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Multilevel State-Space Models Enable High Precision Event Related Potential Analysis. 多层次状态空间模型实现了高精度事件相关潜能分析。
Pub Date : 2023-10-01 DOI: 10.1109/IEEECONF59524.2023.10476951
Proloy Das, Mingjian He, Patrick L Purdon

During cognitive tasks, the elicited brain responses that are time-locked to the stimulus presentation are manifested in electroencephalogram (EEG) as Event Related Potentials (ERPs). In general, ERPs are ~ 1 μ V signals embedded in the background of much stronger neural oscillations, and thus they are traditionally extracted by averaging hundreds of trial responses so that the neural oscillations can cancel out each other. However, often in cognitive science experiments, it is difficult to administer large number of trials due to physical constraints. Additionally, these excessive averaging can also blur fine structures of the ERPs signals, which might otherwise be indicative of various intrinsic factors. Here we propose to model the background oscillations using a novel oscillation state-space representation and identify their time-traces in a data-driven way. This allows us to effectively separate the oscillations from the response signals of interest, thus improving the signal-to-noise of the evoked response, and eventually increasing trial fidelity. We also consider a random-walk like continuity constraint for the ERP waveforms to recover smooth, de-noised estimates. We employ a generalized expectation maximization algorithm for estimating the model parameters, and then infer the approximate posterior distribution of ERP waveforms. We demonstrate the reduced reliance of our proposed ERP extraction technique via a simulation study. Finally, we showcase how the extracted ERPs using our method can be more informative than the traditional average-based ERPs when analyzing EEG data in cognitive task settings with fewer trials.

在认知任务中,与刺激呈现时间锁定的大脑反应在脑电图(EEG)中表现为事件相关电位(ERP)。一般来说,ERPs 是约 1 μ V 的信号,其背景是更强的神经振荡,因此传统上是通过平均数百次试验反应来提取ERPs,这样神经振荡就可以相互抵消。然而,在认知科学实验中,由于物理条件的限制,通常很难进行大量的试验。此外,过度的平均化还会模糊ERPs信号的精细结构,而这些信号本来可能是各种内在因素的指示。在此,我们建议使用一种新颖的振荡状态空间表示法对背景振荡进行建模,并以数据驱动的方式识别其时间轨迹。这样,我们就能有效地将振荡与感兴趣的反应信号分离开来,从而改善诱发反应的信噪比,最终提高试验的保真度。我们还为 ERP 波形考虑了类似随机漫步的连续性约束,以恢复平滑、去噪的估计值。我们采用广义期望最大化算法来估计模型参数,然后推断出 ERP 波形的近似后验分布。我们通过模拟研究证明了我们提出的 ERP 提取技术降低了依赖性。最后,我们展示了在分析试验次数较少的认知任务设置中的脑电图数据时,使用我们的方法提取的 ERP 如何比传统的基于平均值的 ERP 更有参考价值。
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引用次数: 0
A novel method for 12-lead ECG reconstruction. 12 导联心电图重建新方法
Pub Date : 2023-10-01 DOI: 10.1109/ieeeconf59524.2023.10476822
Dorsa EPMoghaddam, Anton Banta, Allison Post, Mehdi Razavi, Behnaam Aazhang

This paper presents a novel approach to synthesize a standard 12-lead electrocardiogram (ECG) from any three independent ECG leads using a patient-specific encoder-decoder convolutional neural network. The objective is to decrease the number of recording locations required to obtain the same information as a 12-lead ECG, thereby enhancing patients' comfort during the recording process. We evaluate the proposed algorithm on a dataset comprising fifteen patients, as well as a randomly selected cohort of patients from the PTB diagnostic database. To evaluate the precision of the reconstructed ECG signals, we present two metrics: the correlation coefficient and root mean square error. Our proposed method achieves superior performance compared to most existing synthesis techniques, with an average correlation coefficient of 0.976 and 0.97 for datasets, respectively. These results demonstrate the potential of our approach to improve the efficiency and comfort of ECG recording for patients, while maintaining high diagnostic accuracy.

本文提出了一种新颖的方法,利用患者特定的编码器-解码器卷积神经网络,从任意三个独立的心电图导联合成标准的 12 导联心电图(ECG)。目的是减少获得与 12 导联心电图相同信息所需的记录位置数量,从而提高患者在记录过程中的舒适度。我们在由 15 名患者组成的数据集以及从 PTB 诊断数据库中随机抽取的一组患者中对所提出的算法进行了评估。为了评估重建心电信号的精确度,我们提出了两个指标:相关系数和均方根误差。与大多数现有的合成技术相比,我们提出的方法性能更优越,数据集的平均相关系数分别为 0.976 和 0.97。这些结果表明,我们的方法有潜力提高患者心电图记录的效率和舒适度,同时保持较高的诊断准确性。
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引用次数: 0
Topological Knowledge Distillation for Wearable Sensor Data. 可穿戴传感器数据的拓扑知识提取。
Pub Date : 2022-10-01 Epub Date: 2023-03-07 DOI: 10.1109/ieeeconf56349.2022.10052019
Eun Som Jeon, Hongjun Choi, Ankita Shukla, Yuan Wang, Matthew P Buman, Pavan Turaga

Converting wearable sensor data to actionable health insights has witnessed large interest in recent years. Deep learning methods have been utilized in and have achieved a lot of successes in various applications involving wearables fields. However, wearable sensor data has unique issues related to sensitivity and variability between subjects, and dependency on sampling-rate for analysis. To mitigate these issues, a different type of analysis using topological data analysis has shown promise as well. Topological data analysis (TDA) captures robust features, such as persistence images (PI), in complex data through the persistent homology algorithm, which holds the promise of boosting machine learning performance. However, because of the computational load required by TDA methods for large-scale data, integration and implementation has lagged behind. Further, many applications involving wearables require models to be compact enough to allow deployment on edge-devices. In this context, knowledge distillation (KD) has been widely applied to generate a small model (student model), using a pre-trained high-capacity network (teacher model). In this paper, we propose a new KD strategy using two teacher models - one that uses the raw time-series and another that uses persistence images from the time-series. These two teachers then train a student using KD. In essence, the student learns from heterogeneous teachers providing different knowledge. To consider different properties in features from teachers, we apply an annealing strategy and adaptive temperature in KD. Finally, a robust student model is distilled, which utilizes the time series data only. We find that incorporation of persistence features via second teacher leads to significantly improved performance. This approach provides a unique way of fusing deep-learning with topological features to develop effective models.

近年来,将可穿戴传感器数据转换为可操作的健康见解引起了人们的极大兴趣。深度学习方法已被用于可穿戴设备领域的各种应用,并取得了许多成功。然而,可穿戴传感器数据具有独特的问题,涉及受试者之间的敏感性和可变性,以及对分析采样率的依赖性。为了缓解这些问题,使用拓扑数据分析的另一种类型的分析也显示出了前景。拓扑数据分析(TDA)通过持久同源算法捕捉复杂数据中的鲁棒特征,如持久图像(PI),有望提高机器学习性能。然而,由于TDA方法对大规模数据所需的计算量,集成和实现滞后。此外,许多涉及可穿戴设备的应用程序要求模型足够紧凑,以允许部署在边缘设备上。在这种情况下,知识提取(KD)已被广泛应用于使用预先训练的高容量网络(教师模型)生成小型模型(学生模型)。在本文中,我们使用两个教师模型提出了一种新的KD策略——一个使用原始时间序列,另一个使用时间序列中的持久性图像。然后,这两位老师用KD训练一名学生。从本质上讲,学生从提供不同知识的异质教师那里学习。为了考虑教师特征的不同性质,我们在KD中应用了退火策略和自适应温度。最后,提取了一个鲁棒的学生模型,该模型仅利用时间序列数据。我们发现,通过第二教师融入持久性特征会显著提高成绩。这种方法提供了一种将深度学习与拓扑特征相融合以开发有效模型的独特方法。
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引用次数: 1
A Hybrid Scattering Transform for Signals with Isolated Singularities. 具有孤立奇异点信号的混合散射变换。
Pub Date : 2021-10-01 DOI: 10.1109/ieeeconf53345.2021.9723364
Michael Perlmutter, Jieqian He, Mark Iwen, Matthew Hirn

The scattering transform is a wavelet-based model of Convolutional Neural Networks originally introduced by S. Mallat. Mallat's analysis shows that this network has desirable stability and invariance guarantees and therefore helps explain the observation that the filters learned by early layers of a Convolutional Neural Network typically resemble wavelets. Our aim is to understand what sort of filters should be used in the later layers of the network. Towards this end, we propose a two-layer hybrid scattering transform. In our first layer, we convolve the input signal with a wavelet filter transform to promote sparsity, and, in the second layer, we convolve with a Gabor filter to leverage the sparsity created by the first layer. We show that these measurements characterize information about signals with isolated singularities. We also show that the Gabor measurements used in the second layer can be used to synthesize sparse signals such as those produced by the first layer.

散射变换是一种基于小波的卷积神经网络模型,最初由S. Mallat提出。Mallat的分析表明,该网络具有理想的稳定性和不变性保证,因此有助于解释卷积神经网络早期层学习的滤波器通常类似于小波的现象。我们的目标是理解在网络的后一层应该使用什么样的过滤器。为此,我们提出了一种双层混合散射变换。在第一层中,我们使用小波滤波器变换对输入信号进行卷积以提高稀疏性,在第二层中,我们使用Gabor滤波器进行卷积以利用第一层创建的稀疏性。我们证明了这些测量表征了具有孤立奇点的信号的信息。我们还表明,第二层中使用的Gabor测量可以用于合成稀疏信号,例如第一层产生的稀疏信号。
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引用次数: 1
A mechanistically interpretable model of the retinal neural code for natural scenes with multiscale adaptive dynamics. 具有多尺度自适应动态的自然场景视网膜神经编码的机械可解释模型。
Pub Date : 2021-10-01 Epub Date: 2022-03-04 DOI: 10.1109/ieeeconf53345.2021.9723187
Xuehao Ding, Dongsoo Lee, Satchel Grant, Heike Stein, Lane McIntosh, Niru Maheswaranathan, Stephen Baccus

The visual system processes stimuli over a wide range of spatiotemporal scales, with individual neurons receiving input from tens of thousands of neurons whose dynamics range from milliseconds to tens of seconds. This poses a challenge to create models that both accurately capture visual computations and are mechanistically interpretable. Here we present a model of salamander retinal ganglion cell spiking responses recorded with a multielectrode array that captures natural scene responses and slow adaptive dynamics. The model consists of a three-layer convolutional neural network (CNN) modified to include local recurrent synaptic dynamics taken from a linear-nonlinear-kinetic (LNK) model [1]. We presented alternating natural scenes and uniform field white noise stimuli designed to engage slow contrast adaptation. To overcome difficulties fitting slow and fast dynamics together, we first optimized all fast spatiotemporal parameters, then separately optimized recurrent slow synaptic parameters. The resulting full model reproduces a wide range of retinal computations and is mechanistically interpretable, having internal units that correspond to retinal interneurons with biophysically modeled synapses. This model allows us to study the contribution of model units to any retinal computation, and examine how long-term adaptation changes the retinal neural code for natural scenes through selective adaptation of retinal pathways.

视觉系统在大范围的时空尺度上处理刺激,单个神经元接收来自数万个神经元的输入,这些神经元的动态范围从几毫秒到几十秒不等。这对创建既能准确捕获视觉计算又能在机械上可解释的模型提出了挑战。在这里,我们提出了一个蝾螈视网膜神经节细胞尖峰反应的模型,用多电极阵列记录了自然场景反应和缓慢的自适应动态。该模型由一个三层卷积神经网络(CNN)组成,该网络经过修改,包含了来自线性-非线性-动力学(LNK)模型的局部循环突触动力学[1]。我们提出了交替的自然场景和均匀场白噪声刺激,旨在参与慢对比度适应。为了克服慢速和快速动态拟合的困难,我们首先优化了所有快速时空参数,然后分别优化了循环慢速突触参数。由此产生的完整模型再现了广泛的视网膜计算,并且具有机械可解释性,其内部单元对应于具有生物物理模型突触的视网膜中间神经元。该模型允许我们研究模型单元对任何视网膜计算的贡献,并检查长期适应如何通过视网膜通路的选择性适应改变自然场景的视网膜神经编码。
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引用次数: 0
Proportionate Adaptive Filters Based on Minimizing Diversity Measures for Promoting Sparsity. 基于最小化多样性措施的比例自适应滤波器,以促进稀疏性。
Pub Date : 2019-11-01 Epub Date: 2020-03-30 DOI: 10.1109/ieeeconf44664.2019.9048716
Ching-Hua Lee, Bhaskar D Rao, Harinath Garudadri

In this paper, a novel way of deriving proportionate adaptive filters is proposed based on diversity measure minimization using the iterative reweighting techniques well-known in the sparse signal recovery (SSR) area. The resulting least mean square (LMS)-type and normalized LMS (NLMS)-type sparse adaptive filtering algorithms can incorporate various diversity measures that have proved effective in SSR. Furthermore, by setting the regularization coefficient of the diversity measure term to zero in the resulting algorithms, Sparsity promoting LMS (SLMS) and Sparsity promoting NLMS (SNLMS) are introduced, which exploit but do not strictly enforce the sparsity of the system response if it already exists. Moreover, unlike most existing proportionate algorithms that design the step-size control factors based on heuristics, our SSR-based framework leads to designing the factors in a more systematic way. Simulation results are presented to demonstrate the convergence behavior of the derived algorithms for systems with different sparsity levels.

本文利用稀疏信号恢复(SSR)领域著名的迭代重权技术,在分集度最小化的基础上,提出了一种推导比例自适应滤波器的新方法。由此产生的最小均方(LMS)型和归一化 LMS(NLMS)型稀疏自适应滤波算法,可以包含在 SSR 中被证明有效的各种多样性度量。此外,通过将算法中多样性度量项的正则化系数设为零,还引入了稀疏性促进 LMS(SLMS)和稀疏性促进 NLMS(SNLMS)算法,这两种算法可以利用系统响应的稀疏性,但并不严格强制系统响应的稀疏性(如果稀疏性已经存在)。此外,与大多数基于启发式设计步长控制因子的现有比例算法不同,我们基于 SSR 的框架能以更系统的方式设计因子。仿真结果展示了衍生算法在不同稀疏程度系统中的收敛行为。
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引用次数: 0
A state-space model for dynamic functional connectivity. 动态功能连接的状态空间模型
Pub Date : 2019-11-01 Epub Date: 2020-03-30 DOI: 10.1109/ieeeconf44664.2019.9048807
Sourish Chakravarty, Zachary D Threlkeld, Yelena G Bodien, Brian L Edlow, Emery N Brown

Dynamic functional connectivity (DFC) analysis involves measuring correlated neural activity over time across multiple brain regions. Significant regional correlations among neural signals, such as those obtained from resting-state functional magnetic resonance imaging (fMRI), may represent neural circuits associated with rest. The conventional approach of estimating the correlation dynamics as a sequence of static correlations from sliding time-windows has statistical limitations. To address this issue, we propose a multivariate stochastic volatility model for estimating DFC inspired by recent work in econometrics research. This model assumes a state-space framework where the correlation dynamics of a multivariate normal observation sequence is governed by a positive-definite matrix-variate latent process. Using this statistical model within a sequential Bayesian estimation framework, we use blood oxygenation level dependent activity from multiple brain regions to estimate posterior distributions on the correlation trajectory. We demonstrate the utility of this DFC estimation framework by analyzing its performance on simulated data, and by estimating correlation dynamics in resting state fMRI data from a patient with a disorder of consciousness (DoC). Our work advances the state-of-the-art in DFC analysis and its principled use in DoC biomarker exploration.

动态功能连通性(DFC)分析包括测量多个脑区随时间变化的相关神经活动。神经信号(如静息态功能磁共振成像(fMRI)获得的神经信号)之间的显著区域相关性可能代表与静息相关的神经回路。传统的方法是从滑动时间窗口中估算相关动态的静态相关序列,这种方法在统计学上存在局限性。为了解决这个问题,我们受计量经济学研究最新成果的启发,提出了一种用于估计 DFC 的多元随机波动模型。该模型假设了一个状态空间框架,其中多变量正态观测序列的相关动态受一个正无限矩阵变量潜过程的控制。在序列贝叶斯估计框架内使用该统计模型,我们利用来自多个脑区的与血氧水平相关的活动来估计相关轨迹的后验分布。我们通过分析这种 DFC 估算框架在模拟数据上的性能,以及估算意识障碍(DoC)患者静息状态 fMRI 数据中的相关动态,证明了它的实用性。我们的工作推动了 DFC 分析及其在意识障碍生物标记探索中的原则性应用的最新发展。
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引用次数: 0
Detecting Causality using Deep Gaussian Processes. 使用深度高斯过程检测因果关系。
Pub Date : 2019-11-01 Epub Date: 2020-03-30 DOI: 10.1109/IEEECONF44664.2019.9048963
Guanchao Feng, J Gerald Quirk, Petar M Djurić

Convergent cross mapping (CCM) is a state space reconstruction (SSR)-based method designed for causal discovery in coupled time series, where Granger causality may not be applicable due to a separability assumption. However, CCM requires a large number of observations and is not robust to observation noise which limits its applicability. Moreover, in CCM and its variants, the SSR step is mostly implemented with delay embedding where the parameters for reconstruction usually need to be selected using grid search-based methods. In this paper, we propose a Bayesian version of CCM using deep Gaussian processes (DGPs), which are naturally connected with deep neural networks. In particular, we adopt the framework of SSR-based causal discovery and carry out the key steps using DGPs within a non-parametric Bayesian probabilistic framework in a principled manner. The proposed approach is first validated on simulated data and then tested on data used in obstetrics for monitoring the well-being of fetuses, i.e., fetal heart rate (FHR) and uterine activity (UA) signals in the last two hours before delivery. Our results indicate that UA affects the FHR, which agrees with recent clinical studies.

收敛交叉映射(CCM)是一种基于状态空间重构(SSR)的方法,设计用于在耦合时间序列中发现因果关系,其中格兰杰因果关系可能由于可分性假设而不适用。然而,CCM需要大量的观测值,并且对观测噪声的鲁棒性不强,限制了其适用性。此外,在CCM及其变体中,SSR步骤大多是通过延迟嵌入实现的,通常需要使用基于网格搜索的方法选择重建参数。在本文中,我们提出了一个贝叶斯版本的CCM,使用深度高斯过程(DGPs),它与深度神经网络自然相连。特别是,我们采用基于ssr的因果发现框架,并在非参数贝叶斯概率框架内以原则性的方式使用dgp执行关键步骤。提出的方法首先在模拟数据上进行验证,然后在产科用于监测胎儿健康的数据上进行测试,即分娩前最后两小时的胎儿心率(FHR)和子宫活动(UA)信号。我们的研究结果表明,UA影响FHR,这与最近的临床研究一致。
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引用次数: 3
Accelerated Simultaneous Multi-Slice MRI using Subject-Specific Convolutional Neural Networks. 利用特定受试者卷积神经网络加速同步多切片磁共振成像。
Pub Date : 2018-10-01 Epub Date: 2019-02-21 DOI: 10.1109/ACSSC.2018.8645313
Chi Zhang, Steen Moeller, Sebastian Weingärtner, Kâmil Uğurbil, Mehmet Akçakaya

Simultaneous multi-slice or multi-band (SMS/MB) imaging allows accelerated coverage in magnetic resonance imaging (MRI). Multiple slices are excited and acquired at the same time, and reconstructed using the redundancies in receiver coil arrays, similar to parallel imaging. SMS/MB reconstruction is currently performed with linear reconstruction techniques. Recently, a nonlinear reconstruction method for parallel imaging, Robust Artificial-neural-networks for k-space Interpolation (RAKI) was proposed and shown to improve upon linear methods. This method uses convolutional neural networks (CNN) trained solely on subject-specific calibration data. In this study, we sought to extend RAKI to SMS/MB imaging reconstruction. CNN training was performed on calibration data acquired prior to SMS/MB imaging, in a manner consistent with the existing linear methods. These CNNs were used to reconstruct a time series of functional MRI (fMRI) data. CNN network parameters were optimized using an extensive search of the parameter space. With these optimal parameters, RAKI substantially improves image quality compared to a commonly used linear reconstruction algorithm, especially for high acceleration rates.

同步多切片或多波段(SMS/MB)成像可加速磁共振成像(MRI)的覆盖范围。多个切片同时被激发和采集,并利用接收线圈阵列中的冗余进行重建,类似于平行成像。SMS/MB 重建目前采用线性重建技术。最近,一种用于平行成像的非线性重建方法--用于 k 空间插值的鲁棒人工神经网络(RAKI)被提出,并被证明能改进线性方法。该方法使用卷积神经网络(CNN),仅根据特定对象的校准数据进行训练。在这项研究中,我们试图将 RAKI 扩展到 SMS/MB 成像重建。我们采用与现有线性方法一致的方式,对 SMS/MB 成像前获取的校准数据进行 CNN 训练。这些 CNN 被用于重建功能性 MRI(fMRI)数据的时间序列。通过对参数空间的广泛搜索,对 CNN 网络参数进行了优化。与常用的线性重建算法相比,RAKI 利用这些最佳参数大大提高了图像质量,尤其是在高加速率的情况下。
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引用次数: 0
A Wearable Platform for Research in Augmented Hearing. 用于增强听力研究的可穿戴平台。
Pub Date : 2018-10-01 Epub Date: 2019-02-21 DOI: 10.1109/ACSSC.2018.8645557
Louis Pisha, Sean Hamilton, Dhiman Sengupta, Ching-Hua Lee, Krishna Chaithanya Vastare, Tamara Zubatiy, Sergio Luna, Cagri Yalcin, Alex Grant, Rajesh Gupta, Ganz Chockalingam, Bhaskar D Rao, Harinath Garudadri

We have previously reported a realtime, open-source speech-processing platform (OSP) for hearing aids (HAs) research. In this contribution, we describe a wearable version of this platform to facilitate audiological studies in the lab and in the field. The system is based on smartphone chipsets to leverage power efficiency in terms of FLOPS/watt and economies of scale. We present the system architecture and discuss salient design elements in support of HA research. The ear-level assemblies support up to 4 microphones on each ear, with 96 kHz, 24 bit codecs. The wearable unit runs OSP Release 2018c on top of 64-bit Debian Linux for binaural HA with an overall latency of 5.6 ms. The wearable unit also hosts an embedded web server (EWS) to monitor and control the HA state in realtime. We describe three example web apps in support of typical audiological studies they enable. Finally, we describe a baseline speech enhancement module included with Release 2018c, and describe extensions to the algorithms as future work.

我们之前已经报道了一个用于助听器研究的实时、开源语音处理平台(OSP)。在这篇文章中,我们描述了该平台的可穿戴版本,以促进实验室和现场的听力学研究。该系统基于智能手机芯片组,在FLOPS/瓦和规模经济方面利用功率效率。我们介绍了系统架构,并讨论了支持HA研究的重要设计元素。耳朵级组件支持每只耳朵上最多4个麦克风,带有96 kHz、24位编解码器。可穿戴单元在64位Debian Linux上运行OSP Release 2018c,用于双耳HA,总延迟为5.6毫秒。可穿戴单元还托管嵌入式web服务器(EWS),以实时监控HA状态。我们描述了三个示例网络应用程序,以支持它们所支持的典型听力学研究。最后,我们描述了Release 2018c中包含的基线语音增强模块,并将算法的扩展描述为未来的工作。
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引用次数: 0
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Conference record. Asilomar Conference on Signals, Systems & Computers
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