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Associations of behavioral problems with white matter circuits connecting to the frontal lobes in school-aged children born at term and preterm 学龄期足月儿和早产儿的行为问题与连接额叶的白质回路之间的关系
Q4 Neuroscience Pub Date : 2024-04-12 DOI: 10.1016/j.ynirp.2024.100201
Machiko Hosoki , Margarita Alethea Eidsness , Lisa Bruckert, Katherine E. Travis, Heidi M. Feldman

Introduction

This study investigated whether internalizing and externalizing behavioral problems in children were associated with fractional anisotropy of white matter tracts connecting other brain regions to the frontal lobes. We contrasted patterns of association between children born at term (FT) and very preterm (PT: gestational age at birth =< 32 weeks).

Methods

Parents completed the Child Behavior Checklist/6–18 questionnaire to quantify behavioral problems when their children were age 8 years (N = 36 FT and 37 PT). Diffusion magnetic resonance scans were collected at the same age and analyzed using probabilistic tractography. Multiple linear regressions investigated the strength of association between age-adjusted T-scores of internalizing and externalizing problems and mean fractional anisotropy (mean-FA) of right and left uncinate, arcuate, anterior thalamic radiations, and dorsal cingulate bundle, controlling for birth group and sex.

Results

Models predicting internalizing T-scores found significant group-by-tract interactions for left and right arcuate and right uncinate. Internalizing scores were negatively associated with mean-FA of left and right arcuate only in FT children (pleft AF = 0.01, pright AF = 0.01). Models predicting externalizing T-scores found significant group-by-tract interactions for the left arcuate and right uncinate. Externalizing scores were negatively associated with mean-FA of right uncinate in FT (pright UF = 0.01) and positively associated in PT children (pright UF preterm = 0.01). Other models were not significant.

Conclusions

In children with a full range of scores on behavioral problems from normal to significantly elevated, internalizing and externalizing behavioral problems were negatively associated with mean-FA of white matter tracts connecting to frontal lobes in FT children; externalizing behavioral problems were positively associated with mean-FA of the right uncinate in PT children. The different associations by birth group suggest that the neurobiology of behavioral problems differs in the two birth groups.

简介:本研究探讨了儿童的内化和外化行为问题是否与连接其他脑区和额叶的白质束的分数各向异性有关。我们对比了足月儿(FT)和极早产儿(PT:出生时胎龄=< 32周)之间的关联模式。方法 家长填写儿童行为检查表/6-18问卷,以量化孩子8岁时的行为问题(N = 36 FT和37 PT)。在同一年龄段收集了弥散磁共振扫描结果,并使用概率束学方法进行了分析。多重线性回归研究了年龄调整后的内化和外化问题T分值与左右钩状束、弓状束、丘脑前放射束和扣带回背束的平均分数各向异性(mean-FA)之间的关联强度,并对出生组别和性别进行了控制。只有 FT 儿童的内化得分与左右弓状体的平均-FA 负相关(pleft AF = 0.01,pright AF = 0.01)。预测外化 T 分值的模型发现,左侧弓状肌和右侧钩状肌具有显著的组间交互作用。FT儿童的外部化得分与右弓状肌的平均FA呈负相关(pright UF = 0.01),而PT儿童的外部化得分与右弓状肌的平均FA呈正相关(pright UF preterm = 0.01)。结论 在行为问题得分从正常到显著升高的各种儿童中,内化和外化行为问题与FT儿童连接额叶的白质束的平均FA呈负相关;外化行为问题与PT儿童右侧钩突的平均FA呈正相关。出生组别的不同关联表明,行为问题的神经生物学在两个出生组别中有所不同。
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引用次数: 0
Deficient sleep, altered hypothalamic functional connectivity, depression and anxiety in cigarette smokers 吸烟者睡眠不足、下丘脑功能连接改变、抑郁和焦虑
Q4 Neuroscience Pub Date : 2024-03-01 DOI: 10.1016/j.ynirp.2024.100200
Yu Chen , Shefali Chaudhary , Guangfei Li , Lisa M. Fucito , Jinbo Bi , Chiang-Shan R. Li

Background

Deficient sleep is implicated in nicotine dependence as well as depressive and anxiety disorders. The hypothalamus regulates the sleep-wake cycle and supports motivated behavior, and hypothalamic dysfunction may underpin comorbid nicotine dependence, depression and anxiety. We aimed to investigate whether and how the resting state functional connectivities (rsFCs) of the hypothalamus relate to cigarette smoking, deficient sleep, depression and anxiety.

Methods

We used the data of 64 smokers and 198 age- and sex-matched adults who never smoked, curated from the Human Connectome Project. Deficient sleep and psychiatric problems were each assessed with Pittsburgh Sleep Quality Index (PSQI) and Achenbach Adult Self-Report. We processed the imaging data with published routines and evaluated the results at a corrected threshold, all with age, sex, and the severity of alcohol use as covariates.

Results

Smokers vs. never smokers showed poorer sleep quality and greater severity of depression and anxiety. In smokers only, the total PSQI score, indicating more sleep deficits, was positively associated with hypothalamic rsFCs with the right inferior frontal/insula/superior temporal and postcentral (rPoCG) gyri. Stronger hypothalamus-rPoCG rsFCs were also associated with greater severity of depression and anxiety in smokers but not never smokers. Additionally, in smokers, the PSQI score completely mediated the relationships of hypothalamus-rPoCG rsFCs with depression and anxiety severity.

Conclusions

These findings associate hypothalamic circuit dysfunction to sleep deficiency and severity of depression and anxiety symptoms in adults who smoke. Future studies may investigate the roles of the hypothalamic circuit in motivated behaviors to better characterize the inter-related neural markers of smoking, deficient sleep, depression and anxiety.

背景睡眠不足与尼古丁依赖以及抑郁和焦虑症有关。下丘脑调节睡眠-觉醒周期并支持动机行为,下丘脑功能障碍可能是尼古丁依赖、抑郁和焦虑并发症的基础。我们旨在研究下丘脑的静息状态功能连通性(rsFCs)是否以及如何与吸烟、睡眠不足、抑郁和焦虑相关。睡眠不足和精神问题分别通过匹兹堡睡眠质量指数(PSQI)和Achenbach成人自我报告进行评估。结果吸烟者与从不吸烟者相比,睡眠质量更差,抑郁和焦虑程度更严重。仅在吸烟者中,PSQI 总分(表明更多睡眠障碍)与下丘脑右下额叶/半岛/上颞叶和后中央(rPoCG)回的 rsFCs 呈正相关。下丘脑-rPoCG rsFCs较强也与吸烟者抑郁和焦虑的严重程度有关,但与从不吸烟者无关。此外,在吸烟者中,PSQI 分数完全介导了下丘脑-rPoCG rsFCs 与抑郁和焦虑严重程度的关系。未来的研究可能会调查下丘脑回路在动机行为中的作用,以更好地描述吸烟、睡眠不足、抑郁和焦虑的相互关联的神经标记。
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引用次数: 0
Edema progression in proximity to traumatic microbleeds: Evolution of cytotoxic and vasogenic edema on serial MRI 创伤性微出血附近的水肿进展:连续 MRI 上细胞毒性水肿和血管源性水肿的演变
Q4 Neuroscience Pub Date : 2024-03-01 DOI: 10.1016/j.ynirp.2024.100199
Jacquie Lee , Emily Baniewicz , Nicole L. Peterkin , Danielle Greenman , Allison D. Griffin , Neekita Jikaria , L. Christine Turtzo , Marie Luby , Lawrence L. Latour

Introduction

Although cerebral edema is common following traumatic brain injury (TBI), its formation and progression are poorly understood. This is especially true for the mild TBI population, who rarely undergo magnetic resonance imaging (MRI) studies, which can pick up subtle structural details not visualized on computed tomography, in the first few days after injury. This study aimed to visually classify and quantitatively measure edema progression in relation to traumatic microbleeds (TMBs) in a cohort of primarily mild TBI patients up to 30 days after injury. Researchers hypothesized that hypointense lesions on Apparent Diffusion Coefficient (ADC) detected acutely after injury would evolve into hyperintense Fluid Attenuated Inversion Recover (FLAIR) lesions.

Methods

This study analyzed the progression of cerebral edema after acute injury using multimodal MRI to classify TMBs as potential edema-related biomarkers. ADC and FLAIR MRI were utilized for edema classification at three different timepoints: ≤48 h, ∼1 week, and 30 days after injury. Hypointense lesions on ADC (ADC+) suggested the presence of cytotoxic edema while hyperintense lesions on FLAIR (FLAIR+) suggested vasogenic edema. Signal intensity Ratio (SIR) calculations were made using ADC and FLAIR to quantitatively confirm edema progression.

Results

Our results indicated the presence of ADC+ lesions ≤48 h and ∼1 week were associated with FLAIR + lesions at ∼1 week and 30 days, respectively, suggesting some progression of cytotoxic edema to vasogenic edema over time. Ten out of 15 FLAIR + lesions at 30 days (67%) were ADC+ ≤48 h. However, ADC + lesions ≤48 h were not associated with FLAIR + lesions at 30 days; 10 out of 25 (40%) ADC + lesions ≤48 h were FLAIR + at 30 days, which could indicate that some lesions resolved or were not visualized due to associated atrophy or tissue necrosis. Quantitative analysis confirmed the visual progression of some TMB lesions from ADC + to FLAIR+. FLAIR SIRs at ∼1 week were significantly higher when lesions were ADC+ ≤48 h (1.22 [1.08–1.32] vs 1.03 [0.97–1.11], p = 0.002).

Conclusion

Awareness of how cerebral edema can evolve in proximity to TMBs acutely after injury may facilitate identification and monitoring of patients with traumatic cerebrovascular injury and assist in development of novel therapeutic strategies.

导言虽然脑水肿在创伤性脑损伤(TBI)后很常见,但人们对其形成和发展却知之甚少。尤其是轻度 TBI 患者,他们很少接受磁共振成像(MRI)检查,而磁共振成像能在受伤后的头几天发现计算机断层扫描看不到的微妙结构细节。这项研究旨在对一组主要为轻度创伤性脑损伤患者的创伤性微出血(TMBs)的水肿进展进行视觉分类和定量测量,研究时间截至伤后 30 天。研究人员假设,急性损伤后检测到的表观扩散系数(ADC)低密度病变将演变为高密度的流体衰减反转恢复(FLAIR)病变。ADC 和 FLAIR MRI 被用于损伤后≤48 h、∼1 周和 30 天三个不同时间点的水肿分类。ADC上的低密度病变(ADC+)表明存在细胞毒性水肿,而FLAIR上的高密度病变(FLAIR+)表明存在血管源性水肿。结果我们的结果表明,≤48 h 和∼1 周的 ADC+ 病变分别与∼1 周和 30 天的 FLAIR+ 病变相关,这表明随着时间的推移,细胞毒性水肿向血管源性水肿发展。然而,≤48 h的ADC+病变与30天时的FLAIR+病变无关;≤48 h的25个ADC+病变中有10个(40%)在30天时为FLAIR+,这可能表明一些病变消退或因伴有萎缩或组织坏死而未被观察到。定量分析证实了一些 TMB 病变从 ADC + 到 FLAIR + 的视觉进展。当病变 ADC+ ≤48 h 时,1 周后的 FLAIR SIRs 明显更高(1.22 [1.08-1.32] vs 1.03 [0.97-1.11],P = 0.002)。
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引用次数: 0
Short-term blood pressure variability and brain functional network connectivity in older adults 老年人短期血压变化与大脑功能网络连接
Q4 Neuroscience Pub Date : 2024-02-14 DOI: 10.1016/j.ynirp.2024.100198
Isabel J. Sible , Jung Yun Jang , Anna E. Blanken , John Paul M. Alitin , Allie Engstrom , Shubir Dutt , Anisa J. Marshall , Arunima Kapoor , Fatemah Shenasa , Aimée Gaubert , Amy Nguyen , Farrah Ferrer , David R. Bradford , Kathleen E. Rodgers , Mara Mather , S. Duke Han , Daniel A. Nation

Background

Blood pressure variability is increasingly linked with cerebrovascular disease and Alzheimer's disease, independent of mean blood pressure levels. Elevated blood pressure variability is also associated with attenuated cerebrovascular reactivity, which may have implications for functional hyperemia underpinning brain network connectivity. It remains unclear whether blood pressure variability is related to functional network connectivity. We examined relationships between beat-to-beat blood pressure variability and functional connectivity in brain networks vulnerable to aging and Alzheimer's disease.

Methods

53 community-dwelling older adults (mean [SD] age = 69.9 [7.5] years, 62.3% female) without history of dementia or clinical stroke underwent continuous blood pressure monitoring and resting state fMRI scan. Blood pressure variability was calculated as variability independent of mean. Functional connectivity was determined by resting state fMRI for several brain networks: default, salience, dorsal attention, fronto-parietal, and language. Multiple linear regression examined relationships between short-term blood pressure variability and functional network connectivity.

Results

Elevated short-term blood pressure variability was associated with lower functional connectivity in the default network (systolic: standardized ß = −0.30 [95% CI -0.59, −0.01], p = .04). There were no significant associations between blood pressure variability and connectivity in other functional networks or between mean blood pressure and functional connectivity in any network.

Discussion

Older adults with elevated short-term blood pressure variability exhibit lower resting state functional connectivity in the default network. Findings support the role of blood pressure variability in neurovascular dysfunction and Alzheimer's disease. Blood pressure variability may represent an understudied early vascular risk factor for neurovascular dysfunction relevant to Alzheimer's disease, with potential therapeutic implications.

背景血压变异性与脑血管疾病和阿尔茨海默病的关系日益密切,与平均血压水平无关。血压变异性升高还与脑血管反应性减弱有关,这可能会对支撑大脑网络连接的功能性充血产生影响。目前还不清楚血压变异性是否与功能性网络连接有关。我们研究了易受衰老和阿尔茨海默病影响的大脑网络中逐次跳动的血压变异性与功能连通性之间的关系。方法53名居住在社区的老年人(平均 [SD] 年龄 = 69.9 [7.5] 岁,62.3% 为女性)接受了连续血压监测和静息状态 fMRI 扫描,他们没有痴呆或临床中风病史。血压变异性按独立于平均值的变异性计算。通过静息状态 fMRI 确定了几个大脑网络的功能连接性:默认网络、显著性网络、背侧注意网络、前顶叶网络和语言网络。多元线性回归检验了短期血压变异性与功能网络连通性之间的关系。结果短期血压变异性升高与默认网络功能连通性降低有关(收缩压:标准化 ß = -0.30 [95% CI -0.59, -0.01],p = .04)。讨论短期血压变异性升高的老年人在默认网络中表现出较低的静息状态功能连通性。研究结果支持血压变异性在神经血管功能障碍和阿尔茨海默病中的作用。血压变异性可能是与阿尔茨海默病相关的神经血管功能障碍的早期血管风险因素,但未被充分研究,具有潜在的治疗意义。
{"title":"Short-term blood pressure variability and brain functional network connectivity in older adults","authors":"Isabel J. Sible ,&nbsp;Jung Yun Jang ,&nbsp;Anna E. Blanken ,&nbsp;John Paul M. Alitin ,&nbsp;Allie Engstrom ,&nbsp;Shubir Dutt ,&nbsp;Anisa J. Marshall ,&nbsp;Arunima Kapoor ,&nbsp;Fatemah Shenasa ,&nbsp;Aimée Gaubert ,&nbsp;Amy Nguyen ,&nbsp;Farrah Ferrer ,&nbsp;David R. Bradford ,&nbsp;Kathleen E. Rodgers ,&nbsp;Mara Mather ,&nbsp;S. Duke Han ,&nbsp;Daniel A. Nation","doi":"10.1016/j.ynirp.2024.100198","DOIUrl":"https://doi.org/10.1016/j.ynirp.2024.100198","url":null,"abstract":"<div><h3>Background</h3><p>Blood pressure variability is increasingly linked with cerebrovascular disease and Alzheimer's disease, independent of mean blood pressure levels. Elevated blood pressure variability is also associated with attenuated cerebrovascular reactivity, which may have implications for functional hyperemia underpinning brain network connectivity. It remains unclear whether blood pressure variability is related to functional network connectivity. We examined relationships between beat-to-beat blood pressure variability and functional connectivity in brain networks vulnerable to aging and Alzheimer's disease.</p></div><div><h3>Methods</h3><p>53 community-dwelling older adults (mean [SD] age = 69.9 [7.5] years, 62.3% female) without history of dementia or clinical stroke underwent continuous blood pressure monitoring and resting state fMRI scan. Blood pressure variability was calculated as variability independent of mean. Functional connectivity was determined by resting state fMRI for several brain networks: default, salience, dorsal attention, fronto-parietal, and language. Multiple linear regression examined relationships between short-term blood pressure variability and functional network connectivity.</p></div><div><h3>Results</h3><p>Elevated short-term blood pressure variability was associated with lower functional connectivity in the default network (systolic: standardized ß = −0.30 [95% CI -0.59, −0.01], <em>p</em> = .04). There were no significant associations between blood pressure variability and connectivity in other functional networks or between mean blood pressure and functional connectivity in any network.</p></div><div><h3>Discussion</h3><p>Older adults with elevated short-term blood pressure variability exhibit lower resting state functional connectivity in the default network. Findings support the role of blood pressure variability in neurovascular dysfunction and Alzheimer's disease. Blood pressure variability may represent an understudied early vascular risk factor for neurovascular dysfunction relevant to Alzheimer's disease, with potential therapeutic implications.</p></div>","PeriodicalId":74277,"journal":{"name":"Neuroimage. Reports","volume":"4 1","pages":"Article 100198"},"PeriodicalIF":0.0,"publicationDate":"2024-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666956024000047/pdfft?md5=07c32785fcf2515030865c5389daa8ae&pid=1-s2.0-S2666956024000047-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139733440","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Image harmonization improves consistency of intra-rater delineations of MS lesions in heterogeneous MRI 图像协调提高了多发性硬化症病变在异质磁共振成像中评分者内部划分的一致性
Q4 Neuroscience Pub Date : 2024-02-02 DOI: 10.1016/j.ynirp.2024.100195
Aaron Carass , Danielle Greenman , Blake E. Dewey , Peter A. Calabresi , Jerry L. Prince , Dzung L. Pham

Clinical magnetic resonance images (MRIs) lack a standard intensity scale due to differences in scanner hardware and the pulse sequences used to acquire the images. When MRIs are used for quantification, as in the evaluation of white matter lesions (WMLs) in multiple sclerosis, this lack of intensity standardization becomes a critical problem affecting both the staging and tracking of the disease and its treatment. This paper presents a study of harmonization on WML segmentation consistency, which is evaluated using an object detection classification scheme that incorporates manual delineations from both the original and harmonized MRIs. A cohort of ten people scanned on two different imaging platforms was studied. An expert rater, blinded to the image source, manually delineated WMLs on images from both scanners before and after harmonization. It was found that there is closer agreement in both global and per-lesion WML volume and spatial distribution after harmonization, demonstrating the importance of image harmonization prior to the creation of manual delineations. These results could lead to better truth models in both the development and evaluation of automated lesion segmentation algorithms.

由于扫描仪硬件和用于获取图像的脉冲序列不同,临床磁共振图像(MRI)缺乏标准的强度标度。当磁共振成像用于量化时,如评估多发性硬化症的白质病变(WMLs),这种强度标准化的缺乏就成为影响疾病分期、跟踪和治疗的关键问题。本文介绍了一项关于白质病变分割一致性的协调研究,该研究使用对象检测分类方案进行评估,该方案结合了原始磁共振成像和协调磁共振成像的手动划分。研究对象包括在两种不同成像平台上扫描的十个人。一位对图像来源视而不见的专家评分员在协调前后对两台扫描仪的图像进行了 WML 人工划线。结果发现,在协调后,全球和每个病灶的 WML 体积和空间分布都更加一致,这说明了在创建手动划界之前进行图像协调的重要性。这些结果可以为自动病灶分割算法的开发和评估提供更好的真相模型。
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引用次数: 0
Parkinsonian central pain is linked to the connectivity of the nucleus accumbens and the anterior insula 帕金森病中枢性疼痛与凹凸核和前脑岛的连接有关
Q4 Neuroscience Pub Date : 2024-02-02 DOI: 10.1016/j.ynirp.2024.100197
Karel Joineau , Mathilde Boussac , Patrice Peran , David Devos , Jean Luc Houeto , Sophie Drapier , David Maltete , Jesus Aguilar , Estelle Harroch , Margherita Fabbri , Clémence Leung , Fabienne Ory-Magne , Melissa Tir , Christine Tranchant , Hayet Salhi , Solène Frismand , Frederique Fluchere , Ana Marques , Olivier Rascol , Emeline Descamps , Christine Brefel-Courbon

Pain is a frequent and disabling non-motor symptom of Parkinson’s Disease (PD). Yet, no treatment to date can efficiently reduce this pain. This article investigates the brain functional connectivity of PD patients with central pain and the effects of levodopa and oxycodone on this connectivity.

Thirty-eight PD patients received either levodopa, oxycodone, or a placebo during an eight-week period. Pain intensity was evaluated using the Visual Analogue Scale and resting-state functional connectivity was measured before and after treatments. PD patients were also separated into two groups: responders and non-responders.

At baseline, the intensity of pain was correlated with the connectivity between the anterior insula and the posterior cingulate cortex and between the nucleus accumbens, the brainstem, and the hippocampus. Levodopa and oxycodone had no specific effects on functional connectivity. Responders had a decrease in connectivity between the anterior insula and the posterior cingulate cortex, while non-responders showed an increase in connectivity.

The correlation between pain intensity and specific brain connectivity may represent a “hyper-awareness” of pain and a distortion of learning and memory systems in PD patients with central pain, leading to a state of chronic pain. The placebo effect could explain the changes in connectivity that are associated with a potential reduction in pain awareness.

疼痛是帕金森病(Parkinson's Disease,PD)经常出现的一种致残性非运动症状。然而,迄今为止还没有一种治疗方法能有效减轻这种疼痛。本文研究了伴有中枢性疼痛的帕金森病患者的大脑功能连通性,以及左旋多巴和羟考酮对这种连通性的影响。38 名帕金森病患者在为期八周的时间里接受了左旋多巴、羟考酮或安慰剂的治疗。使用视觉模拟量表评估疼痛强度,并在治疗前后测量静息态功能连接。基线时,疼痛强度与前脑岛和后扣带回皮层之间的连通性相关,与伏隔核、脑干和海马之间的连通性相关。左旋多巴和羟考酮对功能连接没有特定影响。疼痛强度与特定大脑连通性之间的相关性可能代表了中枢性疼痛的帕金森病患者对疼痛的 "超意识 "以及学习和记忆系统的扭曲,从而导致慢性疼痛状态。安慰剂效应可以解释连通性的变化,而连通性的变化与疼痛意识的潜在降低有关。
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引用次数: 0
Clinical performance review for 3-D Deep Learning segmentation of stroke infarct from diffusion-weighted images 从弥散加权图像中对中风梗塞进行三维深度学习分割的临床性能评估
Q4 Neuroscience Pub Date : 2024-01-29 DOI: 10.1016/j.ynirp.2024.100196
Freda Werdiger , Vignan Yogendrakumar , Milanka Visser , James Kolacz , Christina Lam , Mitchell Hill , Chushuang Chen , Mark W. Parsons , Andrew Bivard

Introduction

During the subacute phase of ischemic stroke, MR diffusion-weighted imaging (DWI) is used to assess the extent of tissue injury. Segmentation of DWI infarct is challenging due to disease variability, but Deep Learning (DL) provides a solution, outperforming existing methods on small datasets. However, a lack of clinically meaningful performance evaluation hinders clinical translation. Here we develop a DL DWI segmentation tool and provide clinical performance review.

Methods

Subjects in this retrospective study presented with stroke symptoms and later underwent DWI imaging. DL architectures U-Net and DenseNet were used to develop a DWI segmentation tool. The Dice Similarly Coefficient (DSC) was used to select the best- and worst-performing model. Clinical experts reviewed these models on the clinical test set, agreeing with the model if no 'significant’ error was present. The average agreement with the model and interrater agreement was also derived.

Results

In total, 573 participants with an ischemic stroke were included. The DenseNet delivered the best model (DSC = 0.831 ± 0.064) with a mean inference time of 0.07 s. Clinicians compared this with the worst model (U-Net, DSC = 0.759 ± 0.122), agreeing with the DenseNet predictions more than the U-Net (83.8 % vs. 79.3 %). Clinicians also agreed with each other more over performance interpretation when evaluating the DenseNet over the U-Net (87.9 % vs. 72.7 %).

Conclusion

Our DWI segmentation tool achieved high performance with clinical review providing meaningful performance evaluation. Model development will continue towards prospective deployment before which clinical review will be repeated. This work will benefit physicians in assessing patient prognosis.

导言在缺血性中风的亚急性阶段,磁共振弥散加权成像(DWI)用于评估组织损伤的程度。由于疾病的可变性,DWI 梗死的分割具有挑战性,但深度学习(DL)提供了一种解决方案,在小型数据集上优于现有方法。然而,缺乏有临床意义的性能评估阻碍了临床转化。在此,我们开发了一种 DL DWI 分割工具,并提供了临床性能评估。方法在这项回顾性研究中,受试者出现中风症状,随后接受了 DWI 成像检查。DL 架构 U-Net 和 DenseNet 被用于开发 DWI 分割工具。Dice Similarly Coefficient (DSC) 用于选择表现最好和最差的模型。临床专家在临床测试集上对这些模型进行审查,如果没有出现 "重大 "错误,则同意该模型。结果共纳入了 573 名缺血性中风患者。DenseNet 提供了最佳模型(DSC = 0.831 ± 0.064),平均推理时间为 0.07 秒。临床医生将其与最差模型(U-Net,DSC = 0.759 ± 0.122)进行了比较,DenseNet 预测结果的一致性高于 U-Net(83.8% 对 79.3%)。临床医生在评估 DenseNet 而不是 U-Net 时,对性能解释的意见也更一致(87.9% 对 72.7%)。模型开发工作将继续进行,以实现前瞻性部署,在此之前将再次进行临床评估。这项工作将有助于医生评估患者的预后。
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引用次数: 0
Validation of a semi-automated method to quantify lesion volume changes in multiple sclerosis on 2D proton-density-weighted scans based on image subtraction 基于图像减影的多发性硬化症二维质子密度加权扫描病灶体积变化半自动量化方法的验证
Q4 Neuroscience Pub Date : 2023-12-21 DOI: 10.1016/j.ynirp.2023.100194
Rozemarijn M. Mattiesing , Serena Stel , Alysha S. Mangroe , Iman Brouwer , Adriaan Versteeg , Ronald A. van Schijndel , Bernard M.J. Uitdehaag , Frederik Barkhof , Hugo Vrenken , Joost P.A. Kuijer

Background

The detection and quantification of changes in white matter lesions in the brain is important to monitor treatment effects in patients with multiple sclerosis (MS). Existing automatic tools predominantly require FLAIR images as input which are not always available, or only focus on new/enlarging activity. Therefore, we developed and validated a semi-automated method to quantify lesion volume changes based on 2D proton-density (PD)-weighted images and image subtraction. This semi-automated method provides insight in both “positive” activity (defined as new and enlarging lesions) and “negative” activity (disappearing and shrinking lesions).

Methods

Yearly MRI scans of patients with early MS from the REFLEX/REFLEXION studies were used. The maximum follow-up period was 5 years. Two PD-weighted images were normalized, registered to a common halfway-space, intensity-matched, and subsequently subtracted. Within manual lesion masks, lesion changes were quantified using a subtraction intensity threshold and total lesion volume change (TLVC) was calculated. Reproducibility was measured by assessing transitivity, specifically, we calculated the intraclass correlation coefficient for the absolute agreement (ICCtrans) and the difference (Δtrans) between the direct one-step and indirect multi-step measurements of TLVC between two visits. Accuracy was assessed by calculating both the intraclass correlation coefficient for absolute agreement (ICCacc) and the difference (Δacc) between the one-step semi-automated TLVC and manually measured lesion volume change (numerical difference) between two visits. Spearman's correlations (rs) were used to assess the relation of global and central atrophy, manually measured T2 lesion volume, and lesion volume change with the method's performance as reflected by the difference measures |Δtrans| and Δacc. An alpha of 0.05 was used as the cut-off for significance.

Results

Reproducibility was excellent, with ICCtrans values ranging from 0.90 to 0.96. Accuracy was good overall, with ICCacc values ranging from 0.67 to 0.86. The standard deviation of Δtrans ranged from 0.25 to 0.86 mL. The mean of Δacc ranged from 0.11 to 0.37 mL and was significantly different from zero. Both global and central atrophy significantly correlated with lower reproducibility (correlation of |Δtrans| with global atrophy, rs = −0.19 to −0.28, and correlation of |Δtrans| with central atrophy, rs = 0.22 to 0.34). There was generally no significant correlation between global/central atrophy and accuracy. Higher lesion volume was significantly correlated with lower reproducibility (rs = 0.62). Higher lesion volume change was significantly correlated with lower reproducibility (rs = 0.22) and lower acc

背景检测和量化脑白质病变的变化对于监测多发性硬化症(MS)患者的治疗效果非常重要。现有的自动工具主要需要 FLAIR 图像作为输入,而 FLAIR 图像并不总是可用的,或者只关注新的/增大的活动。因此,我们开发并验证了一种基于二维质子密度(PD)加权图像和图像减影的半自动方法,用于量化病灶体积的变化。这种半自动方法可以深入了解 "阳性 "活动(定义为新增和扩大的病灶)和 "阴性 "活动(消失和缩小的病灶)。随访时间最长为 5 年。对两张 PD 加权图像进行归一化处理,将其注册到一个共同的半空间,进行强度匹配,然后进行减法。在手动病变掩膜内,使用减影强度阈值量化病变变化,并计算病变总体积变化(TLVC)。再现性是通过评估横向性来衡量的,具体来说,我们计算了两次就诊之间 TLVC 的一步直接测量和多步间接测量的绝对一致的类内相关系数 (ICCtrans) 和差值 (Δtrans)。通过计算绝对一致的类内相关系数(ICCacc)和两次就诊之间一步式半自动 TLVC 与人工测量的病变体积变化(数值差异)之间的差异(Δacc)来评估准确性。斯皮尔曼相关性(rs)用于评估整体和中心萎缩、人工测量的 T2 病灶体积以及病灶体积变化与该方法性能的关系,该性能通过差值测量 |Δtrans| 和 Δacc 反映出来。结果重现性非常好,ICCtrans 值在 0.90 到 0.96 之间。准确性总体良好,ICCacc 值在 0.67 到 0.86 之间。Δtrans 的标准偏差在 0.25 至 0.86 mL 之间。Δacc 的平均值在 0.11 到 0.37 mL 之间,与零有显著差异。整体萎缩和中心萎缩都与较低的再现性明显相关(|Δtrans|与整体萎缩的相关性,rs = -0.19 至 -0.28;|Δtrans|与中心萎缩的相关性,rs = 0.22 至 0.34)。总体/中心萎缩与准确性之间一般没有明显的相关性。病变体积越大,可重复性越低(rs = 0.62)。病灶体积变化越大,可重复性越低(rs = 0.22),准确性越低(Δacc 与病灶体积变化的相关性,rs = -0.52)。结论总的来说,半自动减影法可以对(早期)多发性硬化症随时间变化的病灶体积变化进行有效、可靠的定量研究,随访时间最长可达 5 年。
{"title":"Validation of a semi-automated method to quantify lesion volume changes in multiple sclerosis on 2D proton-density-weighted scans based on image subtraction","authors":"Rozemarijn M. Mattiesing ,&nbsp;Serena Stel ,&nbsp;Alysha S. Mangroe ,&nbsp;Iman Brouwer ,&nbsp;Adriaan Versteeg ,&nbsp;Ronald A. van Schijndel ,&nbsp;Bernard M.J. Uitdehaag ,&nbsp;Frederik Barkhof ,&nbsp;Hugo Vrenken ,&nbsp;Joost P.A. Kuijer","doi":"10.1016/j.ynirp.2023.100194","DOIUrl":"https://doi.org/10.1016/j.ynirp.2023.100194","url":null,"abstract":"<div><h3>Background</h3><p>The detection and quantification of changes in white matter lesions in the brain is important to monitor treatment effects in patients with multiple sclerosis (MS). Existing automatic tools predominantly require FLAIR images as input which are not always available, or only focus on new/enlarging activity. Therefore, we developed and validated a semi-automated method to quantify lesion volume changes based on 2D proton-density (PD)-weighted images and image subtraction. This semi-automated method provides insight in both “positive” activity (defined as new and enlarging lesions) and “negative” activity (disappearing and shrinking lesions).</p></div><div><h3>Methods</h3><p>Yearly MRI scans of patients with early MS from the REFLEX/REFLEXION studies were used. The maximum follow-up period was 5 years. Two PD-weighted images were normalized, registered to a common halfway-space, intensity-matched, and subsequently subtracted. Within manual lesion masks, lesion changes were quantified using a subtraction intensity threshold and total lesion volume change (TLVC) was calculated. Reproducibility was measured by assessing transitivity, specifically, we calculated the intraclass correlation coefficient for the absolute agreement (ICC<sub>trans</sub>) and the difference (Δ<sub>trans</sub>) between the direct one-step and indirect multi-step measurements of TLVC between two visits. Accuracy was assessed by calculating both the intraclass correlation coefficient for absolute agreement (ICC<sub>acc</sub>) and the difference (Δ<sub>acc</sub>) between the one-step semi-automated TLVC and manually measured lesion volume change (numerical difference) between two visits. Spearman's correlations (r<sub>s</sub>) were used to assess the relation of global and central atrophy, manually measured T2 lesion volume, and lesion volume change with the method's performance as reflected by the difference measures |Δ<sub>trans</sub>| and Δ<sub>acc</sub>. An alpha of 0.05 was used as the cut-off for significance.</p></div><div><h3>Results</h3><p>Reproducibility was excellent, with ICC<sub>trans</sub> values ranging from 0.90 to 0.96. Accuracy was good overall, with ICC<sub>acc</sub> values ranging from 0.67 to 0.86. The standard deviation of Δ<sub>trans</sub> ranged from 0.25 to 0.86 mL. The mean of Δ<sub>acc</sub> ranged from 0.11 to 0.37 mL and was significantly different from zero. Both global and central atrophy significantly correlated with lower reproducibility (correlation of |Δ<sub>trans</sub>| with global atrophy, r<sub>s</sub> = −0.19 to −0.28, and correlation of |Δ<sub>trans</sub>| with central atrophy, r<sub>s</sub> = 0.22 to 0.34). There was generally no significant correlation between global/central atrophy and accuracy. Higher lesion volume was significantly correlated with lower reproducibility (r<sub>s</sub> = 0.62). Higher lesion volume change was significantly correlated with lower reproducibility (r<sub>s</sub> = 0.22) and lower acc","PeriodicalId":74277,"journal":{"name":"Neuroimage. Reports","volume":"4 1","pages":"Article 100194"},"PeriodicalIF":0.0,"publicationDate":"2023-12-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666956023000399/pdfft?md5=938a53ab9f8e3d9c298e4de27ddb9da2&pid=1-s2.0-S2666956023000399-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139033848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ImageNomer: Description of a functional connectivity and omics analysis tool and case study identifying a race confound ImageNomer:描述功能连接和组学分析工具以及识别种族混淆的案例研究
Q4 Neuroscience Pub Date : 2023-11-07 DOI: 10.1016/j.ynirp.2023.100191
Anton Orlichenko , Grant Daly , Ziyu Zhou , Anqi Liu , Hui Shen , Hong-Wen Deng , Yu-Ping Wang

Most packages for the analysis of fMRI-based functional connectivity (FC) and genomic data are used with a programming language interface, lacking an easy-to-navigate GUI frontend. This exacerbates two problems found in these types of data: demographic confounds and quality control in the face of high dimensionality of features. The reason is that it is too slow and cumbersome to use a programming interface to create all the necessary visualizations required to identify all correlations, confounding effects, or quality control problems in a dataset. FC in particular usually contains tens of thousands of features per subject, and can only be summarized and efficiently explored using visualizations. To remedy this situation, we have developed ImageNomer, a data visualization and analysis tool that allows inspection of both subject-level and cohort-level demographic, genomic, and imaging features. The software is Python-based, runs in a self-contained Docker image, and contains a browser-based GUI frontend. We demonstrate the usefulness of ImageNomer by identifying an unexpected race confound when predicting achievement scores in the Philadelphia Neurodevelopmental Cohort (PNC) dataset, which contains multitask fMRI and single nucleotide polymorphism (SNP) data of healthy adolescents. In the past, many studies have attempted to use FC to identify achievement-related features in fMRI. Using ImageNomer to visualize trends in achievement scores between races, we find a clear potential for confounding effects if race can be predicted using FC. Using correlation analysis in the ImageNomer software, we show that FCs correlated with Wide Range Achievement Test (WRAT) score are in fact more highly correlated with race. Investigating further, we find that whereas both FC and SNP (genomic) features can account for 10–15% of WRAT score variation, this predictive ability disappears when controlling for race. We also use ImageNomer to investigate race-FC correlation in the Bipolar and Schizophrenia Network for Intermediate Phenotypes (BSNIP) dataset. In this work, we demonstrate the advantage of our ImageNomer GUI tool in data exploration and confound detection. Additionally, this work identifies race as a strong confound in FC data and casts doubt on the possibility of finding unbiased achievement-related features in fMRI and SNP data of healthy adolescents.

大多数用于分析基于fmri的功能连接(FC)和基因组数据的软件包都使用编程语言界面,缺乏易于导航的GUI前端。这加剧了在这类数据中发现的两个问题:人口统计混淆和面对高维特征的质量控制。原因是,使用编程接口创建识别数据集中的所有相关性、混淆效应或质量控制问题所需的所有必要的可视化,速度太慢,也太麻烦。特别是FC,每个主题通常包含数万个特征,只能使用可视化来总结和有效地探索。为了纠正这种情况,我们开发了ImageNomer,这是一种数据可视化和分析工具,可以检查受试者水平和队列水平的人口统计学、基因组学和成像特征。该软件基于python,运行在一个独立的Docker镜像中,并包含一个基于浏览器的GUI前端。我们通过在费城神经发育队列(PNC)数据集(包含健康青少年的多任务功能磁共振成像和单核苷酸多态性(SNP)数据集)中预测成绩分数时识别意想不到的种族混淆,证明了ImageNomer的实用性。在过去,许多研究试图使用FC来识别fMRI中与成就相关的特征。使用ImageNomer可视化不同种族之间成就分数的趋势,我们发现如果可以使用FC来预测种族,就有可能产生混淆效应。通过ImageNomer软件的相关分析,我们发现与WRAT成绩相关的FCs实际上与种族的相关性更高。进一步调查发现,尽管FC和SNP(基因组)特征都可以解释WRAT评分变化的10-15%,但当控制种族时,这种预测能力就消失了。我们还使用ImageNomer来研究双相情感障碍和精神分裂症中间表型网络(BSNIP)数据集中的种族- fc相关性。在这项工作中,我们展示了ImageNomer GUI工具在数据探索和混淆检测方面的优势。此外,这项工作确定种族是FC数据中的一个严重混淆因素,并对在健康青少年的fMRI和SNP数据中发现公正的成就相关特征的可能性表示怀疑。
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引用次数: 0
Task-related oxygenation in the prefrontal cortex as a function of mask-wearing frequency: An empirical test using functional near-infrared spectroscopy 前额叶皮层的任务相关氧合与戴口罩频率的关系:一项使用功能近红外光谱的实证测试
Q4 Neuroscience Pub Date : 2023-11-02 DOI: 10.1016/j.ynirp.2023.100192
Peter A. Hall , Mohammad Nazmus Sakib , Anna Hudson , Alkarim Billawala , Geoffrey T. Fong , Hasan Ayaz

Objective

Introduction of brain hypoxia by frequent mask-wearing is a concern voiced by some who resist masking mandates. Studies have examined acute effects of one-shot mask-wearing on peripheral and cerebral oxygenation in the laboratory, but not effects of everyday mask-wearing frequencies on task-related functional activation. The objective of the current study was to examine whether frequency of mask-wearing in daily life is associated with lower task-related brain oxygenation levels, and whether the magnitude of any such effects vary by age and sex.

Methods

Participants were 78 community-dwelling adults between the ages of 18 and 84 years, all of whom were vaccinated at the time of participation; 65.4% (n = 51) were female. Frequency of mask-wearing was assessed using survey questions on mask-wearing practice during an active COVID-19 mask mandate. Recordings of task-related cerebral oxygenation were taken during the completion of a simple reaction time task using 16-channel functional near-infrared spectroscopy (fNIRS).

Results

The psychomotor vigilance task elicited reliable increases in cerebral oxygenation within the right mid-frontal gyrus (F(1,61.345) = 15.975, p < .001). However, there was no significant association between everyday masking frequency and performance on the psychomotor vigilance task (b = 0.059, SE = 0.092 (95% CI [-0.122, 0.241]), t = .646, p = .520), nor any association between everyday masking frequency and task-related brain oxygenation on any measurement channel (all ps < .05).

Conclusions

Higher mask-wearing frequency in daily life is not associated with significantly lower levels of task-related brain oxygenation, or worse performance on a sustained attention task.

目的:经常戴口罩引起脑缺氧是一些反对戴口罩的人所关注的问题。在实验室中,研究已经检查了一次性戴口罩对外周和大脑氧合的急性影响,但没有检查日常戴口罩频率对任务相关功能激活的影响。目前这项研究的目的是研究日常生活中戴口罩的频率是否与较低的脑氧合水平有关,以及这种影响的程度是否因年龄和性别而异。研究对象为78名年龄在18岁至84岁之间的社区居民,他们在参与研究时均接种了疫苗;65.4% (n = 51)为女性。在COVID-19口罩强制执行期间,使用关于佩戴口罩实践的调查问题评估佩戴口罩的频率。在完成简单的反应时间任务时,使用16通道功能近红外光谱(fNIRS)记录任务相关的脑氧合。结果精神运动警觉性任务可引起右侧额叶中回脑氧合增加(F(1,61.345) = 15.975, p <措施)。然而,日常掩蔽频率与精神运动警觉性任务的表现之间没有显著关联(b = 0.059, SE = 0.092 (95% CI [-0.122, 0.241]), t = 0.646, p = 0.520),日常掩蔽频率与任何测量通道上的任务相关脑氧合之间也没有任何关联(所有ps <. 05)。结论日常生活中戴口罩频率高与任务相关脑氧合水平显著降低或持续注意力任务的表现不相关。
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