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Advancements in mass spectrometry-based proteomics: a new era in pathology research and diagnostics. 基于质谱的蛋白质组学的进步:病理学研究和诊断的新时代。
Pub Date : 2024-11-01 Epub Date: 2024-11-07 DOI: 10.1007/s00292-024-01390-x
Tilman Werner, Matthias Fahrner, Oliver Schilling

Background: Mass spectrometry (MS)-based proteomics is rapidly transforming pathology research and diagnostics by enabling comprehensive studies of protein expression and post-translational modifications (PTMs).

Objective: This article discusses recent advancements in MS-based proteomics, focusing on emerging technologies in sample preparation, MS instrumentation, and data analysis. These developments are scrutinized for their applications in clinical cohort studies and molecular pathology diagnostics.

Materials and methods: The article reviews innovations in automated sample preparation, chromatography systems, advanced MS technologies, and proteomic data analysis in the context of pathology. Specific applications such as liquid biopsy, spike-in heavy peptide panels, immunopeptidomics, and PTM screening are highlighted alongside opportunities for data integration.

Results: Recent technological improvements have significantly increased the throughput, precision, and scope of proteomic studies, enabling the analysis of large clinical cohorts and small specimens with unprecedented sensitivity. Advanced MS techniques have broadened applications, opening new avenues for discovery and diagnosis of marker proteins and therapeutic targets.

Conclusion: Advancements in MS-based proteomics have created new opportunities in clinical research and diagnostics. By facilitating more comprehensive and integrated analyses of proteomes, these technologies are set to play a pivotal role in the future of personalized medicine and pathology research.

背景:基于质谱(MS)的蛋白质组学可对蛋白质表达和翻译后修饰(PTMs)进行全面研究,从而迅速改变病理学研究和诊断方法:本文讨论了基于 MS 的蛋白质组学的最新进展,重点是样品制备、MS 仪器和数据分析方面的新兴技术。材料与方法:文章回顾了自动样本制备、色谱系统、先进 MS 技术和病理学蛋白质组数据分析方面的创新。文章重点介绍了液体活检、穗入重肽面板、免疫肽组学和 PTM 筛选等具体应用以及数据整合的机会:最近的技术改进大大提高了蛋白质组学研究的通量、精确度和范围,从而能够以前所未有的灵敏度分析大型临床队列和小型标本。先进的 MS 技术扩大了应用范围,为发现和诊断标志蛋白和治疗靶点开辟了新途径:基于 MS 的蛋白质组学的进步为临床研究和诊断创造了新的机遇。通过促进对蛋白质组进行更全面的综合分析,这些技术必将在未来的个性化医学和病理学研究中发挥关键作用。
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引用次数: 0
[Solitary fibrous tumor in a thyroid follicular adenoma]. [甲状腺滤泡腺瘤中的孤立性纤维瘤]。
Pub Date : 2024-11-01 Epub Date: 2024-09-12 DOI: 10.1007/s00292-024-01353-2
Sarah Theurer, Simon Schimmack, Hideo A Baba

A 28-year-old female patient developed a 5.5 cm progressive thyroid nodule that was surgically removed due to local symptoms. Histologically, a solitary fibrous tumor (SFT) in a thyroid adenoma was diagnosed. The tumor had a specific NAB2-STAT6 fusion.Solitary fibrous tumors rarely occur in the thyroid gland and are described as both primary and secondary manifestations. The diagnosis, prognosis assessment and treatment decision are carried out analogously to SFT of other localizations.

一名28岁的女性患者出现了一个5.5厘米的进行性甲状腺结节,由于局部症状,她接受了手术切除。组织学诊断为甲状腺腺瘤中的单发纤维瘤(SFT)。该肿瘤有特异性的NAB2-STAT6融合。单发纤维性肿瘤很少发生在甲状腺,有原发性和继发性两种表现。其诊断、预后评估和治疗决定与其他部位的SFT类似。
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引用次数: 0
[Report of the cardiac, vascular, renal, and transplantation pathology working group]. [心脏、血管、肾脏和移植病理学工作组报告]。
Pub Date : 2024-11-01 Epub Date: 2024-09-09 DOI: 10.1007/s00292-024-01352-3
J H Bräsen, J Wohlschläger
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引用次数: 0
[Report of the German Society of Pathology Thoracic Pathology Working Group]. [德国病理学会胸腔病理学工作组报告]。
Pub Date : 2024-11-01 Epub Date: 2024-09-24 DOI: 10.1007/s00292-024-01362-1
Christiane Kümpers, Maximilian von Laffert
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引用次数: 0
[Report of the German Society for Pathology Head and Neck Pathology Working Group : 107th Annual Meeting of the German Society for Pathology, Garching near Munich, May 2024]. [德国病理学学会头颈部病理学工作组报告:第 107 届德国病理学学会年会,2024 年 5 月,慕尼黑附近的加兴]。
Pub Date : 2024-11-01 Epub Date: 2024-11-07 DOI: 10.1007/s00292-024-01388-5
N Rupp
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引用次数: 0
Boolean network modeling and its integration with experimental read-outs : An interdisciplinary presentation using a leukemia model. 布尔网络建模及其与实验读数的整合:使用白血病模型的跨学科演示。
Pub Date : 2024-11-01 Epub Date: 2024-11-13 DOI: 10.1007/s00292-024-01395-6
Julia Maier, Julian D Schwab, Silke D Werle, Ralf Marienfeld, Peter Möller, Nadine T Gaisa, Nensi Ikonomi, Hans A Kestler

The limited availability of suitable animal models and cell lines often impedes experimental cancer research. Wet-laboratory experiments are also time-consuming and cost-intensive. In this review, we present an in silico modeling strategy, namely, Boolean network (BN) models, and demonstrate how it could be applied to streamline experimental design and to focus the effort of experimental read-outs. Boolean network models allow for the dynamic analysis of large molecular signaling pathways and their crosstalks. After establishing and validating a specific tumor model, mechanistic insights into the tumor cell behavior can be gained by studying the trajectories of different tumor phenotypes. Also, tumor driver and drug target screenings can be performed. These automatic screenings can help to identify new intervention targets and putative biomarkers for tumor evolution, hence guiding new wet-laboratory experiments. The goal of this round-up is to demonstrate how to establish, validate, and use BN modeling and its crosstalks in classic wet-laboratory research using a chronic lymphocytic leukemia (CLL) BN model.

合适的动物模型和细胞系有限,往往会阻碍癌症实验研究。湿法实验室实验也耗时费钱。在这篇综述中,我们介绍了一种硅学建模策略,即布尔网络(BN)模型,并展示了如何将其应用于简化实验设计和集中实验读数的工作。布尔网络模型可对大型分子信号通路及其交叉关系进行动态分析。在建立和验证特定肿瘤模型后,通过研究不同肿瘤表型的轨迹,可以获得对肿瘤细胞行为的机理认识。此外,还可以进行肿瘤驱动因素和药物靶点筛选。这些自动筛选有助于确定新的干预靶点和肿瘤演变的潜在生物标志物,从而指导新的湿实验室实验。本综述的目的是利用慢性淋巴细胞白血病(CLL)BN 模型,展示如何在经典湿实验室研究中建立、验证和使用 BN 建模及其相关技术。
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引用次数: 0
[Report of the German Society for Pathology Working Group on Hematopathology]. [德国病理学学会血液病理学工作组报告]。
Pub Date : 2024-11-01 Epub Date: 2024-11-18 DOI: 10.1007/s00292-024-01389-4
Sylvia Hartmann
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引用次数: 0
Key considerations when implementing new diagnostic technologies in routine practice. 在常规实践中采用新诊断技术时的主要考虑因素。
Pub Date : 2024-11-01 Epub Date: 2024-11-21 DOI: 10.1007/s00292-024-01396-5
Jochen Lennerz

Background: The field of pathology is evolving with the integration of advanced and artificial-intelligence-powered diagnostic technologies. However, there remains a significant gap in clearly outlining the key considerations for the effective implementation of these innovations into clinical care.

Objectives: The aim of this review was to identify and address the essential aspects required to bridge the implementation gap of new diagnostic technologies in pathology.

Material and methods: This review synthesizes key elements from relevant scientific journals, organizational websites, and practical examples from pathology practice. The findings are presented as a structured framework of six key elements, supported by an infographic and illustrative cases from clinical settings.

Results: The key elements are: (1) Innovation depends more on the people driving it than on the work it demands, highlighting the importance of team collaboration and communication; (2) in-depth knowledge of the delivery system emphasizing the importance of care, IT, and administrative layers is crucial; (3) data-driven decision-making in healthcare transformation is central, with an emphasis on the process of converting real-world data (RWD) into actionable real-world evidence (RWE); (4) a proven approach for practice transformation uses a structured (utilization management strategy, UMS) framework; (5) a balanced approach toward financial sustainability, including local and systemic financial strategies, is important; and (6)  ensuring safe and effective progress requires a new, collaborative definition of regulatory science, aligning innovation with regulatory oversight to support technological advancements.

Conclusion: These key aspects offer a foundational framework for integrating new technologies into healthcare. Although not exhaustive, overlooking them would miss a significant opportunity to enhance patient care.

背景:病理学领域正随着先进的人工智能诊断技术的整合而不断发展。然而,在明确概述将这些创新技术有效应用于临床护理的关键因素方面仍存在巨大差距:材料与方法:本综述旨在确定和解决弥补病理诊断新技术实施差距所需的基本方面:本综述综合了相关科学期刊、机构网站和病理学实践案例中的关键要素。研究结果以六个关键要素的结构框架呈现,并辅以信息图表和临床案例说明:结果:关键要素包括(结果:关键要素包括:(1) 创新更多地取决于推动创新的人,而不是创新所要求的工作,这凸显了团队合作与沟通的重要性;(2) 深入了解医疗服务体系,强调护理、信息技术和行政层的重要性至关重要;(3) 在医疗转型中,数据驱动决策至关重要,重点是将真实世界数据(RWD)转化为可操作的真实世界证据(RWE)的过程;(4) 采用结构化(利用管理策略,UMS)框架进行实践转型是行之有效的方法;(5) 必须采用平衡的方法实现财务可持续性,包括地方和系统财务策略;以及 (6) 确保安全有效的进展需要对监管科学进行新的协作定义,使创新与监管监督相一致,以支持技术进步。结论:这些关键方面为将新技术融入医疗保健提供了一个基础框架。尽管并非详尽无遗,但如果忽略了这些方面,就会错失改善患者护理的重要机会。
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引用次数: 0
Hans Konrad Müller-Hermelink : 21.06.1943–11.05.2024. Hans Konrad Müller-Hermelink : 21.06.1943-11.05.2024.
Pub Date : 2024-10-31 DOI: 10.1007/s00292-024-01371-0
Andreas Rosenwald, German Ott
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引用次数: 0
[A lump in the male breast-case report of an unusual tumor manifestation]. [男性乳房肿块--异常肿瘤表现的病例报告]。
Pub Date : 2024-10-16 DOI: 10.1007/s00292-024-01369-8
Torsten Hansen, E Z Kovacs, J Kriegsmann, S M Jud
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引用次数: 0
期刊
Pathologie (Heidelberg, Germany)
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