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rTMS-enhanced gamma oscillation through strengthened network connection. rtms通过加强网络连接增强伽马振荡。
M. Dou, X. Tian
Gamma oscillations emerge generally in working memory to aspect of higher cognitive functions, and typically with the interaction of brain network. How is gamma oscillatory activity influenced by the functional connection in the brain'a network? How can gamma oscillations be increased by neural modulation to result in potential benefits for working memory? The present study aims to investigate the intensity of gamma oscillations modulated by low frequency repetitive transcranial magnetic stimulation (rTMS), and the possible brain network mechanism of increased gamma oscillations during working memory task in rats. Adult SD rats were divided into two groups: rTMS group receiving low frequency (1Hz) rTMS for 14 consecutive days and control group.16-channel local field potentials (LFPs) were recorded from rat prefrontal cortex while the rats performed a working memory task on Y-maze. Feature frequency oscillations in LFPs were measured by coherence analysis. Furthermore, the values of Directed transfer function (DTF) among LFPs were calculated to describe the function connection quantitatively in LFP network. The results show that the gamma (30-60Hz) synchronization preceded rat's correct choice in working memory task for the two groups. Coherence peaked before the behavior reference point for the two groups. Meanwhile, DTF value peaked before the behavior reference point for control and rTMS groups respectively. The rTMS modulation resulted in a coordinated increase in both gamma oscillation and strength of connection in the gamma band, which showed a significant difference (P<0.01). These findings suggest that gamma oscillations occur (both energy density and coherence in gamma-band) during working memory, which might be led by functional connection in gamma-band LFP network. Furthermore, gamma oscillation can be stimulated by rTMS, and strength gamma oscillation might be caused by the rTMS-mediated enhanced connection in the network.
伽马振荡通常出现在工作记忆和高级认知功能方面,通常与大脑网络的相互作用有关。脑网络的功能连接如何影响伽马振荡活动?如何通过神经调节增加伽马振荡从而对工作记忆产生潜在的好处?本研究旨在探讨低频重复经颅磁刺激(rTMS)对大鼠工作记忆任务中伽马振荡强度的调节,以及伽马振荡增加的可能脑网络机制。将成年SD大鼠分为两组:接受低频(1Hz) rTMS连续14 d的rTMS组和对照组。在y型迷宫中进行工作记忆任务时,记录大鼠前额皮质16通道局部场电位(LFPs)。通过相干分析测量了lfp的特征频率振荡。此外,计算了LFP之间的有向传递函数(DTF)值,定量描述了LFP网络中的功能连接。结果表明,两组大鼠在工作记忆任务中,γ (30-60Hz)同步先于正确选择。两组的一致性在行为参照点之前达到峰值。同时,对照组和rTMS组DTF值分别在行为参考点前达到峰值。rTMS调制导致γ振荡和γ波段连接强度的协调增加,两者呈显著性差异(P<0.01)。这些结果表明,在工作记忆过程中会出现伽马振荡(包括伽马波段的能量密度和相干性),这可能是由伽马波段LFP网络的功能连接所导致的。此外,rTMS可以刺激伽马振荡,强度伽马振荡可能是由rTMS介导的网络连接增强引起的。
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引用次数: 0
Ultrafast oscillatory-flow PCR for amplication of urine short tandem repeats. 超快速振荡流PCR扩增尿短串联重复序列。
Haoyu Tang, Tao Dong
The short tandem repeats (STRs) in human urine which is the most sensitive body fluid can be serviced as biomarkers for the individual identification. PCR microchips are automated, sensitive and rapid. In this report, COMSOL with Finite Element Analysis (FEA) is employed to study the temperature distribution of the base layer to optimize the structure of the microfluidic chip. Meanwhile, the oscillatory PCR microdevice is preliminary tested by DNA samples extracted from urine with the FTA papers and CSF1PO, TPOX, TH01 Multiplex kits. The results show that this method can finish the DNA amplification within 17 minutes for 27 thermal cycling and the annealing as well as denaturing temperature were respectively 60°C and 93 °C.
尿中的短串联重复序列(STRs)是最敏感的体液,可作为个体鉴定的生物标志物。PCR微芯片自动化、灵敏、快速。本报告采用COMSOL结合有限元分析(Finite Element Analysis, FEA)对基底层温度分布进行研究,优化微流控芯片的结构。同时,用FTA纸和CSF1PO、TPOX、TH01 Multiplex试剂盒对从尿液中提取的DNA样本进行振荡PCR微装置的初步检测。结果表明,该方法经过27次热循环,在17分钟内完成DNA扩增,退火温度为60℃,变性温度为93℃。
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引用次数: 0
Prediction method for Intronic alternative polyadenylation sites. 内含子选择性聚腺苷化位点的预测方法。
Shanxin Zhang
Alternative Polyadenylation (APA) of mRNAs has been proven as a considerable mechanism for post-transcriptional gene regulation. The interplay between Intronic APA and splicing may affect the isoforms of mRNAs. In this paper, we have found four prevalent motifs, i.e. AATAAA, TTTTTTTT, CCAGSCTGG and RGYRYRGTGG surrounding the polyadenylation sites; then we proposed a new computational method to identify the Intronic APA sites in the human genome, which is based on a Support Vector Machine (SVM) with weighted degree string kernel. Compared with other APA events, Intronic APA sites are likely to be with TTTTTTTT pattern. The proposed algorithm can correctly classify 89% of Intronic APA sites from the constitutive polyadenylation sites. In addition, the prediction accuracy of separating the Intronic APA from other types of APA could be up to 88.3%. The prediction results indicate that our computational method is promising for the identification of Intronic APA sites.
mrna的选择性聚腺苷化(APA)已被证明是转录后基因调控的重要机制。内含子APA和剪接之间的相互作用可能影响mrna的同工型。在本文中,我们发现了四个普遍的基序,即AATAAA, TTTTTTTT, CCAGSCTGG和RGYRYRGTGG围绕聚腺苷化位点;在此基础上,提出了一种基于加权度字符串核的支持向量机(SVM)的人类基因组内含子APA位点识别方法。与其他APA事件相比,内含子APA位点可能为TTTTTTTT模式。所提出的算法可以正确地将89%的内含子APA位点从组成型聚腺苷化位点中分类出来。此外,内含子型APA与其他类型APA的预测准确率可达88.3%。预测结果表明,我们的计算方法在内含子APA位点的识别上是有希望的。
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引用次数: 0
Emotion state identification based on heart rate variability and genetic algorithm. 基于心率变异性和遗传算法的情绪状态识别。
Sung-Nien Yu, Shu-Feng Chen
The objective of this study is to develop an effective emotion recognition system based on ECG. The proposed emotion recognition system is capable of differentiating four kinds of emotions, namely neutral, happiness, stress, and sadness, based on the heart rate variability (HRV). Ten male subjects were involved in the study. Both visual and auditory stimuli were used to stimulate the emotions. Four categories of HRV features, namely time-domain, frequency-domain, Poincare plot, and differential features, were exploited to characterize the physiological changes during the affective stimuli. The support vector machine (SVM) was employed as the classifier. The genetic algorithm (GA) was exploited as feature selector. Without feature selector, only 52.2% recognition rate was achieved. However, with the GA feature selector, an optimal recognition rate of 90% was achieved. Compared with other user-independent systems published in the literature, the proposed method achieves an accuracy of 90% which is demonstrated to be the most effective for discriminating four kinds of emotions with user-independent design policy.
本研究的目的是开发一种有效的基于心电的情绪识别系统。提出的情绪识别系统能够根据心率变异性(HRV)区分四种情绪,即中性、快乐、压力和悲伤。10名男性受试者参与了这项研究。视觉和听觉刺激都被用来刺激情绪。利用四类HRV特征,即时域、频域、庞加莱图和差分特征来表征情感刺激时的生理变化。采用支持向量机(SVM)作为分类器。利用遗传算法(GA)作为特征选择器。在没有特征选择器的情况下,识别率仅为52.2%。然而,使用GA特征选择器,最优识别率达到90%。与文献中已发表的其他独立于用户的系统相比,该方法的准确率达到90%,并被证明是使用独立于用户的设计策略来区分四种情绪的最有效方法。
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引用次数: 33
Determining the variability in O(2) saturation measurements in devices of the "Dr. Guillermo Rawson" hospital. 确定“Dr. Guillermo Rawson”医院设备中O(2)饱和度测量的可变性。
F. J. Munoz Zapata, L. Pulenta, P. Bustamante, E. M. Avila Perona
Measurement of oxygen saturation is a noninvasive monitoring method that has had a major impact on patient care in both emergency and ambulatory situations. It is an important parameter in neonatology field, especially in newborn preterm births, and in anesthetic and surgical procedures.
血氧饱和度测量是一种无创监测方法,对急诊和门诊病人的护理都有重大影响。在新生儿领域,特别是在新生儿早产,以及在麻醉和外科手术中,它是一个重要的参数。
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引用次数: 0
Using sequential patterns as features for classification models to make accurate predictions on ICU events. 使用顺序模式作为分类模型的特征,对ICU事件进行准确预测。
Shameek Ghosh, Jinyan Li
Pattern mining algorithms have previously been utilized to extract informative rules in various clinical contexts. However, the number of generated patterns are numerous. In most cases, the extracted rules are directly investigated by clinicians for understanding disease diagnoses. The elicitation of important patterns for clinical investigation places a significant demand for precision and interpretability. Hence, it is essential to obtain a set of informative interpretable patterns for building advanced learning models about a patient's physiological condition, specially in critical care units. In this study, a two stage sequential contrast patterns based classification framework is presented, which is used to detect critical patient events like hypotension. In the first stage, we obtain a set of sequential patterns by using a contrast mining algorithm. These sequential patterns undergo post-processing, for conversion to binary valued and frequency based features for developing a classification model, in the second stage. Our results on eight critical care datasets demonstrate better predictive capabilities, when sequential patterns are used as features.
模式挖掘算法以前被用于在各种临床环境中提取信息规则。然而,生成的模式的数量是很多的。在大多数情况下,临床医生直接调查提取的规则,以了解疾病诊断。对临床研究的重要模式的启发对准确性和可解释性提出了重要的要求。因此,有必要获得一组信息丰富的可解释模式,以建立关于患者生理状况的高级学习模型,特别是在重症监护病房。在这项研究中,提出了一个基于两阶段顺序对比模式的分类框架,用于检测低血压等关键患者事件。在第一阶段,我们使用对比挖掘算法获得一组序列模式。这些顺序模式经过后处理,在第二阶段转换为二进制值和基于频率的特征,以开发分类模型。我们对8个重症监护数据集的研究结果表明,当使用顺序模式作为特征时,预测能力更好。
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引用次数: 0
Structure of the set of feasible neural commands for complex motor tasks. 复杂运动任务的可行神经指令集结构。
F. Valero-Cuevas, B. Cohn, M. Szedlák, K. Fukuda, B. Gartner
The brain must select its control strategies among an infinite set of possibilities; researchers believe that it must be solving an optimization problem. While this set of feasible solutions is infinite and lies in high dimensions, it is bounded by kinematic, neuromuscular, and anatomical constraints, within which the brain must select optimal solutions. That is, the set of feasible activations is well structured. However, to date there is no method to describe and quantify the structure of these high-dimensional solution spaces. Bounding boxes or dimensionality reduction algorithms do not capture their detailed structure. We present a novel approach based on the well-known Hit-and-Run algorithm in computational geometry to extract the structure of the feasible activations capable of producing 50% of maximal fingertip force in a specific direction. We use a realistic model of a human index finger with 7 muscles, and 4 DOFs. For a given static force vector at the endpoint, the feasible activation space is a 3D convex polytope, embedded in the 7D unit cube. It is known that explicitly computing the volume of this polytope can become too computationally complex in many instances. However, our algorithm was able to sample 1,000,000 uniform at random points from the feasible activation space. The computed distribution of activation across muscles sheds light onto the structure of these solution spaces-rather than simply exploring their maximal and minimal values. Although this paper presents a 7 dimensional case of the index finger, our methods extend to systems with at least 40 muscles. This will allow our motor control community to understand the distributions of feasible muscle activations, providing important contextual information into learning, optimization and adaptation of motor patterns in future research.
大脑必须在无限的可能性中选择控制策略;研究人员认为,这一定是在解决一个优化问题。虽然这组可行的解决方案是无限的,并且位于高维,但它受到运动学,神经肌肉和解剖学的限制,大脑必须在这些限制中选择最佳解决方案。也就是说,可行激活的集合结构良好。然而,到目前为止,还没有方法来描述和量化这些高维解空间的结构。边界框或降维算法不能捕获它们的详细结构。我们提出了一种基于计算几何中著名的Hit-and-Run算法的新方法,以提取能够在特定方向上产生最大指尖力50%的可行激活结构。我们使用一个真实的人类食指模型,有7块肌肉和4个自由度。对于端点处给定的静力矢量,可行激活空间是嵌入在7D单元立方体中的三维凸多面体。众所周知,在许多情况下,显式计算这种多面体的体积会变得过于复杂。然而,我们的算法能够从可行激活空间的随机点采样1,000,000个均匀。计算出的肌肉激活分布揭示了这些解空间的结构,而不是简单地探索它们的最大值和最小值。虽然本文提出了一个7维的情况下,食指,我们的方法扩展到系统至少有40块肌肉。这将使我们的运动控制社区了解可行肌肉激活的分布,为未来研究中运动模式的学习,优化和适应提供重要的上下文信息。
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引用次数: 4
A highly detailed FEM volume conductor model based on the ICBM152 average head template for EEG source imaging and TCS targeting. 基于ICBM152平均头模板的EEG源成像和TCS定位的精细有限元体导体模型。
S. Haufe, Yu Huang, L. Parra
In electroencephalographic (EEG) source imaging as well as in transcranial current stimulation (TCS), it is common to model the head using either three-shell boundary element (BEM) or more accurate finite element (FEM) volume conductor models. Since building FEMs is computationally demanding and labor intensive, they are often extensively reused as templates even for subjects with mismatching anatomies. BEMs can in principle be used to efficiently build individual volume conductor models; however, the limiting factor for such individualization are the high acquisition costs of structural magnetic resonance images. Here, we build a highly detailed (0.5mm(3) resolution, 6 tissue type segmentation, 231 electrodes) FEM based on the ICBM152 template, a nonlinear average of 152 adult human heads, which we call ICBM-NY. We show that, through more realistic electrical modeling, our model is similarly accurate as individual BEMs. Moreover, through using an unbiased population average, our model is also more accurate than FEMs built from mismatching individual anatomies. Our model is made available in Matlab format.
在脑电图(EEG)源成像以及经颅电流刺激(TCS)中,通常使用三壳边界元(BEM)或更精确的有限元(FEM)体积导体模型来模拟头部。由于构建fem需要大量的计算和劳动,因此它们经常被广泛地重用为模板,甚至对于解剖结构不匹配的受试者也是如此。BEMs原则上可用于有效地建立单个体积导体模型;然而,这种个性化的限制因素是结构磁共振图像的高采集成本。在这里,我们基于ICBM152模板构建了一个非常详细的(0.5mm(3)分辨率,6个组织类型分割,231个电极)FEM,这是152个成年人头部的非线性平均值,我们称之为ICBM-NY。我们表明,通过更现实的电建模,我们的模型与单个bem相似。此外,通过使用无偏总体平均值,我们的模型也比从不匹配的个体解剖结构中建立的fem更准确。我们的模型以Matlab格式提供。
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引用次数: 15
Calcium leak induced arrhythmias in mouse sino-atrial node and ventricle cells: A simulation study. 钙漏致小鼠心房结和心室细胞心律失常的模拟研究。
Qingjie Wang, S. Kharche, Gareth M. Jones, Cunjin Luo, Chengchun Tang, Henggui Zhang
Bradycardia is found to be a complication during catecholaminergic polymorphic ventricular tachycardia in which calcium leak plays a pivotal role. In this computational study, we determined the effects of sarcoplasmic reticulum calcium leak on the function of sino-atrial node and ventricular model cells.
心动过缓是儿茶酚胺能多形性室性心动过速的并发症,其中钙漏起关键作用。在本计算研究中,我们测定了肌浆网钙渗漏对窦房结和心室模型细胞功能的影响。
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引用次数: 0
Development of technique for laser welding of biological tissues using laser welding device and nanocomposite solder. 利用激光焊接装置和纳米复合焊料进行生物组织激光焊接技术的发展。
A. Gerasimenko, L. Ichcitidze, V. Podgaetsky, D. Ryabkin, E. Pyankov, M. Saveliev, S. Selishchev
The laser device for welding of biological tissues has been developed involving quality control and temperature stabilization of weld seam. Laser nanocomposite solder applied onto a wound to be weld has been used. Physicochemical properties of the nanocomposite solder have been elucidated. The nature of the tissue-organizing nanoscaffold has been analyzed at the site of biotissue welding.
研制了一种用于生物组织焊接的激光装置,涉及焊缝质量控制和温度稳定。将激光纳米复合焊料应用于待焊伤口。研究了纳米复合钎料的物理化学性质。在生物组织焊接现场分析了组织组织纳米支架的性质。
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引用次数: 1
期刊
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
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