Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting最新文献

While NLP models often seek to capture cognitive states via language, the validity of predicted states is determined by comparing them to annotations created without access the cognitive states of the authors. In behavioral sciences, cognitive states are instead measured via experiments. Here, we introduce an experiment-based framework for evaluating language-based cognitive style models against human behavior. We explore the phenomenon of decision making, and its relationship to the linguistic style of an individual talking about a recent decision they made. The participants then follow a classical decision-making experiment that captures their cognitive style, determined by how preferences change during a decision exercise. We find that language features, intended to capture cognitive style, can predict participants' decision style with moderate-to-high accuracy (AUC ~ 0.8), demonstrating that cognitive style can be partly captured and revealed by discourse patterns.

Proteins play critical roles in biological systems, yet 99.7% of over 227 million known protein sequences remain uncharacterized due to the limitations of experimental methods. To assist experimentalists in narrowing down hypotheses and accelerating protein characterization, we present Protein2Text, a multimodal large language model that interprets protein sequences and generates informative text to address open-ended questions about protein functions and attributes. By integrating a resampling mechanism within an adapted LLaVA framework, our model effectively maps protein sequences into a language-compatible space, enhancing its capability to handle diverse and complex queries. Trained on a newly curated dataset derived from PubMed articles and rigorously evaluated using four comprehensive benchmarks-including in-domain and cross-domain evaluations-Protein2Text outperforms several existing models in open-ended question-answering tasks. Our work also highlights the limitations of current evaluation metrics applied to template-based approaches, which may lead to misleading results, emphasizing the need for unbiased assessment methods. Our model weights, evaluation datasets, and evaluation scripts are publicly available at https://github.com/alaaj27/Protein2Text.git.

Many diagnostic errors occur because clinicians cannot easily access relevant information in patient Electronic Health Records (EHRs). In this work we propose a method to use LLMs to identify pieces of evidence in patient EHR data that indicate increased or decreased risk of specific diagnoses; our ultimate aim is to increase access to evidence and reduce diagnostic errors. In particular, we propose a Neural Additive Model to make predictions backed by evidence with individualized risk estimates at time-points where clinicians are still uncertain, aiming to specifically mitigate delays in diagnosis and errors stemming from an incomplete differential. To train such a model, it is necessary to infer temporally fine-grained retrospective labels of eventual "true" diagnoses. We do so with LLMs, to ensure that the input text is from before a confident diagnosis can be made. We use an LLM to retrieve an initial pool of evidence, but then refine this set of evidence according to correlations learned by the model. We conduct an in-depth evaluation of the usefulness of our approach by simulating how it might be used by a clinician to decide between a pre-defined list of differential diagnoses.

Opioid related aberrant behaviors (ORABs) present novel risk factors for opioid overdose. This paper introduces a novel biomedical natural language processing benchmark dataset named ODD, for ORAB Detection Dataset. ODD is an expert-annotated dataset designed to identify ORABs from patients' EHR notes and classify them into nine categories; 1) Confirmed Aberrant Behavior, 2) Suggested Aberrant Behavior, 3) Opioids, 4) Indication, 5) Diagnosed opioid dependency, 6) Benzodiazepines, 7) Medication Changes, 8) Central Nervous System-related, and 9) Social Determinants of Health. We explored two state-of-the-art natural language processing models (fine-tuning and prompt-tuning approaches) to identify ORAB. Experimental results show that the prompt-tuning models outperformed the fine-tuning models in most categories and the gains were especially higher among uncommon categories (Suggested Aberrant Behavior, Confirmed Aberrant Behaviors, Diagnosed Opioid Dependence, and Medication Change). Although the best model achieved the highest 88.17% on macro average area under precision recall curve, uncommon classes still have a large room for performance improvement. ODD is publicly available.

Scientific jargon can confuse researchers when they read materials from other domains. Identifying and translating jargon for individual researchers could speed up research, but current methods of jargon identification mainly use corpus-level familiarity indicators rather than modeling researcher-specific needs, which can vary greatly based on each researcher's background. We collect a dataset of over 10K term familiarity annotations from 11 computer science researchers for terms drawn from 100 paper abstracts. Analysis of this data reveals that jargon familiarity and information needs vary widely across annotators, even within the same sub-domain (e.g., NLP). We investigate features representing domain, subdomain, and individual knowledge to predict individual jargon familiarity. We compare supervised and prompt-based approaches, finding that prompt-based methods using information about the individual researcher (e.g., personal publications, self-defined subfield of research) yield the highest accuracy, though the task remains difficult and supervised approaches have lower false positive rates. This research offers insights into features and methods for the novel task of integrating personal data into scientific jargon identification.

Pre-trained language models (PLMs) have attracted enormous attention over the past few years with their unparalleled performances. Meanwhile, the soaring cost to train PLMs as well as their amazing generalizability have jointly contributed to few-shot fine-tuning and prompting as the most popular training paradigms for natural language processing (NLP) models. Nevertheless, existing studies have shown that these NLP models can be backdoored such that model behavior is manipulated when trigger tokens are presented. In this paper, we propose PromptFix, a novel backdoor mitigation strategy for NLP models via adversarial prompt-tuning in few-shot settings. Unlike existing NLP backdoor removal methods, which rely on accurate trigger inversion and subsequent model fine-tuning, PromptFix keeps the model parameters intact and only utilizes two extra sets of soft tokens which approximate the trigger and counteract it respectively. The use of soft tokens and adversarial optimization eliminates the need to enumerate possible backdoor configurations and enables an adaptive balance between trigger finding and preservation of performance. Experiments with various backdoor attacks validate the effectiveness of the proposed method and the performances when domain shift is present further shows PromptFix's applicability to models pre-trained on unknown data source which is the common case in prompt tuning scenarios.

Mental health issues differ widely among individuals, with varied signs and symptoms. Recently, language-based assessments have shown promise in capturing this diversity, but they require a substantial sample of words per person for accuracy. This work introduces the task of Adaptive Language-Based Assessment (ALBA), which involves adaptively ordering questions while also scoring an individual's latent psychological trait using limited language responses to previous questions. To this end, we develop adaptive testing methods under two psychometric measurement theories: Classical Test Theory and Item Response Theory. We empirically evaluate ordering and scoring strategies, organizing into two new methods: a semi-supervised item response theory-based method (ALIRT) and a supervised Actor-Critic model. While we found both methods to improve over non-adaptive baselines, We found ALIRT to be the most accurate and scalable, achieving the highest accuracy with fewer questions (e.g., Pearson r ≈ 0.93 after only 3 questions as compared to typically needing at least 7 questions). In general, adaptive language-based assessments of depression and anxiety were able to utilize a smaller sample of language without compromising validity or large computational costs.

The cloze training objective of Masked Language Models makes them a natural choice for generating plausible distractors for human cloze questions. However, distractors must also be both distinct and incorrect, neither of which is directly addressed by existing neural methods. Evaluation of recent models has also relied largely on automated metrics, which cannot demonstrate the reliability or validity of human comprehension tests. In this work, we first formulate the pedagogically motivated objectives of plausibility, incorrectness, and distinctiveness in terms of conditional distributions from language models. Second, we present an unsupervised, interpretable method that uses these objectives to jointly optimize sets of distractors. Third, we test the reliability and validity of the resulting cloze tests compared to other methods with human participants. We find our method has stronger correlation with teacher-created comprehension tests than the state-of-the-art neural method and is more internally consistent. Our implementation is freely available and can quickly create a multiple choice cloze test from any given passage.

Suicide is an important public health concern and one of the leading causes of death worldwide. Suicidal behaviors, including suicide attempts (SA) and suicide ideations (SI), are leading risk factors for death by suicide. Information related to patients' previous and current SA and SI are frequently documented in the electronic health record (EHR) notes. Accurate detection of such documentation may help improve surveillance and predictions of patients' suicidal behaviors and alert medical professionals for suicide prevention efforts. In this study, we first built Suicide Attempt and Ideation Events (ScAN) dataset, a subset of the publicly available MIMIC III dataset spanning over 12k+ EHR notes with 19k+ annotated SA and SI events information. The annotations also contain attributes such as method of suicide attempt. We also provide a strong baseline model ScANER (Suicide Attempt and Ideation Events Retreiver), a multi-task RoBERTa-based model with a retrieval module to extract all the relevant suicidal behavioral evidences from EHR notes of an hospital-stay and, and a prediction module to identify the type of suicidal behavior (SA and SI) concluded during the patient's stay at the hospital. ScANER achieved a macro-weighted F1-score of 0.83 for identifying suicidal behavioral evidences and a macro F1-score of 0.78 and 0.60 for classification of SA and SI for the patient's hospital-stay, respectively. ScAN and ScANER are publicly available.