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Granulomatous inflammatory responses are elicited in the liver of PD-1 knockout mice by de novo genome mutagenesis. PD-1基因敲除小鼠肝脏中的肉芽肿炎症反应是通过从头基因组突变引起的。
Pub Date : 2024-12-25 eCollection Date: 2025-01-01 DOI: 10.1093/discim/kyae018
Ilamangai Nagaretnam, Yoshiya Kakimoto, Azusa Yoneshige, Fuka Takeuchi, Takayuki Sakimura, Kanato Sato, Yoshiro Osaki, Yuta Ishii, Ai Ozaki, Masaru Tamura, Michito Hamada, Toshiaki Shigeoka, Akihiko Ito, Yasumasa Ishida

Introduction: Programmed death-1 (PD-1) is a negative regulator of immune responses. Upon deletion of PD-1 in mice, symptoms of autoimmunity developed only after they got old. In a model experiment in cancer immunotherapy, PD-1 was shown to prevent cytotoxic T lymphocytes from attacking cancer cells that expressed neoantigens derived from genome mutations. Furthermore, the larger number of genome mutations in cancer cells led to more robust anti-tumor immune responses after the PD-1 blockade. To understand the common molecular mechanisms underlying these findings, we hypothesize that we might have acquired PD-1 during evolution to avoid/suppress autoimmune reactions against neoantigens derived from mutations in the genome of aged individuals.

Methods: To test the hypothesis, we introduced random mutations into the genome of young PD-1-/- and PD-1+/+ mice. We employed two different procedures of random mutagenesis: administration of a potent chemical mutagen N-ethyl-N-nitrosourea (ENU) into the peritoneal cavity of mice and deletion of MSH2, which is essential for the mismatch-repair activity in the nucleus and therefore for the suppression of accumulation of random mutations in the genome.

Results: We observed granulomatous inflammatory changes in the liver of the ENU-treated PD-1 knockout (KO) mice but not in the wild-type (WT) counterparts. Such lesions also developed in the PD-1/MSH2 double KO mice but not in the MSH2 single KO mice.

Conclusion: These results support our hypothesis about the physiological function of PD-1 and address the mechanistic reasons for immune-related adverse events observed in cancer patients having PD-1-blockade immunotherapies.

程序性死亡-1 (PD-1)是免疫应答的负调节因子。在小鼠体内缺失PD-1后,自身免疫症状只有在它们变老后才会出现。在癌症免疫治疗的模型实验中,PD-1被证明可以阻止细胞毒性T淋巴细胞攻击表达来自基因组突变的新抗原的癌细胞。此外,在PD-1阻断后,癌细胞中大量的基因组突变导致了更强的抗肿瘤免疫反应。为了理解这些发现背后的共同分子机制,我们假设我们可能在进化过程中获得了PD-1,以避免/抑制针对来自老年人基因组突变的新抗原的自身免疫反应。方法:为了验证这一假设,我们在年轻的PD-1-/-和PD-1+/+小鼠基因组中引入了随机突变。我们采用了两种不同的随机诱变程序:将一种强效的化学诱变剂n -乙基-n -亚硝基脲(ENU)注入小鼠腹腔,并删除对细胞核错配修复活性至关重要的MSH2,从而抑制基因组中随机突变的积累。结果:我们在enu处理的PD-1敲除(KO)小鼠的肝脏中观察到肉芽肿性炎症变化,而在野生型(WT)小鼠中则没有。PD-1/MSH2双KO小鼠也出现这种病变,但MSH2单KO小鼠没有出现这种病变。结论:这些结果支持了我们关于PD-1生理功能的假设,并解决了PD-1阻断免疫治疗癌症患者免疫相关不良事件的机制原因。
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引用次数: 0
The sedoheptulose kinase CARKL controls T-cell cytokine outputs and migration by promoting metabolic reprogramming. sedoheptulose kinase CARKL通过促进代谢重编程来控制t细胞细胞因子的输出和迁移。
Pub Date : 2024-11-19 eCollection Date: 2024-01-01 DOI: 10.1093/discim/kyae016
Michelangelo Certo, Jennifer Niven, Robert Haas, Paula Rudzinska, Joanne Smith, Danilo Cucchi, Jose R Hombrebueno, Claudio Mauro

Background: Immunometabolism is a crucial determinant of immune cell function, influencing cellular activation and differentiation through metabolic pathways. The intricate interplay between metabolism and immune responses is highlighted by the distinct metabolic programs utilized by immune cells to support their functions. Of particular interest is the pentose phosphate pathway (PPP), a key metabolic pathway branching out of glycolysis that plays a pivotal role in generating NADPH and pentose sugars crucial for antioxidant defense and biosynthesis. The sedoheptulose kinase Carbohydrate Kinase-like protein (CARKL), an enzyme involved in the PPP, emerges as a critical regulator of cell metabolism and was previously shown to play a role in macrophage function.

Methods: This study delves into the impact of CARKL expression on T-cell functionality, revealing dynamic alterations in response to cellular activation. Notably, CARKL overexpression leads to significant metabolic shifts in T cells, affecting mitochondrial respiration, ATP production, and inflammatory cytokine profiles. Furthermore, CARKL modulation influences T-cell motility by regulating chemokine receptor expression, particularly compromising CXCR3 expression and impairing T-cell migration in response to specific chemokine signals.

Conclusions: These findings underscore the multifaceted role of CARKL as a metabolic regulator shaping T-cell responses. Overall, our data reveal the complex regulatory mechanisms orchestrated by CARKL in T-cell function, with implications for immune regulation. Further exploration of the molecular interactions between CARKL and metabolic reprogramming in T cells could provide valuable insights into immune regulation and potential therapeutic strategies.

背景:免疫代谢是决定免疫细胞功能的关键因素,它通过代谢途径影响细胞的活化和分化。免疫细胞利用不同的代谢程序来支持其功能,这凸显了新陈代谢与免疫反应之间错综复杂的相互作用。磷酸戊糖途径(PPP)尤其引人关注,它是糖酵解分支的一条关键代谢途径,在生成 NADPH 和对抗氧化防御和生物合成至关重要的戊糖方面发挥着关键作用。参与 PPP 的一种酶--沉淀七聚糖激酶碳水化合物激酶样蛋白(CARKL)成为细胞新陈代谢的一个关键调节因子,并且以前曾被证明在巨噬细胞功能中发挥作用:本研究深入探讨了 CARKL 表达对 T 细胞功能的影响,揭示了细胞活化过程中的动态变化。值得注意的是,CARKL的过表达会导致T细胞发生显著的代谢转变,影响线粒体呼吸、ATP生成和炎症细胞因子谱。此外,CARKL调控通过调节趋化因子受体的表达影响T细胞的运动性,尤其是影响CXCR3的表达,并损害T细胞对特定趋化因子信号的迁移:这些发现强调了 CARKL 作为影响 T 细胞反应的代谢调节因子的多方面作用。总之,我们的数据揭示了 CARKL 在 T 细胞功能中的复杂调控机制,并对免疫调节产生了影响。进一步探索 CARKL 与 T 细胞代谢重编程之间的分子相互作用,可为免疫调节和潜在治疗策略提供有价值的见解。
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引用次数: 0
How (Eco)immunology can augment global EcoHealth programmes: opportunities, needs, and challenges. 生态)免疫学如何增强全球生态健康计划:机遇、需求和挑战。
Pub Date : 2024-10-15 eCollection Date: 2024-01-01 DOI: 10.1093/discim/kyae015
Sheena M Cruickshank, Kathryn J Else, Iris Mair, Holly Shiels, Susanne Shultz

Graphical Abstract.

图形摘要。
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引用次数: 0
Unravelling monocyte functions: from the guardians of health to the regulators of disease. 揭示单核细胞的功能:从健康的守护者到疾病的调节者。
Pub Date : 2024-08-30 eCollection Date: 2024-01-01 DOI: 10.1093/discim/kyae014
Alexander Mildner, Ki-Wook Kim, Simon Yona

Monocytes are a key component of the innate immune system. They undergo intricate developmental processes within the bone marrow, leading to diverse monocyte subsets in the circulation. In a state of healthy homeostasis, monocytes are continuously released into the bloodstream, destined to repopulate specific tissue-resident macrophage pools where they fulfil tissue-specific functions. However, under pathological conditions monocytes adopt various phenotypes to resolve inflammation and return to a healthy physiological state. This review explores the nuanced developmental pathways and functional roles that monocytes perform, shedding light on their significance in both physiological and pathological contexts.

单核细胞是先天性免疫系统的关键组成部分。它们在骨髓中经历了复杂的发育过程,从而在血液循环中形成多种单核细胞亚群。在健康的平衡状态下,单核细胞不断被释放到血液中,重新填充到特定组织驻留的巨噬细胞池中,发挥组织特异性功能。然而,在病理条件下,单核细胞会采用各种表型来消除炎症并恢复到健康的生理状态。这篇综述探讨了单核细胞细微的发育途径和功能作用,揭示了它们在生理和病理环境中的意义。
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引用次数: 0
Identification of a transcription factor network regulating anti-TNF mediated IL10 expression in human CD4+ T cells 识别调控人类 CD4+ T 细胞中由抗肿瘤坏死因子介导的 IL10 表达的转录因子网络
Pub Date : 2024-07-27 DOI: 10.1093/discim/kyae013
G. A. Povoleri, M. Ridley, Rebecca J Marrow, Sylvine Lalnunhlimi, Sarah E. Ryan, Audrey Kelly, Paul Lavender, L. Taams
CD4+ T cells are key players in immune-mediated inflammatory diseases (IMIDs) through production of inflammatory mediators including TNF. Anti-TNF therapy has revolutionised the treatment of several IMIDs and we previously demonstrated that in vitro treatment of human CD4+ T cells with anti-TNF promotes anti-inflammatory IL-10 expression in multiple subpopulations of CD4+ T cells. Here we investigated the transcriptional mechanisms underlying the IL-10 induction by TNF-blockade in CD4+ T cells, isolated from PBMCs of healthy volunteers, stimulated in vitro for 3 days with anti-CD3/CD28 mAb in the absence or presence of anti-TNF. After culture, CD45RA+ cells were depleted before performing gene expression profiling and chromatin accessibility analysis. Gene expression analysis of CD45RA-CD4+ T cells showed a distinct anti-TNF specific gene signature of 183 genes (q-value <0.05). Pathway enrichment analysis of differentially expressed genes revealed multiple pathways related to cytokine signalling and regulation of cytokine production; in particular, IL10 was the most upregulated gene by anti-TNF, while the proinflammatory cytokines and chemokines IFNG, IL9, IL22 and CXCL10 were significantly downregulated (q-value <0.05). Transcription factor motif analysis at the differentially open chromatin regions, after anti-TNF treatment, revealed 58 transcription factor motifs enriched at the IL10 locus. We identified seven transcription factor candidates for the anti-TNF mediated regulation of IL-10, which were either differentially expressed or whose locus was differentially accessible upon anti-TNF treatment. Correlation analysis between the expression of these transcription factors and IL10 suggests a role for MAF, PRDM1 and/or EOMES in regulating IL10 expression in CD4+ T cells upon anti-TNF treatment.
CD4+ T 细胞通过产生包括 TNF 在内的炎症介质,在免疫介导的炎症性疾病(IMID)中发挥着关键作用。抗 TNF 疗法彻底改变了几种 IMID 的治疗方法,我们以前曾证实,用抗 TNF 体外处理人类 CD4+ T 细胞可促进多个 CD4+ T 细胞亚群中抗炎性 IL-10 的表达。在此,我们研究了TNF阻断对CD4+ T细胞诱导IL-10的转录机制,这些细胞是从健康志愿者的PBMC中分离出来的,在体外用抗CD3/CD28 mAb刺激3天,在没有或有抗TNF的情况下。培养结束后,在进行基因表达谱分析和染色质可及性分析之前,对 CD45RA+ 细胞进行了清除。CD45RA-CD4+ T细胞的基因表达分析表明,183个基因具有明显的抗TNF特异性基因特征(q值<0.05)。差异表达基因的通路富集分析显示了与细胞因子信号传导和细胞因子产生调控相关的多个通路;其中,IL10是抗TNF上调最多的基因,而促炎细胞因子和趋化因子IFNG、IL9、IL22和CXCL10则显著下调(q值<0.05)。通过对抗 TNF 处理后不同开放染色质区域的转录因子基序分析,发现 IL10 基因座富集了 58 个转录因子基序。我们确定了 7 个候选转录因子,它们在抗肿瘤坏死因子介导的 IL-10 调控中要么表达不同,要么在抗肿瘤坏死因子处理后其基因座可被不同程度地访问。这些转录因子的表达与IL10之间的相关性分析表明,MAF、PRDM1和/或EOMES在抗TNF治疗时调节CD4+ T细胞中IL10的表达。
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引用次数: 0
Correction to: Lunar-linked biological rhythms in the immune system of freshwater three-spined stickleback. 更正:淡水三刺鱼免疫系统的月相生物节律
Pub Date : 2024-07-15 eCollection Date: 2024-01-01 DOI: 10.1093/discim/kyae012

[This corrects the article DOI: 10.1093/discim/kyae007.].

[This corrects the article DOI: 10.1093/discim/kyae007.].
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引用次数: 0
Assessing immune phenotypes using simple proxy measures: promise and limitations. 使用简单的替代措施评估免疫表型:前景与局限。
Pub Date : 2024-06-28 eCollection Date: 2024-01-01 DOI: 10.1093/discim/kyae010
Alexander E Downie, Ramya S Barre, Annie Robinson, Jennie Yang, Ying-Han Chen, Jian-Da Lin, Oyebola Oyesola, Frank Yeung, Ken Cadwell, P'ng Loke, Andrea L Graham

The study of immune phenotypes in wild animals is beset by numerous methodological challenges, with assessment of detailed aspects of phenotype difficult to impossible. This constrains the ability of disease ecologists and ecoimmunologists to describe immune variation and evaluate hypotheses explaining said variation. The development of simple approaches that allow characterization of immune variation across many populations and species would be a significant advance. Here we explore whether serum protein concentrations and coarse-grained white blood cell profiles, immune quantities that can easily be assayed in many species, can predict, and therefore serve as proxies for, lymphocyte composition properties. We do this in rewilded laboratory mice, which combine the benefits of immune phenotyping of lab mice with the natural context and immune variation found in the wild. We find that easily assayed immune quantities are largely ineffective as predictors of lymphocyte composition, either on their own or with other covariates. Immunoglobulin G (IgG) concentration and neutrophil-lymphocyte ratio show the most promise as indicators of other immune traits, but their explanatory power is limited. Our results prescribe caution in inferring immune phenotypes beyond what is directly measured, but they do also highlight some potential paths forward for the development of proxy measures employable by ecoimmunologists.

对野生动物免疫表型的研究面临着许多方法上的挑战,很难甚至不可能对表型的细节方面进行评估。这限制了疾病生态学家和生态免疫学家描述免疫变异和评估解释这些变异的假设的能力。开发简单的方法来描述许多种群和物种的免疫变异将是一项重大进步。在这里,我们探讨了血清蛋白浓度和粗粒度白细胞图谱这些在许多物种中都很容易测定的免疫数量是否可以预测淋巴细胞的组成特性,并因此作为淋巴细胞组成特性的替代物。我们在野化实验室小鼠中进行了这项研究,这种小鼠将实验室小鼠免疫表型的优点与野外自然环境和免疫变异结合在一起。我们发现,作为淋巴细胞组成的预测因子,无论是单独还是与其他协变量一起使用,容易测定的免疫数量在很大程度上都是无效的。免疫球蛋白 G(IgG)浓度和中性粒细胞-淋巴细胞比率最有希望成为其他免疫特征的指标,但其解释力有限。我们的研究结果表明,在推断直接测量之外的免疫表型时要谨慎,但它们也凸显了开发生态免疫学家可用的替代测量指标的一些潜在途径。
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引用次数: 0
Extracellular vesicles: an emerging tool for wild immunology. 细胞外囊泡:野生免疫学的新兴工具。
Pub Date : 2024-06-24 eCollection Date: 2024-01-01 DOI: 10.1093/discim/kyae011
Camila Espejo, Vanessa O Ezenwa

The immune system is crucial for defending organisms against pathogens and maintaining health. Traditionally, research in immunology has relied on laboratory animals to understand how the immune system works. However, there is increasing recognition that wild animals, due to their greater genetic diversity, lifespan, and environmental exposures, have much to contribute to basic and translational immunology. Unfortunately, logistical challenges associated with collecting and storing samples from wildlife, and the lack of commercially available species-specific reagents have hindered the advancement of immunological research on wild species. Extracellular vesicles (EVs) are cell-derived nanoparticles present in all body fluids and tissues of organisms spanning from bacteria to mammals. Human and lab animal studies indicate that EVs are involved in a range of immunological processes, and recent work shows that EVs may play similar roles in diverse wildlife species. Thus, EVs can expand the toolbox available for wild immunology research, helping to overcome some of the challenges associated with this work. In this paper, we explore the potential application of EVs to wild immunology. First, we review current understanding of EV biology across diverse organisms. Next, we discuss key insights into the immune system gained from research on EVs in human and laboratory animal models and highlight emerging evidence from wild species. Finally, we identify research themes in wild immunology that can immediately benefit from the study of EVs and describe practical considerations for using EVs in wildlife research.

免疫系统是生物体抵御病原体和保持健康的关键。传统上,免疫学研究主要依靠实验室动物来了解免疫系统的工作原理。然而,越来越多的人认识到,由于野生动物的遗传多样性更强、寿命更长、接触的环境更多,它们对基础免疫学和转化免疫学有很大的贡献。遗憾的是,收集和储存野生动物样本所带来的后勤挑战,以及缺乏商业化的物种特异性试剂,阻碍了野生物种免疫学研究的发展。细胞外囊泡 (EV) 是细胞衍生的纳米颗粒,存在于从细菌到哺乳动物的所有生物体液和组织中。人类和实验动物的研究表明,EVs 参与了一系列免疫过程,最近的研究表明,EVs 可能在不同的野生动物物种中发挥类似的作用。因此,EVs 可以扩大野生动物免疫学研究的工具箱,帮助克服与这项工作相关的一些挑战。在本文中,我们探讨了 EVs 在野生免疫学中的潜在应用。首先,我们回顾了目前对不同生物体中 EV 生物学的理解。接下来,我们讨论了从人类和实验室动物模型中的 EVs 研究中获得的有关免疫系统的重要见解,并重点介绍了野生物种中新出现的证据。最后,我们确定了野生免疫学中可以立即从 EVs 研究中获益的研究主题,并介绍了在野生动物研究中使用 EVs 的实际注意事项。
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引用次数: 0
Lunar-linked biological rhythms in the immune system of freshwater three-spined stickleback. 淡水三刺鱼免疫系统的月相生物节律
Pub Date : 2024-05-25 eCollection Date: 2024-01-01 DOI: 10.1093/discim/kyae007
Joseph A Jackson, Alexander Stewart, Joanne Cable

Immune responses are widely accepted to be under circadian regulation via a molecular clock, with many practical consequences, but much less is known of how other biological rhythms could affect the immune system. In this study, we search for lunar rhythms (circalunar, circasemilunar, and circatidal cycles) in the immune expression of the recently marine-derived freshwater fish, the low-plate morph of the three-spined stickleback. We employed time series of immune expression (mRNA) measurements for 14 immune-associated genes, representing a variety of immunological pathways. Times series measurements were taken on fish populations in the wild, in seminatural outdoor mesocosms, and in the laboratory, according to sampling regimens originally designed to study circannual variation but with the additional potential to provide information about lunar variation. Our evidence best supported the existence of a very small endogenous tidal rhythm. This is consistent with previous suggestions of the existence of a primordial tidal endogenous clock, some elements of which may be conserved in animals evolving outside the marine environment.

人们普遍认为免疫反应受分子钟的昼夜节律调节,这带来了许多实际影响,但对其他生物节律如何影响免疫系统却知之甚少。在这项研究中,我们寻找了最近从海洋中衍生的淡水鱼--三刺鱼的低板形态--的免疫表达中的月相节律(昼夜节律、昼夜节律和潮汐周期)。我们对代表各种免疫途径的 14 个免疫相关基因的免疫表达(mRNA)进行了时间序列测量。时间序列测量是在野外、半自然室外中间培养箱和实验室中对鱼类种群进行的,采样方法最初是为了研究环流变化,但也有可能提供有关月球变化的信息。我们的证据最能证明存在很小的内生潮汐节律。这与之前提出的存在原始潮汐内源时钟的观点是一致的,其中的某些元素可能在海洋环境外进化的动物中得以保留。
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引用次数: 0
Adapting for success: T cell features at tissue sites 适应成功:组织部位的 T 细胞特征
Pub Date : 2024-05-18 DOI: 10.1093/discim/kyae009
Philip P Ahern, Emily Gwyer Findlay
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引用次数: 0
期刊
Discovery immunology
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