首页 > 最新文献

Journal of clinical virology plus最新文献

英文 中文
Genomic analysis of SARS-CoV-2 sequences obtained in Tanzania during the pandemic 大流行期间在坦桑尼亚获得的SARS-CoV-2序列的基因组分析
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-04-15 DOI: 10.1016/j.jcvp.2025.100212
Nicholaus P. Mnyambwa , Jinxin Gao , Alex Magesa , Edina Mgimba , Swaminathan Mahesh , Pawan Angra , Juma Kisuse , Clara Lubinza , Lawrence Mapunda , Aman Wilfred , Godfather Kimaro , George P. Judicate , Ambele Eliah , Augustino Msanga , Senkoro Mbazi , Esther Ngadaya , Mukurasi Kokuhabwa , Jackson P. Mushumbusi , Medard Beyanga , Wangeci Gatei , Sayoki Mfinanga

Background

Genomic sequences of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from Tanzania remain scarce in GISAID, thus hindering our understanding of how the pandemic evolved in the country.

Methods

We performed whole genome sequencing on SARS-CoV-2 samples collected between March 2021 and December 2022 to characterize the virus in Tanzania. Nasal and oropharyngeal swabs were collected from patients seeking health care, incoming travelers as well as from outgoing travelers undergoing pre-travel COVID-19 testing (required for flight boarding). Sample collection, and testing were coordinated by the National Public Health Laboratory.

Results

Among 515 samples, 260 (50.49 %) were from outgoing travelers, 227 (44.08 %) Covid-19 suspects seeking care, and 28 (5.44 %) incoming travelers identified at the airport. The majority of the samples came from Dar es Salaam (n = 380, 73.7 %), the country's largest city and the main port of entry. We identified 74 Pango lineages from all the samples, with Omicron 430 (83.50 %) and Delta 79 (15 %) variants being predominant. From the 380 Dar es Salaam samples, 67 Pango lineages were identified, showing both overlapping and unique lineages in each sample type.

Conclusion

Our findings reveal a dynamic circulation of SARS-CoV-2 variants over time, with Delta predominantly observed in 2021 and Omicron in 2022 in Tanzania. The temporal prevalence of the identified lineages was consistent with the global epidemiology of the virus. Sustained and expanded genomic surveillance is recommended to track and respond effectively to emerging variants.
来自坦桑尼亚的严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)的基因组序列在GISAID中仍然很少,因此阻碍了我们对该国大流行如何演变的理解。方法对2021年3月至2022年12月在坦桑尼亚采集的SARS-CoV-2样本进行全基因组测序,以表征该病毒。从寻求医疗保健的患者、入境旅客以及接受旅行前COVID-19检测(登机所需)的出境旅客中收集鼻和口咽拭子。样本收集和检测由国家公共卫生实验室协调。结果515份样本中,260份(50.49%)来自出境旅客,227份(44.08%)来自寻求治疗的Covid-19疑似病例,28份(5.44%)来自机场发现的入境旅客。大多数样本来自该国最大城市和主要入境口岸达累斯萨拉姆(n = 380, 73.7%)。我们从所有样本中鉴定出74个Pango谱系,其中Omicron 430(83.50%)和Delta 79(15%)变体占主导地位。从达累斯萨拉姆的380个样本中,鉴定出67个Pango血统,每种样本类型都显示出重叠和独特的血统。我们的研究结果揭示了SARS-CoV-2变异随时间的动态循环,在坦桑尼亚主要观察到Delta变异在2021年,Omicron变异在2022年。所确定谱系的时间流行率与病毒的全球流行病学一致。建议持续和扩大基因组监测,以跟踪和有效应对新出现的变异。
{"title":"Genomic analysis of SARS-CoV-2 sequences obtained in Tanzania during the pandemic","authors":"Nicholaus P. Mnyambwa ,&nbsp;Jinxin Gao ,&nbsp;Alex Magesa ,&nbsp;Edina Mgimba ,&nbsp;Swaminathan Mahesh ,&nbsp;Pawan Angra ,&nbsp;Juma Kisuse ,&nbsp;Clara Lubinza ,&nbsp;Lawrence Mapunda ,&nbsp;Aman Wilfred ,&nbsp;Godfather Kimaro ,&nbsp;George P. Judicate ,&nbsp;Ambele Eliah ,&nbsp;Augustino Msanga ,&nbsp;Senkoro Mbazi ,&nbsp;Esther Ngadaya ,&nbsp;Mukurasi Kokuhabwa ,&nbsp;Jackson P. Mushumbusi ,&nbsp;Medard Beyanga ,&nbsp;Wangeci Gatei ,&nbsp;Sayoki Mfinanga","doi":"10.1016/j.jcvp.2025.100212","DOIUrl":"10.1016/j.jcvp.2025.100212","url":null,"abstract":"<div><h3>Background</h3><div>Genomic sequences of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from Tanzania remain scarce in GISAID, thus hindering our understanding of how the pandemic evolved in the country.</div></div><div><h3>Methods</h3><div>We performed whole genome sequencing on SARS-CoV-2 samples collected between March 2021 and December 2022 to characterize the virus in Tanzania. Nasal and oropharyngeal swabs were collected from patients seeking health care, incoming travelers as well as from outgoing travelers undergoing pre-travel COVID-19 testing (required for flight boarding). Sample collection, and testing were coordinated by the National Public Health Laboratory.</div></div><div><h3>Results</h3><div>Among 515 samples, 260 (50.49 %) were from outgoing travelers, 227 (44.08 %) Covid-19 suspects seeking care, and 28 (5.44 %) incoming travelers identified at the airport. The majority of the samples came from Dar es Salaam (<em>n</em> = 380, 73.7 %), the country's largest city and the main port of entry. We identified 74 Pango lineages from all the samples, with Omicron 430 (83.50 %) and Delta 79 (15 %) variants being predominant. From the 380 Dar es Salaam samples, 67 Pango lineages were identified, showing both overlapping and unique lineages in each sample type.</div></div><div><h3>Conclusion</h3><div>Our findings reveal a dynamic circulation of SARS-CoV-2 variants over time, with Delta predominantly observed in 2021 and Omicron in 2022 in Tanzania. The temporal prevalence of the identified lineages was consistent with the global epidemiology of the virus. Sustained and expanded genomic surveillance is recommended to track and respond effectively to emerging variants.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 2","pages":"Article 100212"},"PeriodicalIF":1.6,"publicationDate":"2025-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143864808","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hepatitis B and C infection in tuberculosis patients in the Hauts Bassins region of Burkina Faso, West Africa 西非布基纳法索上盆地地区肺结核患者的乙型和丙型肝炎感染
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-04-14 DOI: 10.1016/j.jcvp.2025.100211
Armel Moumouni Sanou , Abdoulaye Dera , Jeoffray Diendere , Nina Mathuola Geneviève Ouattara , Eric Kyelem , Arhouna Siguina Traore , Arouna Dao , Arielle Sandra Bettina Badiel , Ina Marie Angèle Traore , Michel Kiréopori.B Gomgnimbou , Isidore Bonkoungou , Gautier Henri Ouedraogo
Tuberculosis (TB) and viral hepatitis B and C represent significant public health concerns. Co-infection with TB and hepatitis B and/or C results in significant complications, including suboptimal treatment outcomes in TB and the development of hepatitis induced by anti-TB drugs. At present, no data on these co-infections are available for Burkina Faso. This study investigates the epidemiology of these co-infections in TB patients in the Hauts-Bassins region of Burkina Faso. A cross-sectional analytical study was conducted in health facilities involved in the management of TB in the Hauts-Bassins region of Burkina Faso from October 2023 to June 2024. For each consenting TB patient, data were collected. A blood sample was obtained and analyzed for a range of infection markers (HBsAg, HBV DNA, anti-HCV antibodies, and HCV RNA) and liver enzymes (ALT and γ-GT). A total of 259 TB patients were included in the study. The mean age of the participants was 39.7 ± 15.9 years. The overall prevalence of HBsAg was 10.03 % and 3.8 % for anti-HCV. Among the HBsAg-positive samples, HBV DNA was detected in all cases, with 68.2 % exhibiting a viral load exceeding 20,000 IU/mL. Elevated ALT was observed in 19.2 % of TB/HBsAg patients and in 30.0 % of TB/anti-HCV. About γ-GT, an elavated result was observed in 46.1 % of TB/HBsAg patients and 40.0 % of TB/anti-HCV patients. The results demonstrated a high prevalence of hepatitis B and intermediate exposure to HCV in TB patients. It is thus recommended that routine screening for these diseases be considered in TB patients.
结核病(TB)和病毒性乙型和丙型肝炎是重大的公共卫生问题。结核病与乙型和/或丙型肝炎合并感染会导致严重并发症,包括结核病治疗效果欠佳和抗结核药物诱发肝炎。目前,布基纳法索没有关于这些合并感染的数据。本研究调查了布基纳法索上盆地地区结核病患者中这些合并感染的流行病学。从2023年10月至2024年6月,在布基纳法索上盆地地区参与结核病管理的卫生设施中进行了一项横断面分析研究。对每个同意结核病的患者收集数据。采集血样并分析一系列感染标志物(HBsAg、HBV DNA、抗HCV抗体和HCV RNA)和肝酶(ALT和γ-GT)。该研究共纳入了259名结核病患者。参与者平均年龄为39.7±15.9岁。总体HBsAg患病率为10.03%,抗hcv患病率为3.8%。在hbsag阳性样本中,所有病例均检测到HBV DNA,其中68.2%的病毒载量超过20,000 IU/mL。在19.2%的TB/HBsAg患者和30.0%的TB/anti-HCV患者中观察到ALT升高。关于γ-GT, 46.1%的TB/HBsAg患者和40.0%的TB/anti-HCV患者的γ-GT升高。结果表明,在结核病患者中,乙型肝炎患病率高,丙型肝炎暴露程度中等。因此,建议在结核病患者中考虑对这些疾病进行常规筛查。
{"title":"Hepatitis B and C infection in tuberculosis patients in the Hauts Bassins region of Burkina Faso, West Africa","authors":"Armel Moumouni Sanou ,&nbsp;Abdoulaye Dera ,&nbsp;Jeoffray Diendere ,&nbsp;Nina Mathuola Geneviève Ouattara ,&nbsp;Eric Kyelem ,&nbsp;Arhouna Siguina Traore ,&nbsp;Arouna Dao ,&nbsp;Arielle Sandra Bettina Badiel ,&nbsp;Ina Marie Angèle Traore ,&nbsp;Michel Kiréopori.B Gomgnimbou ,&nbsp;Isidore Bonkoungou ,&nbsp;Gautier Henri Ouedraogo","doi":"10.1016/j.jcvp.2025.100211","DOIUrl":"10.1016/j.jcvp.2025.100211","url":null,"abstract":"<div><div>Tuberculosis (TB) and viral hepatitis B and C represent significant public health concerns. Co-infection with TB and hepatitis B and/or C results in significant complications, including suboptimal treatment outcomes in TB and the development of hepatitis induced by anti-TB drugs. At present, no data on these co-infections are available for Burkina Faso. This study investigates the epidemiology of these co-infections in TB patients in the Hauts-Bassins region of Burkina Faso. A cross-sectional analytical study was conducted in health facilities involved in the management of TB in the Hauts-Bassins region of Burkina Faso from October 2023 to June 2024. For each consenting TB patient, data were collected. A blood sample was obtained and analyzed for a range of infection markers (HBsAg, HBV DNA, anti-HCV antibodies, and HCV RNA) and liver enzymes (ALT and γ-GT). A total of 259 TB patients were included in the study. The mean age of the participants was 39.7 ± 15.9 years. The overall prevalence of HBsAg was 10.03 % and 3.8 % for anti-HCV. Among the HBsAg-positive samples, HBV DNA was detected in all cases, with 68.2 % exhibiting a viral load exceeding 20,000 IU/mL. Elevated ALT was observed in 19.2 % of TB/HBsAg patients and in 30.0 % of TB/anti-HCV. About γ-GT, an elavated result was observed in 46.1 % of TB/HBsAg patients and 40.0 % of TB/anti-HCV patients. The results demonstrated a high prevalence of hepatitis B and intermediate exposure to HCV in TB patients. It is thus recommended that routine screening for these diseases be considered in TB patients.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 2","pages":"Article 100211"},"PeriodicalIF":1.6,"publicationDate":"2025-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143848190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Elevated levels of platelet-activating factor and syndecan-1 in severe dengue infections 重度登革热感染中血小板活化因子和syndecan-1水平升高
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-04-14 DOI: 10.1016/j.jcvp.2025.100213
Sri Masyeni , I Made Wisnu Wardhana , Pande Ayu Nayakasih Permatananda , Arya Giri Prebawa , Saraswati Laksmi Dewi , Erni Juwita Nelwan

Background

Severe dengue is a serious infection associated with cytokine storms.
Objectives: This study investigated the roles of platelet-activating factor (PAF), syndecan-1, and matrix metalloprotein-9 (MMP-9) in dengue severity.

Study design

Blood samples were collected to confirm the diagnosis of dengue infection, and to assess disease severity. Tests performed included non-structural protein 1 dengue test, immunoglobulin G/immunoglobulin M dengue tests, real-time polymerase chain reaction, enzyme-linked immunosorbent assay, and a complete blood count. Patients with dengue infection were classified as having dengue fever or dengue hemorrhagic fever.

Results

The median levels of PAF, syndecan-1, and MMP-9 in all patients were 73.27 (14.2–769.1) pg/mL, 5.4 (2–64.3) pg/mL, and 197.8 (95.3–962.8) pg/mL, respectively. The levels of all three biomarkers were significantly higher in the dengue hemorrhagic fever and secondary infection groups; with p values < 0.001. Multivariate analysis revealed that PAF and syndecan-1 levels significantly correlated with the severity of dengue infection. Syndecan-1 had the strongest correlation, with a correlation coefficient of 0.43, whereas PAF had a correlation coefficient of 0.30.

Conclusions

PAF and syndecan-1 were both independently associated with severe dengue; however, further longitudinal studies are required to validate their predictive potential.
背景:重症登革热是一种与细胞因子风暴相关的严重感染。目的:本研究探讨血小板活化因子(PAF)、syndecan-1和基质金属蛋白9 (MMP-9)在登革热严重程度中的作用。研究设计采集血液样本以确认登革热感染的诊断,并评估疾病严重程度。进行的检测包括非结构蛋白1登革热试验、免疫球蛋白G/免疫球蛋白M登革热试验、实时聚合酶链反应、酶联免疫吸附试验和全血细胞计数。登革热感染患者分为登革热或登革出血热。结果所有患者PAF、syndecan-1和MMP-9的中位水平分别为73.27 (14.2-769.1)pg/mL、5.4 (2-64.3)pg/mL和197.8 (95.3-962.8)pg/mL。在登革出血热和继发感染组中,这三种生物标志物的水平均显著较高;p值<;0.001. 多因素分析显示,PAF和syndecan-1水平与登革热感染严重程度显著相关。Syndecan-1的相关性最强,相关系数为0.43,PAF的相关系数为0.30。结论spaf和syndecan-1均与重症登革热独立相关;然而,需要进一步的纵向研究来验证其预测潜力。
{"title":"Elevated levels of platelet-activating factor and syndecan-1 in severe dengue infections","authors":"Sri Masyeni ,&nbsp;I Made Wisnu Wardhana ,&nbsp;Pande Ayu Nayakasih Permatananda ,&nbsp;Arya Giri Prebawa ,&nbsp;Saraswati Laksmi Dewi ,&nbsp;Erni Juwita Nelwan","doi":"10.1016/j.jcvp.2025.100213","DOIUrl":"10.1016/j.jcvp.2025.100213","url":null,"abstract":"<div><h3>Background</h3><div>Severe dengue is a serious infection associated with cytokine storms.</div><div>Objectives: This study investigated the roles of platelet-activating factor (PAF), syndecan-1, and matrix metalloprotein-9 (MMP-9) in dengue severity.</div></div><div><h3>Study design</h3><div>Blood samples were collected to confirm the diagnosis of dengue infection, and to assess disease severity. Tests performed included non-structural protein 1 dengue test, immunoglobulin G/immunoglobulin M dengue tests, real-time polymerase chain reaction, enzyme-linked immunosorbent assay, and a complete blood count. Patients with dengue infection were classified as having dengue fever or dengue hemorrhagic fever.</div></div><div><h3>Results</h3><div>The median levels of PAF, syndecan-1, and MMP-9 in all patients were 73.27 (14.2–769.1) pg/mL, 5.4 (2–64.3) pg/mL, and 197.8 (95.3–962.8) pg/mL, respectively. The levels of all three biomarkers were significantly higher in the dengue hemorrhagic fever and secondary infection groups; with <em>p</em> values &lt; 0.001. Multivariate analysis revealed that PAF and syndecan-1 levels significantly correlated with the severity of dengue infection. Syndecan-1 had the strongest correlation, with a correlation coefficient of 0.43, whereas PAF had a correlation coefficient of 0.30.</div></div><div><h3>Conclusions</h3><div>PAF and syndecan-1 were both independently associated with severe dengue; however, further longitudinal studies are required to validate their predictive potential.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 2","pages":"Article 100213"},"PeriodicalIF":1.6,"publicationDate":"2025-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143834557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Monitoring humoral immune response following COVID-19 immunization and booster dose: A prospective study in tunisian healthcare workers 监测COVID-19免疫接种和加强剂量后的体液免疫反应:突尼斯卫生保健工作者的前瞻性研究
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-04-08 DOI: 10.1016/j.jcvp.2025.100210
Chiraz Naffouti , Hela Hannachi , Wafa Aissi , Ikram Ayari , Fatma Ben Salem , Manel Hamdoun , Olfa Bahri

Background

As SARS-CoV-2 vaccines are deployed worldwide, assessing the kinetics and magnitude of anti-SARS-CoV-2 antibodies post-vaccination at various time points is crucial to optimize immunization strategies. This study aims to evaluate the humoral response in healthcare workers (HCWs) after primary vaccination and booster doses both in the short and long term and to examine the effect of preexisting immunity, age, sex, and vaccine type on this response.

Methods

Prior to the primary vaccination, an initial serology was performed to determine the immunity to SARS-CoV-2. Based on the outcomes of this serology or the rapid diagnostic tests, participants were split into two groups: COVID-19-free and COVID-19-recovered people. In each group, serological tests were conducted one and six months following the first vaccination(M1,M6).The vaccines administrated were mRNA, viral vector and inactivated viral vaccines. The follow-up was done one and six months after the booster dose (mRNA vaccine) (M1B,M6B). Anti-SARS-CoV-2 anti-S IgG were evaluated using the Access SARS-CoV-2 IgGII® test (BECKMAN COULTER).

Results

A total of 319 HCWs were sampled. For COVID-19-recovered people, the median anti-S level was significantly higher at 130AU/mL(IQR 51.5–184) compared to 89AU/mL(IQR 34.1–145.4),p = 0.0042. At every stage, there was a statistically significant increase in anti-S levels in adenovirus or inactivated vaccinations. Participants who received mRNA vaccines had significantly the highest anti-S levels at M1, M6, and M6B, according to post-hoc analysis. The anti-S level increased significantly one month after the third dose, from 12.7AU/mL(IQR 6.4–28.4) to 140.6AU/mL(IQR 88.6–258.5),p < 0.001. Six months after the booster dose, the anti-S titer dropped but remained positive at 40.8AU/mL(IQR22.5–91.3). In every time period, there was no correlation or association between anti-S level and age or sex.

Conclusion

The administration of mRNA vaccines allows to an enhanced humoral response in individuals recovering from COVID-19. Six months following the initial immunization, one dose has the same immunogenicity as two doses. However, a third dose of the mRNA vaccine should be given to lengthen the duration of the humoral in both COVID-19-free and COVID-19-recovered people. Booster doses should be administrated to high risk group who can transmit the disease to susceptible patient.
随着SARS-CoV-2疫苗在全球范围内的应用,评估接种后不同时间点抗SARS-CoV-2抗体的动力学和强度对于优化免疫策略至关重要。本研究旨在评估卫生保健工作者(HCWs)在初次接种和短期和长期加强剂量后的体液反应,并检查先前存在的免疫力、年龄、性别和疫苗类型对这种反应的影响。方法在初次接种前进行初步血清学检测,以确定对SARS-CoV-2的免疫。根据该血清学或快速诊断测试的结果,参与者被分为两组:未感染covid -19的人和已康复的人。在每组中,在第一次接种后1个月和6个月进行血清学检测(M1,M6)。接种的疫苗有mRNA疫苗、病毒载体疫苗和灭活疫苗。在加强剂量(mRNA疫苗)(M1B,M6B)后1个月和6个月进行随访。采用Access SARS-CoV-2 IgGII®检测试剂盒(BECKMAN COULTER)检测抗SARS-CoV-2抗s IgG。结果共抽取319名卫生保健员。在covid -19康复者中,抗s水平中位数为130AU/mL(IQR 51.5-184)显著高于89AU/mL(IQR 34.1-145.4),p = 0.0042。在每个阶段,腺病毒或灭活疫苗的抗s水平都有统计学意义上的显著增加。根据事后分析,接种mRNA疫苗的参与者在M1、M6和M6B中具有最高的抗s水平。第三次给药1个月后,抗s水平由12.7AU/mL(IQR 6.4-28.4)显著升高至140.6AU/mL(IQR 88.6-258.5),p <;0.001. 增强剂量6个月后,抗s滴度下降,但仍呈阳性,为40.8AU/mL(IQR22.5-91.3)。在各个时间段,anti-S水平与年龄、性别之间没有相关性或相关性。结论mRNA疫苗可增强COVID-19恢复期个体的体液应答。初次免疫后6个月,一剂与两剂具有相同的免疫原性。但是,对于未感染covid -19的人和已康复的人,应该接种第三剂mRNA疫苗以延长体液持续时间。高危人群应给予加强剂量,他们可将疾病传播给易感患者。
{"title":"Monitoring humoral immune response following COVID-19 immunization and booster dose: A prospective study in tunisian healthcare workers","authors":"Chiraz Naffouti ,&nbsp;Hela Hannachi ,&nbsp;Wafa Aissi ,&nbsp;Ikram Ayari ,&nbsp;Fatma Ben Salem ,&nbsp;Manel Hamdoun ,&nbsp;Olfa Bahri","doi":"10.1016/j.jcvp.2025.100210","DOIUrl":"10.1016/j.jcvp.2025.100210","url":null,"abstract":"<div><h3>Background</h3><div>As SARS-CoV-2 vaccines are deployed worldwide, assessing the kinetics and magnitude of anti-SARS-CoV-2 antibodies post-vaccination at various time points is crucial to optimize immunization strategies. This study aims to evaluate the humoral response in healthcare workers (HCWs) after primary vaccination and booster doses both in the short and long term and to examine the effect of preexisting immunity, age, sex, and vaccine type on this response.</div></div><div><h3>Methods</h3><div>Prior to the primary vaccination, an initial serology was performed to determine the immunity to SARS-CoV-2. Based on the outcomes of this serology or the rapid diagnostic tests, participants were split into two groups: COVID-19-free and COVID-19-recovered people. In each group, serological tests were conducted one and six months following the first vaccination(M1,M6).The vaccines administrated were mRNA, viral vector and inactivated viral vaccines. The follow-up was done one and six months after the booster dose (mRNA vaccine) (M1B,M6B). Anti-SARS-CoV-2 anti-S IgG were evaluated using the Access SARS-CoV-2 IgGII® test (BECKMAN COULTER).</div></div><div><h3>Results</h3><div>A total of 319 HCWs were sampled. For COVID-19-recovered people, the median anti-S level was significantly higher at 130AU/mL(IQR 51.5–184) compared to 89AU/mL(IQR 34.1–145.4),<strong><em>p</em></strong> <strong>=</strong> <strong>0.0042.</strong> At every stage, there was a statistically significant increase in anti-S levels in adenovirus or inactivated vaccinations. Participants who received mRNA vaccines had significantly the highest anti-S levels at M1, M6, and M6B, according to post-hoc analysis. The anti-S level increased significantly one month after the third dose, from 12.7AU/mL(IQR 6.4–28.4) to 140.6AU/mL(IQR 88.6–258.5),<strong><em>p</em></strong> <strong>&lt;</strong> <strong>0.001</strong>. Six months after the booster dose, the anti-S titer dropped but remained positive at 40.8AU/mL(IQR22.5–91.3). In every time period, there was no correlation or association between anti-S level and age or sex.</div></div><div><h3>Conclusion</h3><div>The administration of mRNA vaccines allows to an enhanced humoral response in individuals recovering from COVID-19. Six months following the initial immunization, one dose has the same immunogenicity as two doses. However, a third dose of the mRNA vaccine should be given to lengthen the duration of the humoral in both COVID-19-free and COVID-19-recovered people. Booster doses should be administrated to high risk group who can transmit the disease to susceptible patient.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 2","pages":"Article 100210"},"PeriodicalIF":1.6,"publicationDate":"2025-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143817528","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diagnosis of SARS-CoV-2: Experience with rapid immunochromatography tests and RT‒qPCR 诊断 SARS-CoV-2:快速免疫层析测试和 RT-qPCR 的经验
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-03-31 DOI: 10.1016/j.jcvp.2025.100207
David Alejandro Cabrera Gaytán , Porfirio Felipe Hernández Bautista , Clara Esperanza Santacruz Tinoco , Julio Elias Alvarado Yaah , Yu-Mei Anguiano Hernández , Bernardo Martínez Miguel , Alfonso Vallejos Parás , Lumumba Arriaga Nieto , Nancy Sandoval Gutiérrez , Concepción Grajales Muñiz , Alejandro Moctezuma Paz , Leticia Jaimes Betancourt

Background

Mexico has experienced six waves were experiences between 2019 and 2023 of coronavirus disease 2019 (COVID-19). In the first wave, diagnosis relied on RT‒qPCR; rapid tests for SARS‒CoV‒2 were introduced from the second wave onward. However, the patterns of results with this test in Mexico have not been documented in population-based studies.

Objective

To describe the temporal patterns of the results from RT-qPCR and rapid immunochromatography tests for SARS-CoV-2 detection from the second to the sixth epidemic wave in Mexico.

Materials and methods

This was a multicenter study at the national level. The operational definition of suspected cases of viral respiratory illness, confirmed cases of SARS-CoV-2 in Mexico, and data for asymptomatic individuals who required rapid testing between 2020 and 2023 were employed; testing was employed for the entirety of the four years. Positivity was estimated per epidemiological week, state, and condition for both tests. Spearman's correlation coefficient, trend chi-square analysis, and odds ratios with 95 % confidence intervals were used.

Results

A total of 1749,765 cases had RT‒qPCR data recorded from 2020 to 2023, and 8356,903 cases with rapid tests were conducted for virus identification. Compared with the rest of the country, the southeastern region exhibited different patterns. The positivity rate of rapid tests from the epidemiological surveillance system was lower than that of RT‒qPCR during interepidemics periods, whereas the positivity rate of rapid tests for symptomatic individuals was higher than that of RT‒qPCR tests over two years.

Conclusion

Rapid tests for SARS-CoV-2 identification in Mexico were affordable and timely at the local level. These tests revealed differing epidemic wave patterns in the southeastern region of the country.
墨西哥在2019年至2023年期间经历了六波2019冠状病毒病(COVID-19)。在第一波中,诊断依靠RT-qPCR;从第二波开始引入了SARS-CoV-2的快速检测。然而,在以人口为基础的研究中尚未记录墨西哥使用该测试的结果模式。目的分析墨西哥第二至第六波SARS-CoV-2流行的RT-qPCR和快速免疫层析检测结果的时间分布规律。材料与方法本研究为国家级多中心研究。采用了病毒性呼吸道疾病疑似病例、墨西哥SARS-CoV-2确诊病例的操作定义,以及2020年至2023年间需要快速检测的无症状个体数据;整个四年都在进行测试。根据流行病学周、州和条件估计两项检测的阳性。采用Spearman相关系数、趋势卡方分析和95%置信区间的优势比。结果2020 - 2023年共记录RT-qPCR数据1749765例,进行病毒快速鉴定8356903例。与全国其他地区相比,东南部地区表现出不同的格局。流行病学监测系统快速检测在流行间期的阳性率低于RT-qPCR,而2年以上有症状个体快速检测的阳性率高于RT-qPCR。结论墨西哥的SARS-CoV-2快速检测在地方层面上是负担得起且及时的。这些检测揭示了该国东南部地区不同的流行波模式。
{"title":"Diagnosis of SARS-CoV-2: Experience with rapid immunochromatography tests and RT‒qPCR","authors":"David Alejandro Cabrera Gaytán ,&nbsp;Porfirio Felipe Hernández Bautista ,&nbsp;Clara Esperanza Santacruz Tinoco ,&nbsp;Julio Elias Alvarado Yaah ,&nbsp;Yu-Mei Anguiano Hernández ,&nbsp;Bernardo Martínez Miguel ,&nbsp;Alfonso Vallejos Parás ,&nbsp;Lumumba Arriaga Nieto ,&nbsp;Nancy Sandoval Gutiérrez ,&nbsp;Concepción Grajales Muñiz ,&nbsp;Alejandro Moctezuma Paz ,&nbsp;Leticia Jaimes Betancourt","doi":"10.1016/j.jcvp.2025.100207","DOIUrl":"10.1016/j.jcvp.2025.100207","url":null,"abstract":"<div><h3>Background</h3><div>Mexico has experienced six waves were experiences between 2019 and 2023 of coronavirus disease 2019 (COVID-19). In the first wave, diagnosis relied on RT‒qPCR; rapid tests for SARS‒CoV‒2 were introduced from the second wave onward. However, the patterns of results with this test in Mexico have not been documented in population-based studies.</div></div><div><h3>Objective</h3><div>To describe the temporal patterns of the results from RT-qPCR and rapid immunochromatography tests for SARS-CoV-2 detection from the second to the sixth epidemic wave in Mexico.</div></div><div><h3>Materials and methods</h3><div>This was a multicenter study at the national level. The operational definition of suspected cases of viral respiratory illness, confirmed cases of SARS-CoV-2 in Mexico, and data for asymptomatic individuals who required rapid testing between 2020 and 2023 were employed; testing was employed for the entirety of the four years. Positivity was estimated per epidemiological week, state, and condition for both tests. Spearman's correlation coefficient, trend chi-square analysis, and odds ratios with 95 % confidence intervals were used.</div></div><div><h3>Results</h3><div>A total of 1749,765 cases had RT‒qPCR data recorded from 2020 to 2023, and 8356,903 cases with rapid tests were conducted for virus identification. Compared with the rest of the country, the southeastern region exhibited different patterns. The positivity rate of rapid tests from the epidemiological surveillance system was lower than that of RT‒qPCR during interepidemics periods, whereas the positivity rate of rapid tests for symptomatic individuals was higher than that of RT‒qPCR tests over two years.</div></div><div><h3>Conclusion</h3><div>Rapid tests for SARS-CoV-2 identification in Mexico were affordable and timely at the local level. These tests revealed differing epidemic wave patterns in the southeastern region of the country.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 2","pages":"Article 100207"},"PeriodicalIF":1.6,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143785855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Persistent nucleic acids from endemic human coronaviruses in adenoids: Do they enhance children's immune response to SARS-CoV-2 infection? 腺样体中地方性人类冠状病毒的持久性核酸:它们是否增强了儿童对SARS-CoV-2感染的免疫反应?
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-03-25 DOI: 10.1016/j.jcvp.2025.100208
Kira Winkler , Lucia Otten , Alina Abramian , Eva Weber , Florian Winkler , Niklas Klümper , Anna Maria Schmidt , Zahrasadat Safavieh , Anna Maria Eis-Hübinger , Stephan Herberhold

Introduction

Human Coronaviruses (HCoVs), including HCoV-OC43, HCoV-HKU1, HCoV-NL63, and HCoV-229E, are endemic viruses that circulate globally and infect humans. In contrast to SARS-CoV-2, which causes more severe symptoms, these endemic HCoVs typically induce mild cold symptoms and confer only temporary immunity [1,2]]. Understanding the presence and persistence of HCoVs in the human population, particularly in asymptomatic individuals, is crucial for understanding their potential role in immunity and viral dynamics.

Methods

This study aimed to investigate the presence of nucleic acids of endemic HCoVs (HCoV-OC43, HCoV-HKU1, HCoV-NL63, and HCoV-229E) in individuals without symptoms of acute respiratory infection. A total of 78 adenoid tissue samples were collected from children (up to 10 years old) without current symptoms of airway infection. The samples were analyzed using RT-nested PCR to detect viral RNA.

Results

Of the 78 adenoid samples, 24 (30,8 %) tested positive for at least one type of endemic HCoV. Additionally, throat swabs were collected from 56 participants immediately before surgery. Endemic HCoV RNA was rarely detected in these throat swabs, with only 3 out of 56 samples testing positive.

Discussion

Our findings suggest the frequent presence of endemic HCoV nucleic acids in the lymphatic tissue of Waldeyer's ring, especially in children. This observation supports the concept of these viruses acting as immune triggers. The persistence of viral remnants in the adenoid tissue may contribute to continuous immune surveillance, which could have implications for immunity to future infections and for understanding viral dynamics in asymptomatic individuals.
人类冠状病毒(hcov),包括HCoV-OC43、HCoV-HKU1、HCoV-NL63和HCoV-229E,是全球传播并感染人类的地方性病毒。与引起更严重症状的SARS-CoV-2相比,这些地方性hcov通常会引起轻微的感冒症状,并仅赋予暂时的免疫力[1,2]]。了解hcov在人群中的存在和持续存在,特别是在无症状个体中,对于了解其在免疫和病毒动力学中的潜在作用至关重要。方法本研究旨在调查无急性呼吸道感染症状个体中地方性hcov (HCoV-OC43、HCoV-HKU1、HCoV-NL63和HCoV-229E)的核酸存在情况。从目前没有呼吸道感染症状的儿童(10岁以下)共收集了78个腺样体组织样本。采用rt -巢式PCR检测病毒RNA。结果78例腺样体标本中,24例(30.8%)至少检出一种地方性HCoV阳性。此外,在手术前立即收集了56名参与者的咽拭子。在这些咽拭子中很少检测到地方性HCoV RNA, 56个样本中只有3个检测呈阳性。我们的研究结果表明,在瓦尔德耶氏环的淋巴组织中经常存在地方性HCoV核酸,特别是在儿童中。这一观察结果支持了这些病毒作为免疫触发器的概念。腺样体组织中病毒残留物的持续存在可能有助于持续的免疫监视,这可能对未来感染的免疫和了解无症状个体的病毒动力学具有重要意义。
{"title":"Persistent nucleic acids from endemic human coronaviruses in adenoids: Do they enhance children's immune response to SARS-CoV-2 infection?","authors":"Kira Winkler ,&nbsp;Lucia Otten ,&nbsp;Alina Abramian ,&nbsp;Eva Weber ,&nbsp;Florian Winkler ,&nbsp;Niklas Klümper ,&nbsp;Anna Maria Schmidt ,&nbsp;Zahrasadat Safavieh ,&nbsp;Anna Maria Eis-Hübinger ,&nbsp;Stephan Herberhold","doi":"10.1016/j.jcvp.2025.100208","DOIUrl":"10.1016/j.jcvp.2025.100208","url":null,"abstract":"<div><h3>Introduction</h3><div>Human Coronaviruses (HCoVs), including HCoV-OC43, HCoV-HKU1, HCoV-NL63, and HCoV-229E, are endemic viruses that circulate globally and infect humans. In contrast to SARS-CoV-2, which causes more severe symptoms, these endemic HCoVs typically induce mild cold symptoms and confer only temporary immunity [<span><span>1</span></span>,<span><span>2</span></span>]]. Understanding the presence and persistence of HCoVs in the human population, particularly in asymptomatic individuals, is crucial for understanding their potential role in immunity and viral dynamics.</div></div><div><h3>Methods</h3><div>This study aimed to investigate the presence of nucleic acids of endemic HCoVs (HCoV-OC43, HCoV-HKU1, HCoV-NL63, and HCoV-229E) in individuals without symptoms of acute respiratory infection. A total of 78 adenoid tissue samples were collected from children (up to 10 years old) without current symptoms of airway infection. The samples were analyzed using RT-nested PCR to detect viral RNA.</div></div><div><h3>Results</h3><div>Of the 78 adenoid samples, 24 (30,8 %) tested positive for at least one type of endemic HCoV. Additionally, throat swabs were collected from 56 participants immediately before surgery. Endemic HCoV RNA was rarely detected in these throat swabs, with only 3 out of 56 samples testing positive.</div></div><div><h3>Discussion</h3><div>Our findings suggest the frequent presence of endemic HCoV nucleic acids in the lymphatic tissue of Waldeyer's ring, especially in children. This observation supports the concept of these viruses acting as immune triggers. The persistence of viral remnants in the adenoid tissue may contribute to continuous immune surveillance, which could have implications for immunity to future infections and for understanding viral dynamics in asymptomatic individuals.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 2","pages":"Article 100208"},"PeriodicalIF":1.6,"publicationDate":"2025-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143724847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Urgent attention for health care services preparedness to address rising human metapneumovirus (HMPV) cases 紧急关注卫生保健服务准备,以应对不断上升的人偏肺病毒(HMPV)病例
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-03-24 DOI: 10.1016/j.jcvp.2025.100209
Md. Salman Sohel , Safayet Jamil , Md. Naimur Rahman
{"title":"Urgent attention for health care services preparedness to address rising human metapneumovirus (HMPV) cases","authors":"Md. Salman Sohel ,&nbsp;Safayet Jamil ,&nbsp;Md. Naimur Rahman","doi":"10.1016/j.jcvp.2025.100209","DOIUrl":"10.1016/j.jcvp.2025.100209","url":null,"abstract":"","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 2","pages":"Article 100209"},"PeriodicalIF":1.6,"publicationDate":"2025-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143739010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The frequency of post-COVID-19 condition and its clinical relevance after COVID-19 disease of employees in facilities of preschool childcare 学龄前托幼机构工作人员新冠肺炎后发病频次及其临床相关性
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jcvp.2024.100201
Michelle Nina Braun , Anna Wolfschmidt , Andrea Kaifie , Ruediger Stephan Goertz

Objective

Evaluation of the rate and symptoms of Post-COVID-19 condition in employees in childcare.

Methods

A structured questionnaire collected data from two distinct collectives: Collective 1 (C1) consisted of a prospective cohort of 44 employees after COVID-19 disease, whereas Collective 2 (C2) included 222 employees who were retrospectively interviewed. The questionnaire mainly focused on symptoms and wellbeing during or after COVID-19.

Results

The main symptoms of Post-COVID-19 condition were impairment of focus, fatigue/exhaustion, reduced stamina, headache and dyspnoea. 30 % of the employees in C1 and 7.6 % of C2 suffered from a clinically relevant Post-COVID-19 condition with impairment of the general wellbeing. According to the WHO definition, a Post-COVID-19 condition was found in 56.6 % (C1) and 25.5 % (C2).

Conclusions

A Post-COVID-19 condition was a common finding in both our collectives but did not automatically cause an impairment of general wellbeing.
目的了解托儿人员新型冠状病毒感染后症状及发生率。方法采用结构化问卷收集来自两个不同群体的数据:集体1 (C1)包括44名COVID-19疾病后的员工,而集体2 (C2)包括222名回顾性访谈的员工。问卷主要关注COVID-19期间或之后的症状和健康状况。结果新冠肺炎后患者的主要症状为注意力障碍、疲劳/乏力、耐力下降、头痛和呼吸困难。C1区30%的员工和C2区7.6%的员工患有临床相关的后冠状病毒病,总体健康受损。根据世卫组织的定义,56.6% (C1型)和25.5% (C2型)的患者存在后冠状病毒感染。结论新冠肺炎后症状在我们两个集体中都很常见,但不会自动导致总体幸福感受损。
{"title":"The frequency of post-COVID-19 condition and its clinical relevance after COVID-19 disease of employees in facilities of preschool childcare","authors":"Michelle Nina Braun ,&nbsp;Anna Wolfschmidt ,&nbsp;Andrea Kaifie ,&nbsp;Ruediger Stephan Goertz","doi":"10.1016/j.jcvp.2024.100201","DOIUrl":"10.1016/j.jcvp.2024.100201","url":null,"abstract":"<div><h3>Objective</h3><div>Evaluation of the rate and symptoms of Post-COVID-19 condition in employees in childcare.</div></div><div><h3>Methods</h3><div>A structured questionnaire collected data from two distinct collectives: Collective 1 (C1) consisted of a prospective cohort of 44 employees after COVID-19 disease, whereas Collective 2 (C2) included 222 employees who were retrospectively interviewed. The questionnaire mainly focused on symptoms and wellbeing during or after COVID-19.</div></div><div><h3>Results</h3><div>The main symptoms of Post-COVID-19 condition were impairment of focus, fatigue/exhaustion, reduced stamina, headache and dyspnoea. 30 % of the employees in C1 and 7.6 % of C2 suffered from a clinically relevant Post-COVID-19 condition with impairment of the general wellbeing. According to the WHO definition, a Post-COVID-19 condition was found in 56.6 % (C1) and 25.5 % (C2).</div></div><div><h3>Conclusions</h3><div>A Post-COVID-19 condition was a common finding in both our collectives but did not automatically cause an impairment of general wellbeing.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 1","pages":"Article 100201"},"PeriodicalIF":1.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143135905","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of a flow cytometry-based surrogate assay (FlowSA) for the detection of SARS-CoV-2 in clinical samples 基于流式细胞术的替代检测法(FlowSA)在临床样品中检测SARS-CoV-2的评价
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jcvp.2025.100204
Vinit Upasani , Marjolein Knoester , Daniele Pantano , Lili Gard , Jolanda M. Smit , Bernardina T.F. van der Gun , Adriana Tami , Izabela A. Rodenhuis-Zybert

Introduction

The current diagnostic methods for SARS-CoV-2 rely on quantitative RT-PCR. However, the presence of viral RNA in samples does not necessarily reflect the presence of an infectious virus. Therefore, the reliable detection of infectious SARS-CoV-2 in clinical samples is necessary to limit viral transmission.

Methods

We developed a flow cytometry-based surrogate assay (FlowSA), wherein the presence of infectious SARS-CoV-2 was detected using virus nucleocapsid-specific antibodies.

Results

We showed that FlowSA allows the detection of a wide range of viral titers of multiple SARS-CoV-2 variants. Furthermore, the assay was successfully used to detect infectious SARS-CoV-2 in nasopharyngeal swabs from SARS-CoV-2 positive individuals, including those with high Ct values. Notably, FlowSA identified the presence of infectious SARS-CoV-2 in biological specimens that scored negative for cytopathic effect (CPE) in cell culture and would otherwise be considered negative.

Conclusion

We propose that FlowSA can be adopted as an alternative to conventional CPE methods for viral diagnostics.
目前SARS-CoV-2的诊断方法主要依赖于定量RT-PCR。然而,样本中病毒RNA的存在并不一定反映感染性病毒的存在。因此,在临床样本中可靠地检测传染性SARS-CoV-2是限制病毒传播的必要条件。方法我们建立了一种基于流式细胞术的替代检测方法(FlowSA),其中使用病毒核衣壳特异性抗体检测传染性SARS-CoV-2的存在。结果FlowSA可以检测多种SARS-CoV-2变体的大范围病毒滴度。此外,该方法还成功地用于检测SARS-CoV-2阳性个体(包括Ct值高的个体)鼻咽拭子中的传染性SARS-CoV-2。值得注意的是,FlowSA在细胞培养中细胞病变效应(CPE)得分为阴性的生物标本中发现了传染性SARS-CoV-2的存在,否则将被视为阴性。结论FlowSA可作为传统CPE方法的替代方法用于病毒诊断。
{"title":"Evaluation of a flow cytometry-based surrogate assay (FlowSA) for the detection of SARS-CoV-2 in clinical samples","authors":"Vinit Upasani ,&nbsp;Marjolein Knoester ,&nbsp;Daniele Pantano ,&nbsp;Lili Gard ,&nbsp;Jolanda M. Smit ,&nbsp;Bernardina T.F. van der Gun ,&nbsp;Adriana Tami ,&nbsp;Izabela A. Rodenhuis-Zybert","doi":"10.1016/j.jcvp.2025.100204","DOIUrl":"10.1016/j.jcvp.2025.100204","url":null,"abstract":"<div><h3>Introduction</h3><div>The current diagnostic methods for SARS-CoV-2 rely on quantitative RT-PCR. However, the presence of viral RNA in samples does not necessarily reflect the presence of an infectious virus. Therefore, the reliable detection of infectious SARS-CoV-2 in clinical samples is necessary to limit viral transmission.</div></div><div><h3>Methods</h3><div>We developed a flow cytometry-based surrogate assay (FlowSA), wherein the presence of infectious SARS-CoV-2 was detected using virus nucleocapsid-specific antibodies.</div></div><div><h3>Results</h3><div>We showed that FlowSA allows the detection of a wide range of viral titers of multiple SARS-CoV-2 variants. Furthermore, the assay was successfully used to detect infectious SARS-CoV-2 in nasopharyngeal swabs from SARS-CoV-2 positive individuals, including those with high Ct values. Notably, FlowSA identified the presence of infectious SARS-CoV-2 in biological specimens that scored negative for cytopathic effect (CPE) in cell culture and would otherwise be considered negative.</div></div><div><h3>Conclusion</h3><div>We propose that FlowSA can be adopted as an alternative to conventional CPE methods for viral diagnostics.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 1","pages":"Article 100204"},"PeriodicalIF":1.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143135907","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of daily alcohol consumption and age over 40 years on COVID-19 vaccination antibody titers in the Delta era among hospital workers in northern Okinawa, Japan: A retrospective cohort study 日本冲绳北部三角洲时期医院工作人员每日饮酒量和40岁以上年龄对COVID-19疫苗抗体滴度的影响:一项回顾性队列研究
IF 1.6 Q4 INFECTIOUS DISEASES Pub Date : 2025-02-01 DOI: 10.1016/j.jcvp.2025.100205
Takuji Kishimoto , Daisuke Tasato , Yoshitaka Nagasawa , Akihiro Yamashiro , Hayashi Shokita

Background

Coronavirus disease 2019 (COVID-19) vaccination has demonstrated efficacy in preventing infection, mitigating disease severity, and lowering the incidence of Long COVID. To enhance vaccine effectiveness, it is not only important to develop more effective vaccines but also to clarify factors, including lifestyle, that affect the immune response. The aim of this study was to investigate the impact of lifestyle factors on COVID-19 vaccination antibody titers.

Methods

Antibody titers of 354 hospital workers who received two COVID-19 vaccination doses were measured five times for more than six months. Information on medical history, demographic characteristics, and lifestyle-related items was obtained from hospital health checkups. The outcome variable (Lower-25 %) was defined as the antibody titer value below the 25th percentile of the fifth measurement. The Cox proportional hazard survival model was used to evaluate the hazard ratio for incidence of Lower-25 % according to lifestyle-related items.

Results

The crude incidence rates per 1,000 person-days for Lower-25 % among women and men were 1.35 and 1.66, respectively. The hazard ratios for Lower-25 % of those in their 40 s, 50 s, and 60 s compared with those in their 20 s were 5.82 (95 % confidence interval [CI], 2.05–16.51), 7.12 (95 % CI, 2.46–20.63), and 9.96 (95 % CI, 3.07–32.34), respectively. The hazard ratios for “daily” versus “never” drinking habits were 2.26 (95 % CI 1.17–4.34).

Conclusions

The results of this study indicate that shortening vaccination intervals for individuals over 40 years and discontinuing daily alcohol consumption are associated with the preservation of acquired antibody titers for optimizing vaccine efficacy.
背景2019冠状病毒病(COVID-19)疫苗接种已被证明在预防感染、减轻疾病严重程度和降低长COVID发病率方面具有疗效。为了提高疫苗的有效性,不仅要开发更有效的疫苗,而且要弄清影响免疫反应的因素,包括生活方式。本研究的目的是探讨生活方式因素对COVID-19疫苗抗体滴度的影响。方法对354名接受2剂新冠肺炎疫苗接种的医护人员进行5次抗体滴度检测,持续6个月以上。从医院健康检查中获得了病史、人口统计学特征和生活方式相关项目的信息。结果变量(低- 25%)定义为抗体滴度值低于第五次测定的第25百分位数。根据生活方式相关项目,采用Cox比例风险生存模型评估低- 25%发生率的风险比。结果低25%人群中,女性和男性的粗发病率分别为1.35和1.66。40多岁、50多岁和60多岁的低25%患者与20多岁患者的风险比分别为5.82(95%可信区间[CI], 2.05 ~ 16.51)、7.12 (95% CI, 2.46 ~ 20.63)和9.96 (95% CI, 3.07 ~ 32.34)。“每日”饮酒习惯与“从不”饮酒习惯的风险比为2.26 (95% CI 1.17-4.34)。结论缩短40岁以上人群的疫苗接种间隔和停止每日饮酒与保存获得性抗体滴度有关,从而优化疫苗效力。
{"title":"Effect of daily alcohol consumption and age over 40 years on COVID-19 vaccination antibody titers in the Delta era among hospital workers in northern Okinawa, Japan: A retrospective cohort study","authors":"Takuji Kishimoto ,&nbsp;Daisuke Tasato ,&nbsp;Yoshitaka Nagasawa ,&nbsp;Akihiro Yamashiro ,&nbsp;Hayashi Shokita","doi":"10.1016/j.jcvp.2025.100205","DOIUrl":"10.1016/j.jcvp.2025.100205","url":null,"abstract":"<div><h3>Background</h3><div>Coronavirus disease 2019 (COVID-19) vaccination has demonstrated efficacy in preventing infection, mitigating disease severity, and lowering the incidence of Long COVID. To enhance vaccine effectiveness, it is not only important to develop more effective vaccines but also to clarify factors, including lifestyle, that affect the immune response. The aim of this study was to investigate the impact of lifestyle factors on COVID-19 vaccination antibody titers.</div></div><div><h3>Methods</h3><div>Antibody titers of 354 hospital workers who received two COVID-19 vaccination doses were measured five times for more than six months. Information on medical history, demographic characteristics, and lifestyle-related items was obtained from hospital health checkups. The outcome variable (Lower-25 %) was defined as the antibody titer value below the 25th percentile of the fifth measurement. The Cox proportional hazard survival model was used to evaluate the hazard ratio for incidence of Lower-25 % according to lifestyle-related items.</div></div><div><h3>Results</h3><div>The crude incidence rates per 1,000 person-days for Lower-25 % among women and men were 1.35 and 1.66, respectively. The hazard ratios for Lower-25 % of those in their 40 s, 50 s, and 60 s compared with those in their 20 s were 5.82 (95 % confidence interval [CI], 2.05–16.51), 7.12 (95 % CI, 2.46–20.63), and 9.96 (95 % CI, 3.07–32.34), respectively. The hazard ratios for “daily” versus “never” drinking habits were 2.26 (95 % CI 1.17–4.34).</div></div><div><h3>Conclusions</h3><div>The results of this study indicate that shortening vaccination intervals for individuals over 40 years and discontinuing daily alcohol consumption are associated with the preservation of acquired antibody titers for optimizing vaccine efficacy.</div></div>","PeriodicalId":73673,"journal":{"name":"Journal of clinical virology plus","volume":"5 1","pages":"Article 100205"},"PeriodicalIF":1.6,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143135904","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of clinical virology plus
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1