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Distal radius bone mineral density estimation using the filling factor of trabecular bone in the x-ray image. 基于x线图像中骨小梁填充因子的桡骨远端骨密度估计。
Sooyeul Lee, Ji-Wook Jeong, Jeong Won Lee, Done-Sik Yoo, Seunghwan Kim

Osteoporosis is characterized by an abnormal loss of bone mineral content, which leads to a tendency to non-traumatic bone fractures or to structural deformations of bone. Thus, bone density measurement has been considered as a most reliable method to assess bone fracture risk due to osteoporosis. In past decades, X-ray images have been studied in connection with the bone mineral density estimation. However, the estimated bone mineral density from the X-ray image can undergo a relatively large accuracy or precision error. The most relevant origin of the accuracy or precision error may be unstable X-ray image acquisition condition. Thus, we focus our attentions on finding a bone mineral density estimation method that is relatively insensitive to the X-ray image acquisition condition. In this paper, we develop a simple technique for distal radius bone mineral density estimation using the trabecular bone filling factor in the X-ray image and apply the technique to the wrist X-ray images of 20 women. Estimated bone mineral density shows a high linear correlation with a dual-energy X-ray absorptiometry (r=0.87).

骨质疏松症的特点是骨矿物质含量的异常损失,导致非创伤性骨折或骨结构变形的倾向。因此,骨密度测量被认为是评估骨质疏松所致骨折风险最可靠的方法。在过去的几十年里,人们一直在研究x射线图像与骨矿物质密度的关系。然而,从x射线图像中估计的骨矿物质密度可能会经历相对较大的准确性或精度误差。精度或精度误差最相关的来源可能是不稳定的x射线图像采集条件。因此,我们的重点是寻找一种对x射线图像采集条件相对不敏感的骨矿物质密度估计方法。在本文中,我们开发了一种使用x线图像中的小梁骨填充因子来估计桡骨远端骨密度的简单技术,并将该技术应用于20名女性的手腕x线图像。估计骨密度与双能x线吸收仪显示高度线性相关(r=0.87)。
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引用次数: 6
Modelling and simulation of the TLR4 pathway with coloured petri nets. 用彩色petri网对TLR4通路进行建模和仿真。
C Täubner, B Mathiak, A Kupfer, N Fleischer, S Eckstein

This paper demonstrates the first steps of an automation process to develop models of signal transduction pathways using discrete modelling languages. The whole approach consists of modelling, validation, animation, linking databases to simulation tools and also the qualitative analysis of the data. In this paper, we detail the modelling and simulation of the TLR4 pathway with a coloured petri net simulation tool and the validation of this model against the semantic and mechanistic map from a biological database. These graphical maps contain all necessary reactions as a figure. We start with an UML class diagram to understand the static structure of molecules involved in the TLR4 pathway. Afterwards we model and simulate each "pathway step reaction" - one after another - to get the behaviour of the final system. The result is a model of the pathway which can be used in simulations, derived solely from basic chemical reactions in the database. Also, it is a lesson on critical points where human decision-making is needed, because not all the required information is stored directly in the database.

本文演示了使用离散建模语言开发信号转导途径模型的自动化过程的第一步。整个方法包括建模、验证、动画、将数据库与仿真工具连接以及数据的定性分析。在本文中,我们详细介绍了TLR4通路的建模和仿真与彩色petri网仿真工具,并验证了该模型对语义和机制图从生物数据库。这些图表以图形的形式包含了所有必要的反应。我们从UML类图开始,以了解TLR4途径中涉及的分子的静态结构。然后,我们一个接一个地对每个“路径阶跃反应”进行建模和模拟,以得到最终系统的行为。结果是一个可以用于模拟的途径模型,仅从数据库中的基本化学反应中导出。此外,这是一个关于需要人工决策的关键点的教训,因为并非所有所需的信息都直接存储在数据库中。
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引用次数: 30
Computation intelligent for eukaryotic cell-cycle gene network. 真核细胞周期基因网络的智能计算。
Shinq-Jen Wu, Cheng-Tao Wu, Tsu-Tian Lee

Computational intelligent approaches is adopted to construct the S-system of eukaryotic cell cycle for further analysis of genetic regulatory networks. A highly nonlinear power-law differential equation is constructed to describe the transcriptional regulation of gene network from the time-courses dataset. Global artificial algorithm, based on hybrid differential evolution, can achieve global optimization for the highly nonlinear differential gene network modeling. The constructed gene regulatory networks will be a reference for researchers to realize the inhibitory and activatory operator for genes synthesis and decomposition in Eukaryotic cell cycle.

采用计算智能方法构建真核细胞周期s系统,进一步分析遗传调控网络。利用时间序列数据构建了一个高度非线性的幂律微分方程来描述基因网络的转录调控。基于混合差分进化的全局人工算法可以对高度非线性的差分基因网络建模实现全局优化。构建的基因调控网络将为研究人员实现真核细胞周期中基因合成和分解的抑制和激活操作符提供参考。
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引用次数: 5
The maternal ECG suppression algorithm for efficient extraction of the fetal ECG from abdominal signal. 采用母体心电抑制算法从胎儿腹部信号中有效提取胎儿心电信号。
A Matonia, J Jezewski, K Horoba, A Gacek, P Labaj

At present, noninvasive recording of abdominal fetal electrocardiogram and analysis of the fetal heart rate variability seems to be the most promising method to detect the fetal hypoxia. The main problem is to obtain a good quality fetal ECG, which is strongly distorted by maternal component of dominating energy. The paper presents the new method of maternal electrocardiogram recognition and suppression relying on determination of template maternal PQRST complex and its subtraction during consecutive maternal cardiac cycles. The efficiency of the developed method was evaluated and related to three other selected methods for maternal ECG suppression using dedicated coefficients created for this comparison.

目前,无创记录胎儿腹部心电图并分析胎儿心率变异性似乎是检测胎儿缺氧最有前途的方法。主要问题是如何获得高质量的胎儿心电图,胎儿心电图受母体主导能量分量的强烈扭曲。本文提出了一种基于模板母体PQRST复合物测定及其减法的连续周期母体心电图识别与抑制新方法。该方法的效率进行了评估,并与其他三种选择的方法相关联,用于母体ECG抑制,使用专门的系数来进行比较。
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引用次数: 38
Tailoring magnetic field gradient design to magnet cryostat geometry. 剪裁磁场梯度设计磁铁低温恒温器几何。
A Trakic, F Liu, H S Lopez, H Wang, S Crozier

Eddy currents induced within a magnetic resonance imaging (MRI) cryostat bore during pulsing of gradient coils can be applied constructively together with the gradient currents that generate them, to obtain good quality gradient uniformities within a specified imaging volume over time. This can be achieved by simultaneously optimizing the spatial distribution and temporal pre-emphasis of the gradient coil current, to account for the spatial and temporal variation of the secondary magnetic fields due to the induced eddy currents. This method allows the tailored design of gradient coil/magnet configurations and consequent engineering trade-offs. To compute the transient eddy currents within a realistic cryostat vessel, a low-frequency finite-difference time-domain (FDTD) method using total-field scattered-field (TFSF) scheme has been performed and validated.

在梯度线圈脉冲过程中,磁共振成像(MRI)低温恒温器孔内产生的涡流可以与产生它们的梯度电流一起建设性地应用,以在指定的成像体积内随时间获得高质量的梯度均匀性。这可以通过同时优化梯度线圈电流的空间分布和时间预强调来实现,以解释由感应涡流引起的二次磁场的时空变化。这种方法允许定制的梯度线圈/磁铁配置和随之而来的工程权衡设计。为了计算实际低温恒温容器内的瞬态涡流,提出了一种基于全场散射场(tsf)格式的低频时域有限差分(FDTD)方法,并进行了验证。
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引用次数: 0
Discrete Laplacian recordings of the electroenterogram from abdominal surface in humans. 人类腹部表面肠电图的离散拉普拉斯记录。
Gema Prats-Boluda, José L Martinez-de-Juan, Javier Garcia-Casado, José L Guardiola, José L Ponce

The first aim of this study was to obtain the discrete Laplacian of the myoelectric small intestine signal (electroenterogram, EEnG) from bipolar recordings on the abdominal surface in humans. In addition, the objective was to identify the slow wave (SW) component of the EEnG in the estimated Laplacian, as well as to compare this signal with the bipolar surface recordings. It was carried out 8 recording sessions in 6 healthy volunteers. The discrete Laplacian of the surface potential was performed using Hjorth's Laplacian estimation method. In order to identify the SW component of the EEnG, an adaptive filter, which removes breath interference from abdominal surface recordings, was designed. After that, periodograms and their dominant frequency were obtained. The results show that this frequency, in all surface recording channels and in their corresponding Laplacian, ranges from 0.12 to 0.16 Hz (7.3 to 9.8 cycles per minute) inside of the SW frequency range, whereas the frequencies of the respiration ranges from 0.21 to 0.31 Hz (12.9-18.4 cpm). Furthermore abdominal surface Laplacian potential contains averaged SW, information unless any bipolar surface channel do not record properly this signal. Consequently EEnG surface recordings can become a low cost technique to study bowel motility non-invasively.

本研究的第一个目的是从人类腹部表面的双极记录中获得肌电小肠信号(肠电图,eng)的离散拉普拉斯函数。此外,目的是在估计的拉普拉斯信号中识别eeg的慢波(SW)分量,并将该信号与双极表面记录进行比较。在6名健康志愿者中进行了8次录音。采用Hjorth的拉普拉斯估计法对表面电位进行离散拉普拉斯估计。为了识别eeg的SW分量,设计了一种自适应滤波器,去除腹部表面记录中的呼吸干扰。然后得到周期图及其主导频率。结果表明,在所有表面记录通道及其相应的拉普拉斯函数中,该频率在SW频率范围内的范围为0.12 ~ 0.16 Hz (7.3 ~ 9.8 cycles / min),而呼吸频率范围为0.21 ~ 0.31 Hz (12.9 ~ 18.4 cpm)。此外,腹部表面拉普拉斯电位包含平均的SW信息,除非任何双极表面通道没有正确记录该信号。因此,脑电图表面记录可以成为一种低成本的无创研究肠蠕动的技术。
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引用次数: 0
Identification of the slow wave of bowel myoelectrical surface recording by empirical mode decomposition. 用经验模态分解识别肠肌电表面记录慢波。
Yiyao Ye, J Garcia-Casado, J L Martinez-de-Juan, J L Guardiola, J L Ponce

Surface electroenterogram (EEnG) is a non-invasive method to study bowel myoelectrical activity. Nevertheless, surface recorded EEnG is contaminated by respiratory, motion artifacts, and other interferences. The goal of this paper is to remove the respiration artifact and ultra-low frequency components from surface EEnG by means of empirical mode decomposition (EMD). Seven recording sessions on abdominal surface of three Beagle dogs were conducted. Power percentages of interferences and of fundamental slow wave were calculated before and after the application of the method. The results show that the interference power is significantly reduced (23 +/- 16% vs. 5 +/- 4%), and fundamental slow wave power is significantly increased (59 +/- 17% vs. 76 +/- 13%). Therefore, the EMD method can be helpful to remove respiration and ultra-low frequency components from the external EEnG recordings.

表面肠电图(EEnG)是一种研究肠肌电活动的无创方法。然而,表面记录的eeg受到呼吸、运动伪影和其他干扰的污染。本文的目的是通过经验模态分解(EMD)去除表面eeg中的呼吸伪影和超低频成分。对3只Beagle犬腹部进行了7次记录。计算了应用该方法前后的干扰功率百分比和基波慢波功率百分比。结果表明,干涉功率显著降低(23 +/- 16% vs. 5 +/- 4%),基波慢波功率显著提高(59 +/- 17% vs. 76 +/- 13%)。因此,EMD方法可以帮助从外部eeg记录中去除呼吸和超低频成分。
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引用次数: 5
Peptide-nanoparticle hybrid SERS probe for dynamic detection of active cancer biomarker enzymes. 肽-纳米颗粒复合SERS探针动态检测活性癌症生物标志物酶。
Gang L Liu, F Frank Chen, Jonathan A Ellman, Luke P Lee

Real-time in situ detection of protease enzymes is crucial for early-stage cancer screening and cell signaling pathway study; however it is difficult to be realized using fluorescence or radioactive probes. Here we devise a hybrid optical probe by incorporating nanocrescent particle and peptides with artificial tag molecules. The peptides have high specificity to PSA, one of the most prominent prostate cancer markers, and a serine protease present in patients' seminal fluid and serum. The extrinsic Raman spectral signal from the tag molecules is enhanced by the nanocrescent and the signal is monitored as the indicator for the peptide digestion in nanomolar PSA concentration and femtoliter reaction volume. Sensitive detection of cancer-related serine protease activity of PSA proteins in low concentrations and small volumes of biofluid is critical to early cancer diagnosis, clinical staging, and therapy. The high reaction specificity of the peptide and the monitored extrinsic Raman signal also minimizes the false detection of other serine proteases and intrinsic Raman signal, which results in a high-fidelity and high-signal-to-noise-ratio cancer nanoprobe. Peptide-conjugated nanocrescents should also be applicable for measuring the intercellular and intracellular activity of other cancer-related proteases and protease activity profiling-enabled cancer cell identification.

蛋白酶的实时原位检测对早期癌症筛查和细胞信号通路研究至关重要;但是用荧光或放射性探针很难实现。在此,我们设计了一种混合光学探针,将纳米新月粒子和带有人工标签分子的肽结合在一起。这些肽对PSA(前列腺癌最重要的标志物之一)和存在于患者精液和血清中的丝氨酸蛋白酶具有高特异性。标签分子的外部拉曼光谱信号被纳米新月增强,并作为肽消化的指标在纳米摩尔PSA浓度和飞升反应体积下进行监测。在低浓度和小体积的生物液中检测PSA蛋白的癌症相关丝氨酸蛋白酶活性对早期癌症诊断、临床分期和治疗至关重要。该肽的高反应特异性和监测的外部拉曼信号也最大限度地减少了对其他丝氨酸蛋白酶和内部拉曼信号的错误检测,从而实现了高保真度和高信噪比的癌症纳米探针。肽偶联纳米月牙也可用于测量其他癌症相关蛋白酶的细胞间和细胞内活性,以及蛋白酶活性谱分析使癌细胞识别成为可能。
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引用次数: 7
An optical fiber photoplethysmographic system for central nervous system tissue. 一种用于中枢神经系统组织的光纤光体积描记系统。
Justin P Phillips, Panayiotis A Kyriacou, Kuriakose J George, John V Priestley, Richard M Langford

A new system for measuring the oxygen saturation of blood within tissue has been developed, for a number of potential patient monitoring applications. This proof of concept project aims to address the unmet need of real-time measurement of oxygen saturation in the central nervous system (CNS) for patients recovering from neurosurgery or trauma, by developing a fiber optic signal acquisition system for internal placement through small apertures. The development and testing of a two-wavelength optical fiber reflectance photoplethysmography (PPG) system is described. It was found that good quality red and near-infrared PPG signals could be consistently obtained from the human fingertip (n=6) and rat spinal cord (n=6) using the fiber optic probe. These findings justify further development and clinical evaluation of this fiber optic system.

一种用于测量组织内血液氧饱和度的新系统已经开发出来,用于许多潜在的患者监测应用。该概念验证项目旨在通过开发一种通过小孔径内部放置的光纤信号采集系统,解决神经外科手术或创伤恢复患者对中枢神经系统(CNS)氧饱和度实时测量的未满足需求。介绍了一种双波长光纤反射光体积脉搏波(PPG)系统的研制与测试。研究发现,利用光纤探针可以从人的指尖(n=6)和大鼠的脊髓(n=6)连续获得高质量的红色和近红外PPG信号。这些发现证明了该光纤系统的进一步发展和临床评价。
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引用次数: 11
Analysis of the surgery task for the force feedback amplification in the minimally invasive surgical system. 微创手术系统中力反馈放大的手术任务分析。
Phongsaen Pitakwatchara, Shin-ichi Warisawa, Mamoru Mitsuishi

This paper presents a new method of amplifying the small reaction force in the minimally invasive surgical system according to the surgeon's intended action. For this purpose, the analysis of the laparoscopic cholecystectomy procedure is first studied. The procedure is broken down and analyzed for the necessary forceps actions based on the degrees of freedom of the surgical tool and the task to be performed. For this system, there are seven necessary forceps actions. Then the concept of the force feedback augmentation has been proposed. It amplifies the small reaction force in specific directions according to the surgeon's intended action. Each action determines how the reaction force should be amplified.

本文提出了一种根据外科医生的预期动作放大微创手术系统中小反作用力的新方法。为此,本文首先对腹腔镜胆囊切除术进行分析。根据手术工具的自由度和要执行的任务,对该程序进行分解并分析必要的钳动作。对于这个系统,有七个必要的钳动作。然后提出了力反馈增强的概念。它根据外科医生的预期动作在特定方向上放大小反作用力。每个动作决定了反作用力应该如何被放大。
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引用次数: 3
期刊
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference
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