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Long-Term Suppression of RUNX2 During MSC-Based Cartilage Formation Increases Cartilage Matrix Accumulation. 在msc软骨形成过程中长期抑制RUNX2增加软骨基质积累。
IF 2.3 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-20 eCollection Date: 2025-10-01 DOI: 10.1177/27681572251383462
Ruxin Yang, Tiana J Wong, Rhima M Coleman

The objective of this study was to evaluate the long-term effects of an autonomous RUNX2-supressing gene circuit on cartilage matrix accumulation and compressive mechanics in the tissues produced by MSC-derived chondrocytes (MdChs). Human mesenchymal stem cells (MSCs) were differentiated into chondrocytes and genetically modified using a lentiviral short hairpin RNA (shRNA) targeting RUNX2 (shRUNX2). Two configurations, low and high levels of shRUNX2 expression, were implemented. The influence on RUNX2 suppression, matrix protein secretion, and compressive mechanics was evaluated. Both low and high shRUNX2 suppressed RUNX2 expression, showing significant improvement in cartilage matrix accumulation with increased collagen type II and aggrecan deposition. High shRUNX2 more effectively suppresses RUNX2 gene expression and enhances sulfated glycosaminoglycan and matrix accumulation compared with the control and low shRUNX2 group. This study demonstrates the long-term effect of autonomous RUNX2 suppression in enhancing cartilage matrix accumulation and mechanical properties, providing a promising approach for advancing cartilage tissue engineering and repair strategies.

本研究的目的是评估自主抑制runx2基因回路对msc来源软骨细胞(MdChs)产生的组织中软骨基质积累和压缩力学的长期影响。将人间充质干细胞(MSCs)分化为软骨细胞,并利用靶向RUNX2 (shrinkx2)的慢病毒短发夹RNA (shRNA)进行基因修饰。实现了低水平和高水平表达的两种配置。评估对RUNX2抑制、基质蛋白分泌和压缩力学的影响。低、高水平的萎缩x2均抑制RUNX2的表达,显著改善软骨基质的积累,增加II型胶原和聚集蛋白的沉积。与对照组和低水平的萎缩x2组相比,高水平的萎缩x2能更有效地抑制RUNX2基因的表达,增加硫酸糖胺聚糖和基质的积累。本研究证明了自主抑制RUNX2在增强软骨基质积累和力学性能方面的长期作用,为推进软骨组织工程和修复策略提供了一种有希望的方法。
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引用次数: 0
Exploring structure-function relationships in engineered receptor performance using computational structure prediction. 利用计算结构预测探索工程受体性能中的结构-功能关系。
IF 2.3 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 Epub Date: 2025-02-17 DOI: 10.1089/genbio.2024.0057
William K Corcoran, Amparo Cosio, Hailey I Edelstein, Joshua N Leonard

Engineered receptors play increasingly important roles in transformative cell-based therapies. However, the structural mechanisms that drive differences in performance across receptor designs are often poorly understood. Recent advances in protein structural prediction tools have enabled the modeling of virtually any user-defined protein, but how these tools might build understanding of engineered receptors has yet to be fully explored. In this study, we employed structural modeling tools to perform post hoc analyses to investigate whether predicted structural features might explain observed functional variation. We selected a recently reported library of receptors derived from natural cytokine receptors as a case study, generated structural models, and from these predictions quantified a set of structural features that plausibly impact receptor performance. Encouragingly, for a subset of receptors, structural features explained considerable variation in performance, and trends were largely conserved across structurally diverse receptor sets. This work indicates potential for structure prediction-guided synthetic receptor engineering.

工程受体在转化细胞治疗中发挥着越来越重要的作用。然而,驱动不同受体设计性能差异的结构机制通常知之甚少。蛋白质结构预测工具的最新进展使几乎任何用户定义的蛋白质建模成为可能,但是这些工具如何构建对工程受体的理解尚未得到充分探索。在这项研究中,我们使用结构建模工具进行事后分析,以调查预测的结构特征是否可以解释观察到的功能变化。我们选择了最近报道的来自天然细胞因子受体的受体文库作为案例研究,生成了结构模型,并从这些预测中量化了一组可能影响受体性能的结构特征。令人鼓舞的是,对于一部分受体,结构特征解释了相当大的性能变化,并且在结构不同的受体集中趋势很大程度上是保守的。这项工作为结构预测导向的合成受体工程提供了潜力。
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引用次数: 0
Real-Time Monitoring in Biomanufacturing with Graphene Field-Effect Transistor Sensors: Detection of pH, Glucose, and Antibodies. 石墨烯场效应晶体管传感器在生物制造中的实时监测:pH值、葡萄糖和抗体的检测。
IF 2.3 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-13 eCollection Date: 2024-12-01 DOI: 10.1089/genbio.2024.0043
Deependra K Ban, Reza Hajian, Matthew Chan, Shiva Abdolrahimi, Francie Barron, Saurav Datta, Kiana Aran

In high-efficiency smart biomanufacturing, continuous monitoring of products, byproducts, and reagents is crucial for optimizing production processes, improving yield, and ensuring product quality. This monitoring maintains optimal conditions, reduces waste, and enables swift corrective actions, minimizing the risk of producing out-of-specification products. With advancements in cell-free biomanufacturing, the importance of in-line sensing technologies has increased, as they provide real-time tracking of biochemical processes, allowing immediate adjustments to keep manufacturing efficient and consistent. In this study, we successfully developed a graphene field-effect transistor (gFET) sensor to monitor key parameters such as glucose, pH, and immunoglobulin G antibody levels in cell culture media from a CHO cells bioreactor. The gFET sensor accurately detected pH levels between 6.8 and 8.2, glucose concentrations from 5 to 30 mM, and antibody levels ranging from 25 to 100 µg/mL, highlighting the potential of graphene sensors for inline sensing in advanced biomanufacturing.

在高效智能生物制造中,对产品、副产品和试剂的持续监测对于优化生产流程、提高产量和确保产品质量至关重要。这种监控保持最佳状态,减少浪费,并实现快速纠正措施,最大限度地降低生产不合规格产品的风险。随着无细胞生物制造技术的进步,在线传感技术的重要性也在增加,因为它们可以实时跟踪生化过程,允许立即调整以保持制造效率和一致性。在这项研究中,我们成功开发了一种石墨烯场效应晶体管(gFET)传感器,用于监测CHO细胞生物反应器中细胞培养基中的葡萄糖、pH和免疫球蛋白G抗体水平等关键参数。gFET传感器可准确检测pH值在6.8至8.2之间,葡萄糖浓度在5至30 mM之间,抗体水平在25至100 μ g/mL之间,突出了石墨烯传感器在先进生物制造中的在线传感潜力。
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引用次数: 0
Revolutionizing Postdoctoral Training Using the Social Ecological Model: Insights and Experiences from the Propel Scholars. 利用社会生态模式革新博士后培养:推进学者的见解与经验。
IF 2.3 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-01 Epub Date: 2024-08-16 DOI: 10.1089/genbio.2024.0014
Cellas A Hayes, Colwyn A Headley, Amy R Nava, Edward A Vizcarra, Keith C Garcia, McKay M S Mullen, Josefina Flores Morales, Anthony C Venida, Shawna Follis

The dissatisfaction within the postdoctoral training phase has led to the drastic reduction in the number of U.S. citizens pursuing postdoctoral positions within the biological and biomedical sciences fields. Even more so, there is an obvious disparity in not only the recruitment but the retention among underrepresented groups to pursue careers as academic scientists. The proposed social-ecological model and National Institute of Health advisory committee suggests reforming the postdoctoral training phase to overcome these downward trends and disparities. Importantly, some programs like the Stanford Propel Postdoctoral Program were integrating this framework and recommendations without knowledge that they would be released 2 years later. The goal of the Propel Program is to provide social, cohort, financial, and institutional support to diverse cohorts of postdoctoral trainee to diversify the professoriate. Within this piece, several of the Propel scholars come together to provide their perspectives on how the Propel Program has benefited their postdoctoral training experience.

对博士后培养阶段的不满导致在生物和生物医学科学领域寻求博士后职位的美国公民数量急剧减少。更重要的是,不仅在招聘方面,而且在代表性不足的群体中,追求学术科学家职业的人数也存在明显的差异。拟议的社会生态模式和国立卫生研究院咨询委员会建议改革博士后培训阶段,以克服这些下降趋势和差距。重要的是,一些项目,如斯坦福大学的推进博士后项目,在不知道这些框架和建议将在两年后发布的情况下,整合了这个框架和建议。推进计划的目标是为不同的博士后培训生群体提供社会、群体、财务和制度支持,以使教授多样化。在这篇文章中,几位Propel学者聚集在一起,就Propel项目如何使他们的博士后培训经历受益提供了他们的观点。
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引用次数: 0
A Fluorescent Sex-Sorting Technique for Insects with the Demonstration in Drosophila melanogaster. 以黑腹果蝇为示范的昆虫荧光性别分类技术。
IF 2 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-02-01 Epub Date: 2024-02-15 DOI: 10.1089/genbio.2023.0041
Junru Liu, Danny Rayes, Omar S Akbari

Recent advances in insect genetic engineering offer alternative genetic biocontrol solutions to control populations of pests and disease vectors. While success has been achieved, sex-sorting remains problematic for scaling many genetic biocontrol interventions. Here, we describe the development of a genetically stable sex-sorting technique for female and male selection with a proof of concept in Drosophila melanogaster termed SEPARATOR (Sexing Element Produced by Alternative RNA-splicing of A Transgenic Observable Reporter). This elegant approach utilizes dominantly expressed fluorescent proteins and differentially spliced introns to ensure sex-specific expression. The system has the potential for adaptability to various insect species and application for high-throughput insect sex-sorting.

昆虫基因工程的最新进展为控制害虫和疾病媒介种群提供了可供选择的基因生物控制解决方案。虽然已经取得了成功,但性别分选仍是许多基因生物控制干预措施推广的难题。在这里,我们介绍了一种用于雌性和雄性选择的遗传稳定的性别分类技术,并在黑腹果蝇中进行了概念验证,这种技术被称为 SEPARATOR(通过转基因可观察报告基因的 RNA 替代剪接产生的性别元素)。这种优雅的方法利用显性表达的荧光蛋白和差异剪接的内含子来确保性别特异性表达。该系统具有适应各种昆虫物种和应用于高通量昆虫性别分类的潜力。
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引用次数: 0
The Physical View of the Origin of Genetic Engineering 基因工程起源的物理学观点
Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-07 DOI: 10.1089/genbio.2023.0037
Anna Yakimova, Denis Baranovskii, Sergei A. Ivanov, Peter Shegay, A. D. Kaprin, Ilya D. Klabukov
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引用次数: 0
In Vivo Prime Editing by Lipid Nanoparticle Co-Delivery of Chemically Modified pegRNA and Prime Editor mRNA 通过脂质纳米颗粒共同递送化学修饰的 pegRNA 和 Prime Editor mRNA 进行体内 Prime 编辑
Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 DOI: 10.1089/genbio.2023.0045
Zexiang Chen, Karen Kelly, Hao-Feng Cheng, Xiaolong Dong, Adam K. Hedger, Li Li, E. Sontheimer, Jonathan K. Watts
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引用次数: 0
Point and Click: DNA Polymerase Prime Editors Upgrade Gene Rewriting Arsenal 指点江山DNA 聚合酶主编辑器升级基因改写武器库
Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 DOI: 10.1089/genbio.2023.29120.jdg
Jonathan D. Grinstein
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引用次数: 0
Improved Cell-Type Identification and Comprehensive Mapping of Regulatory Features with Spatial Epigenomics 96-Channel Microfluidic Platform 利用空间表观组学 96 通道微流控平台改进细胞类型鉴定并全面绘制调控特征图
Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 DOI: 10.1089/genbio.2023.0044
Zev Kartiganer, Gumaro Rojas, Machele Riccio, Abigail Tyree, Katelyn Noronha, Molly Wetzel, Joshua Barnett, James McGann, Jennifer Garbarino, Daniel Massucci, Nouroddin Sotoudeh Chafi, Silas Decker, Arianna McDaniels, Jeffrey Sabina, David Levchenko, Jose Perez, Colin Ng, Kenneth Wang
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引用次数: 0
Defining the Rules of Biology in the Age of Genome Writing 在基因组写作时代定义生物学规则
Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2023-12-01 DOI: 10.1089/genbio.2023.29125.awo
A. Woolfson
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GEN biotechnology
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