kirsten M. Ø. Jensen at the University of Copenhagen (Denmark) and Simon J. L. Billinge at Columbia University (US). The cover picture shows a sketch of the formation process of metal oxide nanoparticles, where nanocrystalline oxides form from fragments of e.g., polyoxometalates. In situ X-ray total scattering studies with Pair Distribution Function analysis can give new insights into the formation process, as it provides structural information on all stages of the reaction – from precursor ions in solution, over amorphous or nanostructured intermediates to the final crystalline material. Here, it is show how the analysis of such data can be automated using structure mining and simple computational tools. Read the full text of their Research Article at 10.1002/cmtd.202200034.

本月的封面邀请是Kirsten M. Ø的团体。丹麦哥本哈根大学的Jensen和美国哥伦比亚大学的Simon J. L. Billinge。封面图片显示了金属氧化物纳米颗粒形成过程的草图,其中纳米晶氧化物由例如多金属氧酸盐的碎片形成。使用对分布函数分析的原位x射线全散射研究可以为形成过程提供新的见解,因为它提供了反应所有阶段的结构信息-从溶液中的前体离子,非晶或纳米结构的中间体到最终的晶体材料。在这里,它展示了如何使用结构挖掘和简单的计算工具自动分析这些数据。阅读他们的研究论文全文:10.1002/cmtd.202200034。
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引用次数: 0
A Web Tool for Calculating Substituent Descriptors Compatible with Hammett Sigma Constants** 一个计算取代基描述符与哈米特σ常数兼容的网络工具**
Pub Date : 2022-08-30 DOI: 10.1002/cmtd.202200041
Dr. Peter Ertl

The electron-donating and -accepting power of organic substituents is an important parameter affecting many properties of parent molecules, most notably their reactivity and pKa of ionisable groups. These substituent properties are described by Hammett σ constants obtained by measuring ionization constants of substituted benzoic acids. Although values of the Hammett σ constants have been measured for the most common functional groups, data for many important substituents are not available. In the present study, a method to calculate substituent descriptors compatible with the Hammett σ constants using quantum-chemically derived parameters is described. On this basis, a free web tool allowing to calculate electronic and hydrophobic substituent descriptors is made available at https://bitly.com/getsigmas.

有机取代基的供电子和接受电子能力是影响母体分子许多性质的重要参数,其中最显著的是它们的反应活性和可电离基团的pKa。这些取代基的性质用测量取代苯甲酸的电离常数得到的哈米特σ常数来描述。虽然哈米特σ常数的值已经测量了最常见的官能团,许多重要的取代基的数据是不可用的。本文描述了一种利用量子化学导出的参数计算与哈米特σ常数相容的取代基描述子的方法。在此基础上,一个免费的网络工具允许计算电子和疏水取代基描述符在https://bitly.com/getsigmas上可用。
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引用次数: 0
Quantification of the Strength of π-Noncovalent Interactions in Molecular Balances using Density Functional Methods 使用密度泛函方法量化分子平衡中π-非共价相互作用的强度
Pub Date : 2022-08-12 DOI: 10.1002/cmtd.202200044
Luka Nunar, Dr. Abil E. Aliev

Different molecular balances were designed previously to compare noncovalent interactions. However, some balances are difficult to synthesise and there is a need for developing a computational approach. In this work, we probe noncovalent interactions of π systems using DFT methods to assess their reliability in reproducing experimentally measured conformer populations. Based on our results, the PW6B95D3 functional performed best, followed by M11L and ωB97XD. Additionally, the simulation of the rotation of the hydroxyl group revealed stabilising OH⋯Alkyne and OH⋯Nitrile interactions that are difficult to identify experimentally. These methods were then applied to compare the strengths of sulfur⋯π interactions in molecules which have not been explored experimentally. Compared to the hydroxyl counterpart, the simulation of the thiol group rotation showed that the geometry of the conformer with the two sulfur lone pairs oriented towards the aromatic ring or the double bond is stabilised, suggesting that S(LP)⋯π interactions can be attractive in nature. The ability of sulfur to rearrange its electronic surrounding to form an attractive interaction with π systems, including those with either electron-donating or withdrawing groups, was also confirmed. Overall, the results show a promising future for both qualitative and quantitative assessments of the strengths of noncovalent interactions using selected DFT techniques.

以前设计了不同的分子平衡来比较非共价相互作用。然而,有些平衡很难合成,需要开发一种计算方法。在这项工作中,我们使用DFT方法探测π系统的非共价相互作用,以评估它们在再现实验测量的构象种群方面的可靠性。根据我们的结果,PW6B95D3功能表现最好,其次是M11L和ωB97XD。此外,羟基旋转的模拟揭示了难以通过实验识别的稳定OH⋯炔和OH⋯腈相互作用。然后应用这些方法来比较尚未在实验中探索的分子中硫π相互作用的强度。与羟基对应物相比,巯基旋转的模拟表明,具有两个硫孤对的构象的几何形状朝向芳香环或双键是稳定的,这表明S(LP)⋯π相互作用在本质上是有吸引力的。硫能够重新排列其电子周围,从而与π系统形成吸引的相互作用,包括那些有电子提供或撤回基团的π系统,也得到了证实。总的来说,研究结果表明,使用选定的DFT技术对非共价相互作用的强度进行定性和定量评估是有希望的。
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引用次数: 0
In situ X-ray Scattering of the Crystallisation of Basic Magnesium Chlorides using a Laboratory Instrument 使用实验室仪器对碱性氯化镁结晶的原位X射线散射
Pub Date : 2022-08-09 DOI: 10.1002/cmtd.202200033
Katie S. Pickering, Dr. Steven Huband, Dr. Kirill L. Shafran, Prof. Richard I. Walton

We demonstrate a method for in situ monitoring of the crystallisation of basic magnesium chlorides using a laboratory-based SAXS (small angle X-ray scattering)/ WAXS (wide angle X-ray scattering) instrument. By simultaneous acquisition of SAXS/WAXS, time-resolved particle size and phase evolution information was obtained from room temperature to 120 °C. The WAXS data were analysed using two-phase Rietveld refinements, to produce crystallisation curves. From Avrami-type kinetic analysis two competing mechanistic processes were proposed for the formation of Mg3Cl(OH)5 ⋅ 4 H2O with a nucleation-type mechanism extending further into the reaction with increased temperature. When comparing SAXS and WAXS, an offset between the consumption of MgO and the reduction of the sphere contribution to the SAXS scattering is observed. This is rationalised by the formation of an amorphous Mg(OH)2 layer on the MgO particle surface. Although laboratory-based SAXS/WAXS instruments have limitations compared to synchrotron-based sources, we have demonstrated how they can provide new insights into the formation of materials.

我们展示了一种使用基于实验室的SAXS(小角x射线散射)/ WAXS(广角x射线散射)仪器原位监测碱性氯化镁结晶的方法。通过同时采集SAXS/ WAXS,在室温至120℃范围内获得了时间分辨粒度和相演化信息。WAXS数据采用两相Rietveld细化法进行分析,得到结晶曲线。通过avrami型动力学分析,提出了两种相互竞争的mg3cl (OH) 5·4h2o生成机理,随着反应温度的升高,形成核型机理进一步延伸。当比较SAXS和WAXS时,观察到MgO的消耗和球对SAXS散射贡献的减少之间的抵消。在MgO颗粒表面形成无定形的Mg(OH) 2层是合理的。尽管基于实验室的SAXS/ WAXS仪器与基于同步加速器的源相比有局限性,但我们已经展示了它们如何为材料的形成提供新的见解。
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引用次数: 0
Following Cu Microstructure Evolution in CuZnO/Al2O3(−Cs) Catalysts During Activation in H2 using in situ XRD and XRD-CT 用原位XRD和XRD‐CT研究CuZnO/ al2o3(−Cs)催化剂在h2活化过程中Cu的微观结构演变
Pub Date : 2022-08-03 DOI: 10.1002/cmtd.202200015
Dr. Daniela M. Farmer, Dr. Simon D. M. Jacques, Dr. David Waller, Dr. Sara Boullosa Eiras, Dr. Kanak Roy, Dr. Georg Held, Prof. Gopinathan Sankar, Prof. Andrew M. Beale

Understanding how the microstructure of the active Cu0 component in the commercially applicable Cu/ZnO/Al2O3(−Cs2O) low-temperature water-gas shift catalyst evolves under various H2 partial pressures in the presence/absence of a Cs promoter during thermal activation has been investigated. Time-resolved XRD and spatially-resolved XRD-CT data were measured as a function of H2 concentration along a packed bed reactor to elucidate the importance of the zincite support and the effect of the promoter on Cu sintering mechanisms, dislocation character and stacking fault probability. The rate of Cu reduction showed a dependency on [Cs], [H2] and bed height; lower [Cs] and higher [H2] led to a greater rate of metallic copper nanoparticle formation. A deeper analysis of the XRD line profiles allowed for determining a greater edge character to the dislocations and subsequent stacking fault probability was also observed to depend on higher [H2], smaller Cu0 (and ZnO) crystallite sizes, increased [ZnO] (30 wt.%, sCZA) and lower temperature. The intrinsic activity of Cu/ZnO/Al2O3 methanol synthesis catalysts has been intimately linked to the anisotropic behaviour of copper, and thus the presence of lattice defects; to the best knowledge of the authors, this study is the first instance in which this type of analysis has been applied to LT-WGS catalysts.

研究了商用Cu/ZnO/ Al2O3(Cs2O)低温水煤气转换催化剂在不同H2分压下,在有无Cs促进剂的情况下,其活性Cu组分在热活化过程中的微观结构。利用时间分辨XRD和空间分辨XRD- ct数据作为H2浓度的函数在填充床上进行了测量,以阐明锌矿载体的重要性以及促进剂对Cu烧结机制、位错特征和层错概率的影响。Cu的还原速率与[Cs]、[H2]和床层高度有关;较低的[Cs]和较高的[H2]导致金属铜纳米颗粒的形成率较高。对XRD谱线进行更深入的分析,可以确定位错的更大边缘特征,并观察到随后的层错概率取决于较高的[H2],较小的Cu(和ZnO)晶粒尺寸,增加的[ZnO] (30 wt.%, sCZA)和较低的温度。Cu/ZnO/Al2O3甲醇合成催化剂的本征活性与铜的各向异性行为密切相关,因此存在晶格缺陷;据作者所知,这项研究是第一次将这种类型的分析应用于LT-WGS催化剂。
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引用次数: 1
In Situ Studies of the Formation of Tungsten and Niobium Oxide Nanoparticles: Towards Automated Analysis of Reaction Pathways from PDF Analysis using the Pearson Correlation Coefficient 在里面 钨和氧化铌纳米颗粒形成的原位研究:利用Pearson相关系数从PDF分析中自动分析反应途径
Pub Date : 2022-08-03 DOI: 10.1002/cmtd.202200034
Emil T. S. Kjær, Olivia Aalling-Frederiksen, Dr. Long Yang, Nancy K. Thomas, Dr. Mikkel Juelsholt, Prof. Simon J. L. Billinge, Dr. Kirsten M. Ø. Jensen

Using Pair Distribution Function (PDF) analysis of in situ total scattering data, we investigate the formation of tungsten and niobium oxides in a simple solvothermal synthesis. We use Pearson Correlation Coefficient (PCC) analysis of the time resolved PDFs to both map the structural changes taking place throughout the synthesis and identify structural models for precursor and product through PCC-based structure mining. Our analysis first shows that ultra-small tungsten and niobium oxide nanoparticles form instantaneously upon heating, with sizes between 1.5 and 2 nm. We show that the main structural motifs in the nanoparticles can be described with structures containing pentagonal columns, which is characteristic for many bulk tungsten and niobium oxides. We furthermore elucidate the structure of the precursor complex as clusters of octahedra with O- and Cl-ligands. The PCC based methodology automates the structure characterization and proves useful for analysis of large datasets of for example, time resolved X-ray scattering studies. The PCC is implemented in ‘PDF in the cloud’, a web platform for PDF analysis.

利用对原位总散射数据的对分布函数(PDF)分析,研究了简单溶剂热合成中钨和铌氧化物的形成。我们使用时间分辨pdf的Pearson相关系数(PCC)分析来绘制整个合成过程中发生的结构变化,并通过基于PCC的结构挖掘来识别前体和产品的结构模型。我们的分析首先表明,超小的氧化钨和氧化铌纳米粒子在加热时瞬间形成,尺寸在1.5到2纳米之间。我们发现纳米颗粒中的主要结构基序可以用含有五边形柱的结构来描述,这是许多大块钨和铌氧化物的特征。我们进一步阐明了前体配合物的结构为带有O-和cl -配体的八面体簇。基于PCC的方法自动化了结构表征,并证明了对大型数据集的分析有用,例如,时间分辨x射线散射研究。PCC在“PDF in The cloud”中实现,这是一个PDF分析的网络平台。
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引用次数: 2
Cover Picture: Flow Synthesis of Single and Mixed Metal Oxides (Chem. Methods 8/2022) 封面图片:单一和混合金属氧化物的流动合成(化学)。方法8/2022)
Pub Date : 2022-07-25 DOI: 10.1002/cmtd.202200048
Dr. Zachary S. Campbell, Steven Baro, Dr. Yunfei Gao, Prof. Fanxing Li, Prof. Milad Abolhasani

The Front Cover shows a versatile flow synthesis strategy for continuous manufacturing of single- and mixed-metal oxide particles with a high degree of size monodispersity. The flow-focusing microreactor equipped with an online photo-crosslinking module enables facile production of a broad range of monodispersed metal oxide particles (ZnO, SnO2, CeO2, LaPrO3) using metal organic precursors beyond metal alkoxides. More information can be found in the Research Article by Zachary S. Campbell et al..

前盖显示了一个通用的流动合成策略,用于连续制造具有高度尺寸单分散性的单一和混合金属氧化物颗粒。该流动聚焦微反应器配备了在线光交联模块,可以使用金属有机前体,而不是金属醇氧化物,轻松生产各种单分散金属氧化物颗粒(ZnO, SnO2, CeO2, LaPrO3)。更多信息可以在Zachary S.的研究文章中找到。坎贝尔等人……
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引用次数: 0
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Chemistry methods : new approaches to solving problems in chemistry
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